RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 B4E1Z4 1266 aa24.4■■□□□ 1.5
CLN3-240ENST00000631023 TOP1P11387 765 aaKnown RBP24.4■■□□□ 1.5
CLN3-240ENST00000631023 Q3C1V9 767 aa24.4■■□□□ 1.5
CLN3-240ENST00000631023 SAMD1Q6SPF0 538 aaPredicted RBP24.4■■□□□ 1.5
CLN3-240ENST00000631023 ANO2Q9NQ90 1003 aa24.4■■□□□ 1.5
CLN3-240ENST00000631023 RBM8AQ9Y5S9 174 aaKnown RBP24.4■■□□□ 1.5
CLN3-240ENST00000631023 MAPK4P31152 587 aa24.39■■□□□ 1.5
CLN3-240ENST00000631023 POTEEQ6S8J3 1075 aa24.39■■□□□ 1.5
CLN3-240ENST00000631023 NUP88Q99567 741 aaPredicted RBP24.39■■□□□ 1.5
CLN3-240ENST00000631023 LSG1Q9H089 658 aaKnown RBP24.39■■□□□ 1.5
CLN3-240ENST00000631023 RAET1EQ8TD07 263 aa24.38■■□□□ 1.49
CLN3-240ENST00000631023 GMCL1Q96IK5 515 aa24.38■■□□□ 1.49
CLN3-240ENST00000631023 ZSWIM5Q9P217 1185 aa24.38■■□□□ 1.49
CLN3-240ENST00000631023 PPP1R9AQ9ULJ8 1098 aa24.38■■□□□ 1.49
CLN3-240ENST00000631023 PTCH2Q9Y6C5 1203 aa24.38■■□□□ 1.49
CLN3-240ENST00000631023 A0A0G2JMZ2 1700 aa24.38■■□□□ 1.49
CLN3-240ENST00000631023 PEX10O60683 326 aa24.37■■□□□ 1.49
CLN3-240ENST00000631023 CNMDO75829 334 aa24.37■■□□□ 1.49
CLN3-240ENST00000631023 BMP3P12645 472 aa24.37■■□□□ 1.49
CLN3-240ENST00000631023 SLC1A4P43007 532 aa24.37■■□□□ 1.49
CLN3-240ENST00000631023 DGKHQ86XP1 1220 aa24.37■■□□□ 1.49
CLN3-240ENST00000631023 ATG4CQ96DT6 458 aa24.37■■□□□ 1.49
CLN3-240ENST00000631023 SLF1Q9BQI6 1058 aa24.37■■□□□ 1.49
CLN3-240ENST00000631023 CWC22Q9HCG8 908 aaKnown RBP24.37■■□□□ 1.49
CLN3-240ENST00000631023 FBXO28Q9NVF7 368 aa24.37■■□□□ 1.49
CLN3-240ENST00000631023 BTBD7Q9P203 1132 aa24.37■■□□□ 1.49
CLN3-240ENST00000631023 PRKCZQ05513 592 aa24.37■■□□□ 1.49
CLN3-240ENST00000631023 NBPF11Q86T75 865 aa24.37■■□□□ 1.49
CLN3-240ENST00000631023 PRPF38AQ8NAV1 312 aaKnown RBP24.37■■□□□ 1.49
CLN3-240ENST00000631023 TMEM47Q9BQJ4 181 aa24.37■■□□□ 1.49
CLN3-240ENST00000631023 FEM1BQ9UK73 627 aa24.37■■□□□ 1.49
CLN3-240ENST00000631023 ISY1Q9ULR0 285 aaKnown RBP24.37■■□□□ 1.49
CLN3-240ENST00000631023 ADAMTS5Q9UNA0 930 aa24.37■■□□□ 1.49
CLN3-240ENST00000631023 CCDC85CA6NKD9 419 aa24.36■■□□□ 1.49
CLN3-240ENST00000631023 MCCP23508 829 aa24.36■■□□□ 1.49
CLN3-240ENST00000631023 RALYLQ86SE5 291 aaKnown RBP24.36■■□□□ 1.49
CLN3-240ENST00000631023 ZKSCAN3Q9BRR0 538 aa24.36■■□□□ 1.49
CLN3-240ENST00000631023 UBAC1Q9BSL1 405 aa24.36■■□□□ 1.49
CLN3-240ENST00000631023 ZNFX1Q9P2E3 1918 aaKnown RBP24.36■■□□□ 1.49
CLN3-240ENST00000631023 FLT3LGP49771 235 aa24.35■■□□□ 1.49
CLN3-240ENST00000631023 PLS1Q14651 629 aa24.35■■□□□ 1.49
CLN3-240ENST00000631023 SLC9C1Q4G0N8 1177 aa24.35■■□□□ 1.49
CLN3-240ENST00000631023 IFFO2Q5TF58 517 aa24.35■■□□□ 1.49
CLN3-240ENST00000631023 RCSD1Q6JBY9 416 aa24.35■■□□□ 1.49
CLN3-240ENST00000631023 NCOA7Q8NI08 942 aa24.35■■□□□ 1.49
CLN3-240ENST00000631023 NKX2-3Q8TAU0 364 aa24.35■■□□□ 1.49
CLN3-240ENST00000631023 ZSCAN10Q96SZ4 725 aaPredicted RBP24.35■■□□□ 1.49
CLN3-240ENST00000631023 PORCNQ9H237 461 aa24.35■■□□□ 1.49
CLN3-240ENST00000631023 E7EWF7 191 aa24.34■■□□□ 1.49
CLN3-240ENST00000631023 VWA5AO00534 786 aa24.34■■□□□ 1.49
CLN3-240ENST00000631023 CHURC1Q8WUH1 139 aa24.34■■□□□ 1.49
CLN3-240ENST00000631023 SPATC1LQ9H0A9 340 aa24.34■■□□□ 1.49
CLN3-240ENST00000631023 GABRQQ9UN88 632 aa24.34■■□□□ 1.49
CLN3-240ENST00000631023 MTMR7Q9Y216 660 aa24.34■■□□□ 1.49
CLN3-240ENST00000631023 HTTP42858 3142 aa24.34■■□□□ 1.49
CLN3-240ENST00000631023 STAT2P52630 851 aa24.33■■□□□ 1.49
CLN3-240ENST00000631023 IRF5Q13568 498 aa24.33■■□□□ 1.49
CLN3-240ENST00000631023 WDR78Q5VTH9 848 aa24.33■■□□□ 1.49
CLN3-240ENST00000631023 RNF20Q5VTR2 975 aa24.33■■□□□ 1.49
CLN3-240ENST00000631023 PLEKHH3Q7Z736 793 aa24.33■■□□□ 1.49
CLN3-240ENST00000631023 DCAF4Q8WV16 495 aa24.33■■□□□ 1.49
CLN3-240ENST00000631023 KIFC2Q96AC6 838 aa24.33■■□□□ 1.49
CLN3-240ENST00000631023 CTDP1Q9Y5B0 961 aaPredicted RBP24.33■■□□□ 1.49
CLN3-240ENST00000631023 TMEM232C9JQI7 657 aa24.33■■□□□ 1.48
CLN3-240ENST00000631023 IKQ13123 557 aaPredicted RBP24.33■■□□□ 1.48
CLN3-240ENST00000631023 NECTIN1Q15223 517 aa24.33■■□□□ 1.48
CLN3-240ENST00000631023 GPR142Q7Z601 462 aa24.33■■□□□ 1.48
CLN3-240ENST00000631023 FAM160B2Q86V87 743 aa24.33■■□□□ 1.48
CLN3-240ENST00000631023 ANKS1AQ92625 1134 aa24.33■■□□□ 1.48
CLN3-240ENST00000631023 KIAA0100Q14667 2235 aaKnown RBP24.33■■□□□ 1.48
CLN3-240ENST00000631023 PLXNB2O15031 1838 aa24.32■■□□□ 1.48
CLN3-240ENST00000631023 CENPFP49454 3210 aa24.32■■□□□ 1.48
CLN3-240ENST00000631023 PLA2G6O60733 806 aa24.32■■□□□ 1.48
CLN3-240ENST00000631023 FDX1P10109 184 aa24.32■■□□□ 1.48
CLN3-240ENST00000631023 TMEM132BQ14DG7 1078 aa24.32■■□□□ 1.48
CLN3-240ENST00000631023 SHCBP1Q8NEM2 672 aa24.32■■□□□ 1.48
CLN3-240ENST00000631023 SOCS4Q8WXH5 440 aa24.32■■□□□ 1.48
CLN3-240ENST00000631023 CHMP4CQ96CF2 233 aa24.32■■□□□ 1.48
CLN3-240ENST00000631023 NUDT12Q9BQG2 462 aa24.32■■□□□ 1.48
CLN3-240ENST00000631023 MOV10L1Q9BXT6 1211 aaKnown RBP24.32■■□□□ 1.48
CLN3-240ENST00000631023 IVNS1ABPQ9Y6Y0 642 aa24.32■■□□□ 1.48
CLN3-240ENST00000631023 TNKSO95271 1327 aa24.31■■□□□ 1.48
CLN3-240ENST00000631023 ZBED4O75132 1171 aa24.31■■□□□ 1.48
CLN3-240ENST00000631023 CAPN15O75808 1086 aa24.31■■□□□ 1.48
CLN3-240ENST00000631023 CCDC96Q2M329 555 aa24.31■■□□□ 1.48
CLN3-240ENST00000631023 CREB3L3Q68CJ9 461 aa24.31■■□□□ 1.48
CLN3-240ENST00000631023 KCTD1Q719H9 257 aa24.31■■□□□ 1.48
CLN3-240ENST00000631023 ENAHQ8N8S7 591 aaPredicted RBP24.31■■□□□ 1.48
CLN3-240ENST00000631023 ARMC5Q96C12 935 aa24.31■■□□□ 1.48
CLN3-240ENST00000631023 MROH8Q9H579 483 aa24.31■■□□□ 1.48
CLN3-240ENST00000631023 KAT14Q9H8E8 782 aa24.31■■□□□ 1.48
CLN3-240ENST00000631023 GJD2Q9UKL4 321 aa24.31■■□□□ 1.48
CLN3-240ENST00000631023 ERICH2A1L162 156 aa24.3■■□□□ 1.48
CLN3-240ENST00000631023 SLC27A2O14975 620 aa24.3■■□□□ 1.48
CLN3-240ENST00000631023 SLC25A27O95847 323 aa24.3■■□□□ 1.48
CLN3-240ENST00000631023 GRK4P32298 578 aa24.3■■□□□ 1.48
CLN3-240ENST00000631023 SART3Q15020 963 aaKnown RBP24.3■■□□□ 1.48
CLN3-240ENST00000631023 CYB5R4Q7L1T6 521 aa24.3■■□□□ 1.48
CLN3-240ENST00000631023 SLAIN1Q8ND83 568 aa24.3■■□□□ 1.48
CLN3-240ENST00000631023 ADCY3O60266 1144 aa24.29■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms