RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 SYTL5Q8TDW5 730 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-208ENST00000625916 TMEM74Q96NL1 305 aa5.57□□□□□ -1.52
SCN1A-208ENST00000625916 G6PC3Q9BUM1 346 aa5.57□□□□□ -1.52
SCN1A-208ENST00000625916 SIRT5Q9NXA8 310 aa5.57□□□□□ -1.52
SCN1A-208ENST00000625916 MINDY4BA8MYZ0 360 aa5.56□□□□□ -1.52
SCN1A-208ENST00000625916 RNF4P78317 190 aa5.56□□□□□ -1.52
SCN1A-208ENST00000625916 PWP1Q13610 501 aa5.56□□□□□ -1.52
SCN1A-208ENST00000625916 MPP2Q14168 576 aa5.56□□□□□ -1.52
SCN1A-208ENST00000625916 SSPNQ14714 243 aa5.56□□□□□ -1.52
SCN1A-208ENST00000625916 CEP128Q6ZU80 1094 aa5.56□□□□□ -1.52
SCN1A-208ENST00000625916 TMC4Q7Z404 712 aa5.56□□□□□ -1.52
SCN1A-208ENST00000625916 GOLM1Q8NBJ4 401 aa5.56□□□□□ -1.52
SCN1A-208ENST00000625916 CRELD1Q96HD1 420 aa5.56□□□□□ -1.52
SCN1A-208ENST00000625916 RHOVQ96L33 236 aa5.56□□□□□ -1.52
SCN1A-208ENST00000625916 HDAC8Q9BY41 377 aa5.56□□□□□ -1.52
SCN1A-208ENST00000625916 FOXP3Q9BZS1 431 aa5.56□□□□□ -1.52
SCN1A-208ENST00000625916 IRAK3Q9Y616 596 aa5.56□□□□□ -1.52
SCN1A-208ENST00000625916 NOTOA8MTQ0 251 aa5.55□□□□□ -1.52
SCN1A-208ENST00000625916 DNAJA2O60884 412 aa5.55□□□□□ -1.52
SCN1A-208ENST00000625916 RAG1P15918 1043 aa5.55□□□□□ -1.52
SCN1A-208ENST00000625916 PI3P19957 117 aa5.55□□□□□ -1.52
SCN1A-208ENST00000625916 PCBP3P57721 371 aaKnown RBP5.55□□□□□ -1.52
SCN1A-208ENST00000625916 REC114Q7Z4M0 266 aa5.55□□□□□ -1.52
SCN1A-208ENST00000625916 USHBP1Q8N6Y0 703 aa5.55□□□□□ -1.52
SCN1A-208ENST00000625916 MARCH10Q8NA82 808 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-208ENST00000625916 DAGLBQ8NCG7 672 aa5.55□□□□□ -1.52
SCN1A-208ENST00000625916 FBXO27Q8NI29 283 aa5.55□□□□□ -1.52
SCN1A-208ENST00000625916 TCTN2Q96GX1 697 aa5.55□□□□□ -1.52
SCN1A-208ENST00000625916 MAP6Q96JE9 813 aa5.55□□□□□ -1.52
SCN1A-208ENST00000625916 SIGLEC10Q96LC7 697 aa5.55□□□□□ -1.52
SCN1A-208ENST00000625916 KCNC2Q96PR1 638 aa5.55□□□□□ -1.52
SCN1A-208ENST00000625916 RSRP1Q9BUV0 290 aa5.55□□□□□ -1.52
SCN1A-208ENST00000625916 TRAIPQ9BWF2 469 aa5.55□□□□□ -1.52
SCN1A-208ENST00000625916 KRTAP4-5Q9BYR2 181 aa5.55□□□□□ -1.52
SCN1A-208ENST00000625916 MRS2Q9HD23 443 aa5.55□□□□□ -1.52
SCN1A-208ENST00000625916 TCFL5Q9UL49 500 aa5.55□□□□□ -1.52
SCN1A-208ENST00000625916 ZNF281Q9Y2X9 895 aa5.55□□□□□ -1.52
SCN1A-208ENST00000625916 A0A0G2JLL6 359 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-208ENST00000625916 RGS13O14921 159 aa5.54□□□□□ -1.52
SCN1A-208ENST00000625916 TLR3O15455 904 aaKnown RBP5.54□□□□□ -1.52
SCN1A-208ENST00000625916 NRDCO43847 1150 aa5.54□□□□□ -1.52
SCN1A-208ENST00000625916 SORBS3O60504 671 aa5.54□□□□□ -1.52
SCN1A-208ENST00000625916 FKTNO75072 461 aa5.54□□□□□ -1.52
SCN1A-208ENST00000625916 KIR2DL1P43626 348 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-208ENST00000625916 KIR2DL2P43627 348 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-208ENST00000625916 ARSHQ5FYA8 562 aa5.54□□□□□ -1.52
SCN1A-208ENST00000625916 SND1Q7KZF4 910 aaKnown RBP eCLIP5.54□□□□□ -1.52
SCN1A-208ENST00000625916 TMC3Q7Z5M5 1100 aa5.54□□□□□ -1.52
SCN1A-208ENST00000625916 ZNF655Q8N720 491 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-208ENST00000625916 VWCEQ96DN2 955 aa5.54□□□□□ -1.52
SCN1A-208ENST00000625916 CRTAC1Q9NQ79 661 aa5.54□□□□□ -1.52
SCN1A-208ENST00000625916 VTI1BQ9UEU0 232 aa5.54□□□□□ -1.52
SCN1A-208ENST00000625916 MBD1Q9UIS9 605 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-208ENST00000625916 HRKO00198 91 aa5.53□□□□□ -1.52
SCN1A-208ENST00000625916 FOXD2O60548 495 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-208ENST00000625916 TRIM13O60858 407 aa5.53□□□□□ -1.52
SCN1A-208ENST00000625916 SASH1O94885 1247 aa5.53□□□□□ -1.52
SCN1A-208ENST00000625916 EFEMP2O95967 443 aa5.53□□□□□ -1.52
SCN1A-208ENST00000625916 SYPP08247 313 aa5.53□□□□□ -1.52
SCN1A-208ENST00000625916 NFIXQ14938 502 aa5.53□□□□□ -1.52
SCN1A-208ENST00000625916 CWF19L2Q2TBE0 894 aaKnown RBP5.53□□□□□ -1.52
SCN1A-208ENST00000625916 OLFML2BQ68BL8 750 aa5.53□□□□□ -1.52
SCN1A-208ENST00000625916 PANK1Q8TE04 598 aa5.53□□□□□ -1.52
SCN1A-208ENST00000625916 HHIPL1Q96JK4 782 aa5.53□□□□□ -1.52
SCN1A-208ENST00000625916 KRTAP9-3Q9BYQ3 159 aa5.53□□□□□ -1.52
SCN1A-208ENST00000625916 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.53□□□□□ -1.52
SCN1A-208ENST00000625916 TMEM82A0PJX8 343 aa5.52□□□□□ -1.53
SCN1A-208ENST00000625916 SLC22A31A6NKX4 558 aa5.52□□□□□ -1.53
SCN1A-208ENST00000625916 UBOX5O94941 541 aa5.52□□□□□ -1.53
SCN1A-208ENST00000625916 PNLIPP16233 465 aa5.52□□□□□ -1.53
SCN1A-208ENST00000625916 SYN1P17600 705 aa5.52□□□□□ -1.53
SCN1A-208ENST00000625916 SDHBP21912 280 aa5.52□□□□□ -1.53
SCN1A-208ENST00000625916 VIPR1P32241 457 aa5.52□□□□□ -1.53
SCN1A-208ENST00000625916 AFF3P51826 1226 aaKnown RBP5.52□□□□□ -1.53
SCN1A-208ENST00000625916 EPHB3P54753 998 aa5.52□□□□□ -1.53
SCN1A-208ENST00000625916 NBPF9Q3BBW0 867 aa5.52□□□□□ -1.53
SCN1A-208ENST00000625916 FAM196AQ6ZSG2 479 aa5.52□□□□□ -1.53
SCN1A-208ENST00000625916 LINC00116Q8NCU8 138 aa5.52□□□□□ -1.53
SCN1A-208ENST00000625916 N4BP3O15049 544 aa5.51□□□□□ -1.53
SCN1A-208ENST00000625916 PRAMEF1O95521 474 aa5.51□□□□□ -1.53
SCN1A-208ENST00000625916 RTP1P59025 263 aa5.51□□□□□ -1.53
SCN1A-208ENST00000625916 SNW1Q13573 536 aaKnown RBP5.51□□□□□ -1.53
SCN1A-208ENST00000625916 NBPF12Q5TAG4 269 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-208ENST00000625916 ZPBP2Q6X784 338 aa5.51□□□□□ -1.53
SCN1A-208ENST00000625916 CNTD2Q9H8S5 307 aa5.51□□□□□ -1.53
SCN1A-208ENST00000625916 GMIPQ9P107 970 aa5.51□□□□□ -1.53
SCN1A-208ENST00000625916 TIMELESSQ9UNS1 1208 aa5.51□□□□□ -1.53
SCN1A-208ENST00000625916 PCDHB14Q9Y5E9 798 aa5.51□□□□□ -1.53
SCN1A-208ENST00000625916 TAF6LQ9Y6J9 622 aa5.51□□□□□ -1.53
SCN1A-208ENST00000625916 ABLIM1O14639 778 aa5.5□□□□□ -1.53
SCN1A-208ENST00000625916 MPOP05164 745 aa5.5□□□□□ -1.53
SCN1A-208ENST00000625916 GARTP22102 1010 aa5.5□□□□□ -1.53
SCN1A-208ENST00000625916 ITGAEP38570 1179 aa5.5□□□□□ -1.53
SCN1A-208ENST00000625916 ARL4AP40617 200 aa5.5□□□□□ -1.53
SCN1A-208ENST00000625916 RAD51AP2Q09MP3 1159 aa5.5□□□□□ -1.53
SCN1A-208ENST00000625916 BBS9Q3SYG4 887 aa5.5□□□□□ -1.53
SCN1A-208ENST00000625916 GALNT18Q6P9A2 607 aa5.5□□□□□ -1.53
SCN1A-208ENST00000625916 DACT3Q96B18 629 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-208ENST00000625916 PLCD4Q9BRC7 762 aa5.5□□□□□ -1.53
SCN1A-208ENST00000625916 BRMS1Q9HCU9 246 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms