RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 WWC2Q6AWC2 1192 aa25.22■■□□□ 1.63
PNKP-220ENST00000627232 KIAA0825Q8IV33 1275 aa25.22■■□□□ 1.63
PNKP-220ENST00000627232 CCDC12Q8WUD4 166 aaPredicted RBP25.22■■□□□ 1.63
PNKP-220ENST00000627232 CSRNP2Q9H175 543 aa25.22■■□□□ 1.63
PNKP-220ENST00000627232 DHX36Q9H2U1 1008 aaKnown RBP25.22■■□□□ 1.63
PNKP-220ENST00000627232 SIPA1L1O43166 1804 aa25.22■■□□□ 1.63
PNKP-220ENST00000627232 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP25.22■■□□□ 1.63
PNKP-220ENST00000627232 M0R2N6 131 aa25.22■■□□□ 1.63
PNKP-220ENST00000627232 SHMT1P34896 483 aa25.22■■□□□ 1.63
PNKP-220ENST00000627232 AOC3Q16853 763 aa25.22■■□□□ 1.63
PNKP-220ENST00000627232 KANK3Q6NY19 840 aa25.22■■□□□ 1.63
PNKP-220ENST00000627232 PIK3AP1Q6ZUJ8 805 aa25.22■■□□□ 1.63
PNKP-220ENST00000627232 METTL16Q86W50 562 aaKnown RBP25.22■■□□□ 1.63
PNKP-220ENST00000627232 GPKOWQ92917 476 aaPredicted RBP eCLIP25.22■■□□□ 1.63
PNKP-220ENST00000627232 CCDC17Q96LX7 622 aa25.22■■□□□ 1.63
PNKP-220ENST00000627232 CDC25BP30305 580 aa25.21■■□□□ 1.63
PNKP-220ENST00000627232 ASPRV1Q53RT3 343 aa25.21■■□□□ 1.63
PNKP-220ENST00000627232 NOM1Q5C9Z4 860 aaKnown RBP25.21■■□□□ 1.63
PNKP-220ENST00000627232 SLC16A10Q8TF71 515 aa25.21■■□□□ 1.63
PNKP-220ENST00000627232 RRP36Q96EU6 259 aaKnown RBP25.21■■□□□ 1.63
PNKP-220ENST00000627232 TRIM5Q9C035 493 aa25.21■■□□□ 1.63
PNKP-220ENST00000627232 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP25.21■■□□□ 1.63
PNKP-220ENST00000627232 TTLL1O95922 423 aa25.2■■□□□ 1.62
PNKP-220ENST00000627232 GOLGA8HP0CJ92 632 aa25.2■■□□□ 1.62
PNKP-220ENST00000627232 SNHG28P0DPA3 235 aa25.2■■□□□ 1.62
PNKP-220ENST00000627232 MDM2Q00987 491 aaPredicted RBP25.2■■□□□ 1.62
PNKP-220ENST00000627232 ZNF174Q15697 407 aa25.2■■□□□ 1.62
PNKP-220ENST00000627232 DPCR1Q3MIW9 517 aa25.2■■□□□ 1.62
PNKP-220ENST00000627232 SPECC1Q5M775 1068 aa25.2■■□□□ 1.62
PNKP-220ENST00000627232 MTMR7Q9Y216 660 aa25.2■■□□□ 1.62
PNKP-220ENST00000627232 KIF13BQ9NQT8 1826 aa25.19■■□□□ 1.62
PNKP-220ENST00000627232 hCG_1984214I3L0E3 225 aa25.19■■□□□ 1.62
PNKP-220ENST00000627232 PDHBP11177 359 aa25.19■■□□□ 1.62
PNKP-220ENST00000627232 NFIAQ12857 509 aa25.19■■□□□ 1.62
PNKP-220ENST00000627232 TYW1BQ6NUM6 668 aa25.19■■□□□ 1.62
PNKP-220ENST00000627232 USP17L2Q6R6M4 530 aa25.19■■□□□ 1.62
PNKP-220ENST00000627232 HEATR3Q7Z4Q2 680 aa25.19■■□□□ 1.62
PNKP-220ENST00000627232 ZNF713Q8N859 430 aaPredicted RBP25.19■■□□□ 1.62
PNKP-220ENST00000627232 RIOX1Q9H6W3 641 aa25.19■■□□□ 1.62
PNKP-220ENST00000627232 MYH4Q9Y623 1939 aa25.19■■□□□ 1.62
PNKP-220ENST00000627232 A0A087WWV3 80 aa25.18■■□□□ 1.62
PNKP-220ENST00000627232 WNT7AO00755 349 aa25.18■■□□□ 1.62
PNKP-220ENST00000627232 POLR2DO15514 142 aaKnown RBP25.18■■□□□ 1.62
PNKP-220ENST00000627232 PTGDRQ13258 359 aa25.18■■□□□ 1.62
PNKP-220ENST00000627232 PNOCQ13519 176 aa25.18■■□□□ 1.62
PNKP-220ENST00000627232 RTKN2Q8IZC4 609 aa25.18■■□□□ 1.62
PNKP-220ENST00000627232 AOPEPQ8N6M6 819 aa25.18■■□□□ 1.62
PNKP-220ENST00000627232 TTLL6Q8N841 843 aa25.18■■□□□ 1.62
PNKP-220ENST00000627232 CCDC34Q96HJ3 373 aa25.18■■□□□ 1.62
PNKP-220ENST00000627232 ZMYND12Q9H0C1 365 aa25.18■■□□□ 1.62
PNKP-220ENST00000627232 SEC63Q9UGP8 760 aaKnown RBP25.18■■□□□ 1.62
PNKP-220ENST00000627232 SMTNL1A8MU46 457 aa25.17■■□□□ 1.62
PNKP-220ENST00000627232 USP17L5A8MUK1 530 aa25.17■■□□□ 1.62
PNKP-220ENST00000627232 PPIP5K2O43314 1243 aa25.17■■□□□ 1.62
PNKP-220ENST00000627232 CCDC93Q567U6 631 aa25.17■■□□□ 1.62
PNKP-220ENST00000627232 ARL6IP4Q66PJ3 421 aaKnown RBP25.17■■□□□ 1.62
PNKP-220ENST00000627232 PCDHA6Q9UN73 950 aa25.17■■□□□ 1.62
PNKP-220ENST00000627232 PCDHA8Q9Y5H6 950 aa25.17■■□□□ 1.62
PNKP-220ENST00000627232 CCDC194A0A1B0GVG4 234 aa25.17■■□□□ 1.62
PNKP-220ENST00000627232 BIN1O00499 593 aa25.17■■□□□ 1.62
PNKP-220ENST00000627232 ACTN4O43707 911 aaKnown RBP25.17■■□□□ 1.62
PNKP-220ENST00000627232 C21orf2O43822 256 aa25.17■■□□□ 1.62
PNKP-220ENST00000627232 RBM5P52756 815 aaKnown RBP eCLIP25.17■■□□□ 1.62
PNKP-220ENST00000627232 POSTNQ15063 836 aa25.17■■□□□ 1.62
PNKP-220ENST00000627232 MRFAP1L1Q96HT8 127 aa25.17■■□□□ 1.62
PNKP-220ENST00000627232 PSMD1Q99460 953 aa25.17■■□□□ 1.62
PNKP-220ENST00000627232 FAM198AQ9UFP1 575 aa25.17■■□□□ 1.62
PNKP-220ENST00000627232 SERTAD1Q9UHV2 236 aa25.17■■□□□ 1.62
PNKP-220ENST00000627232 COL2A1P02458 1487 aaPredicted RBP25.16■■□□□ 1.62
PNKP-220ENST00000627232 IKBKBO14920 756 aa25.16■■□□□ 1.62
PNKP-220ENST00000627232 ADAMTS3O15072 1205 aa25.16■■□□□ 1.62
PNKP-220ENST00000627232 NT5DC1Q5TFE4 455 aa25.16■■□□□ 1.62
PNKP-220ENST00000627232 PYM1Q9BRP8 204 aaKnown RBP25.16■■□□□ 1.62
PNKP-220ENST00000627232 PI4KBQ9UBF8 816 aa25.16■■□□□ 1.62
PNKP-220ENST00000627232 PCDHA5Q9Y5H7 936 aa25.16■■□□□ 1.62
PNKP-220ENST00000627232 ESYT2A0FGR8 921 aa25.15■■□□□ 1.62
PNKP-220ENST00000627232 GNA11P29992 359 aa25.15■■□□□ 1.62
PNKP-220ENST00000627232 TPM4P67936 248 aa25.15■■□□□ 1.62
PNKP-220ENST00000627232 RASGRP2Q7LDG7 609 aa25.15■■□□□ 1.62
PNKP-220ENST00000627232 C6orf50Q9HD87 102 aa25.15■■□□□ 1.62
PNKP-220ENST00000627232 CLIP2Q9UDT6 1046 aa25.15■■□□□ 1.62
PNKP-220ENST00000627232 YDJCA8MPS7 323 aa25.14■■□□□ 1.62
PNKP-220ENST00000627232 ENTPD3O75355 529 aa25.14■■□□□ 1.62
PNKP-220ENST00000627232 NAPAP54920 295 aa25.14■■□□□ 1.62
PNKP-220ENST00000627232 USP49Q70CQ1 688 aa25.14■■□□□ 1.62
PNKP-220ENST00000627232 KRT25Q7Z3Z0 450 aa25.14■■□□□ 1.62
PNKP-220ENST00000627232 FOXP4Q8IVH2 680 aaPredicted RBP25.14■■□□□ 1.62
PNKP-220ENST00000627232 ZFPM1Q8IX07 1006 aa25.14■■□□□ 1.62
PNKP-220ENST00000627232 SYMPKQ92797 1274 aaKnown RBP25.14■■□□□ 1.62
PNKP-220ENST00000627232 VPS33BQ9H267 617 aa25.14■■□□□ 1.62
PNKP-220ENST00000627232 PCDHAC2Q9Y5I4 1007 aa25.14■■□□□ 1.62
PNKP-220ENST00000627232 MCM7P33993 719 aa25.13■■□□□ 1.61
PNKP-220ENST00000627232 SARSP49591 514 aaKnown RBP25.13■■□□□ 1.61
PNKP-220ENST00000627232 LRRC47Q8N1G4 583 aaKnown RBP25.13■■□□□ 1.61
PNKP-220ENST00000627232 C4orf32Q8N8J7 132 aa25.13■■□□□ 1.61
PNKP-220ENST00000627232 TRIML1Q8N9V2 468 aa25.13■■□□□ 1.61
PNKP-220ENST00000627232 SPC24Q8NBT2 197 aa25.13■■□□□ 1.61
PNKP-220ENST00000627232 PIGSQ96S52 555 aa25.13■■□□□ 1.61
PNKP-220ENST00000627232 PDGFDQ9GZP0 370 aaPredicted RBP25.13■■□□□ 1.61
PNKP-220ENST00000627232 ATRNL1Q5VV63 1379 aa25.13■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms