RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 MRGBPQ9NV56 204 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 PLCD1P51178 756 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 SF3B3Q15393 1217 aaKnown RBP5.55□□□□□ -1.52
VPS13D-214ENST00000620676 BICDL1Q6ZP65 573 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 DRC3Q9H069 523 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 MTRF1LQ9UGC7 380 aaKnown RBP5.55□□□□□ -1.52
VPS13D-214ENST00000620676 PTPRCP08575 1304 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 PRDM1O75626 825 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 CWF19L2Q2TBE0 894 aaKnown RBP5.55□□□□□ -1.52
VPS13D-214ENST00000620676 PHLDB3Q6NSJ2 640 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 CCDC174Q6PII3 467 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 SDCCAG8Q86SQ7 713 aaPredicted RBP5.55□□□□□ -1.52
VPS13D-214ENST00000620676 PRMT1Q99873 361 aaKnown RBP5.55□□□□□ -1.52
VPS13D-214ENST00000620676 GMNCA6NCL1 334 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 SMAPO00193 183 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 ABCB4P21439 1286 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 NFRKBQ6P4R8 1299 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 VSTM4Q8IW00 320 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 CCDC105Q8IYK2 499 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 DNAI2Q9GZS0 605 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 PIK3AP1Q6ZUJ8 805 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 THEMIS2Q5TEJ8 643 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 UBE3BQ7Z3V4 1068 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 NCOA7Q8NI08 942 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 NOD2Q9HC29 1040 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 PACSIN2Q9UNF0 486 aaPredicted RBP5.55□□□□□ -1.52
VPS13D-214ENST00000620676 TCP11X1B4DZS4 312 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 EIF3HO15372 352 aaKnown RBP eCLIP5.55□□□□□ -1.526e-7■■■■■ 28
VPS13D-214ENST00000620676 PLTPP55058 493 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 SFMBT2Q5VUG0 894 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 MFSD6Q6ZSS7 791 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 SIRT1Q96EB6 747 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 USTQ9Y2C2 406 aa5.55□□□□□ -1.52
VPS13D-214ENST00000620676 EPN1Q9Y6I3 576 aaPredicted RBP5.55□□□□□ -1.52
VPS13D-214ENST00000620676 ATP1A1P05023 1023 aaKnown RBP5.54□□□□□ -1.52
VPS13D-214ENST00000620676 MMEP08473 750 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 ADCY8P40145 1251 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 PPP2R5DQ14738 602 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 PPP1R21Q6ZMI0 780 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 DPH6Q7L8W6 267 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 SIRT2Q8IXJ6 389 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 JAG2Q9Y219 1238 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 CCDC195A0A1B0GUA6 201 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 PAK1Q13153 545 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 IFI16Q16666 785 aaKnown RBP5.54□□□□□ -1.52
VPS13D-214ENST00000620676 PRR16Q569H4 304 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 TEKT4Q8WW24 435 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 CDC25AP30304 524 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 DYNC1I2Q13409 638 aaKnown RBP5.54□□□□□ -1.52
VPS13D-214ENST00000620676 TRIML1Q8N9V2 468 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 KLHL23Q8NBE8 558 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 HMG20BQ9P0W2 317 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 V9GY48 417 aaPredicted RBP5.54□□□□□ -1.52
VPS13D-214ENST00000620676 A0A087WZG4 1122 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 SPDYE3A6NKU9 549 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 TRAF5O00463 557 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 MEFVO15553 781 aaPredicted RBP5.54□□□□□ -1.52
VPS13D-214ENST00000620676 ZBTB17Q13105 803 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 SMAD1Q15797 465 aaKnown RBP5.54□□□□□ -1.52
VPS13D-214ENST00000620676 ALG13Q9NP73 1137 aaKnown RBP5.54□□□□□ -1.52
VPS13D-214ENST00000620676 ZMYM4Q5VZL5 1548 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 PEG3Q9GZU2 1588 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 EVA1CP58658 441 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 CTDSPL2Q05D32 466 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 CALCOCO2Q13137 446 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 DHX32Q7L7V1 743 aaKnown RBP5.54□□□□□ -1.52
VPS13D-214ENST00000620676 FLCNQ8NFG4 579 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 TCP11L1Q9NUJ3 509 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 ARIH1Q9Y4X5 557 aaPredicted RBP5.54□□□□□ -1.52
VPS13D-214ENST00000620676 SGSM2O43147 1006 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 GIGYF1O75420 1035 aaPredicted RBP5.54□□□□□ -1.52
VPS13D-214ENST00000620676 A1BGP04217 495 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 SKIP12755 728 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 PPARAQ07869 468 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 KRT40Q6A162 431 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 CYFIP2Q96F07 1278 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 ZCCHC18P0CG32 403 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 NXNQ6DKJ4 435 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 CYP4F22Q6NT55 531 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 BRAPQ7Z569 592 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 TRIM50Q86XT4 487 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 RNPC3Q96LT9 517 aaKnown RBP5.54□□□□□ -1.52
VPS13D-214ENST00000620676 LSG1Q9H089 658 aaKnown RBP5.54□□□□□ -1.52
VPS13D-214ENST00000620676 TMOD2Q9NZR1 351 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 PCDHA5Q9Y5H7 936 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 A0A0D9SFI3 127 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 CCZ1BP86790 482 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 CCZ1P86791 482 aaPredicted RBP5.54□□□□□ -1.52
VPS13D-214ENST00000620676 TMED2Q15363 201 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 RINLQ6ZS11 566 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 PCDHA13Q9Y5I0 950 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 A0A0G2JND7 137 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 SPAG7O75391 227 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 KCTD21Q4G0X4 260 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 SLC9C2Q5TAH2 1124 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 MYSM1Q5VVJ2 828 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.54□□□□□ -1.529e-6■■□□□ 11.5
VPS13D-214ENST00000620676 C3orf20Q8ND61 904 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 MIEF2Q96C03 454 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 SGSM3Q96HU1 749 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms