RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 SNHG28P0DPA3 235 aa23.1■■□□□ 1.29
UPF3A-211ENST00000618700 SLFN13Q68D06 897 aa23.1■■□□□ 1.29
UPF3A-211ENST00000618700 RASGRP2Q7LDG7 609 aa23.1■■□□□ 1.29
UPF3A-211ENST00000618700 IFNL1Q8IU54 200 aa23.1■■□□□ 1.29
UPF3A-211ENST00000618700 TMTC2Q8N394 836 aa23.1■■□□□ 1.29
UPF3A-211ENST00000618700 ZCCHC17Q9NP64 241 aaKnown RBP23.1■■□□□ 1.29
UPF3A-211ENST00000618700 SLC45A1Q9Y2W3 748 aa23.1■■□□□ 1.29
UPF3A-211ENST00000618700 FAM43AQ8N2R8 423 aa23.09■■□□□ 1.29
UPF3A-211ENST00000618700 PDHBP11177 359 aa23.08■■□□□ 1.29
UPF3A-211ENST00000618700 HOXA7P31268 230 aaPredicted RBP23.08■■□□□ 1.29
UPF3A-211ENST00000618700 Q6ZUG5 572 aa23.08■■□□□ 1.29
UPF3A-211ENST00000618700 DCAF4Q8WV16 495 aa23.08■■□□□ 1.29
UPF3A-211ENST00000618700 NUP88Q99567 741 aaPredicted RBP23.08■■□□□ 1.29
UPF3A-211ENST00000618700 RPAP3Q9H6T3 665 aaPredicted RBP23.08■■□□□ 1.29
UPF3A-211ENST00000618700 PDRG1Q9NUG6 133 aa23.08■■□□□ 1.29
UPF3A-211ENST00000618700 TROAPQ12815 778 aa23.07■■□□□ 1.28
UPF3A-211ENST00000618700 TOB2Q14106 344 aaPredicted RBP23.07■■□□□ 1.28
UPF3A-211ENST00000618700 FAM83BQ5T0W9 1011 aa23.07■■□□□ 1.28
UPF3A-211ENST00000618700 ALDH8A1Q9H2A2 487 aaPredicted RBP23.07■■□□□ 1.28
UPF3A-211ENST00000618700 PARP14Q460N5 1801 aa23.06■■□□□ 1.28
UPF3A-211ENST00000618700 CCDC69A6NI79 296 aa23.06■■□□□ 1.28
UPF3A-211ENST00000618700 USP17L15C9J2P7 530 aa23.06■■□□□ 1.28
UPF3A-211ENST00000618700 USP17L13C9JLJ4 530 aa23.06■■□□□ 1.28
UPF3A-211ENST00000618700 USP17L11C9JVI0 530 aa23.06■■□□□ 1.28
UPF3A-211ENST00000618700 USP17L18D6R9N7 530 aa23.06■■□□□ 1.28
UPF3A-211ENST00000618700 USP17L22D6RA61 530 aa23.06■■□□□ 1.28
UPF3A-211ENST00000618700 USP17L17D6RBQ6 530 aa23.06■■□□□ 1.28
UPF3A-211ENST00000618700 USP17L19D6RCP7 530 aa23.06■■□□□ 1.28
UPF3A-211ENST00000618700 USP17L20D6RJB6 530 aa23.06■■□□□ 1.28
UPF3A-211ENST00000618700 PDHXO00330 501 aa23.06■■□□□ 1.28
UPF3A-211ENST00000618700 RAD21O60216 631 aa23.06■■□□□ 1.28
UPF3A-211ENST00000618700 BMP3P12645 472 aa23.06■■□□□ 1.28
UPF3A-211ENST00000618700 SLC1A4P43007 532 aa23.06■■□□□ 1.28
UPF3A-211ENST00000618700 USP17L24Q0WX57 530 aa23.06■■□□□ 1.28
UPF3A-211ENST00000618700 PABPC4Q13310 644 aaKnown RBP eCLIP23.06■■□□□ 1.28
UPF3A-211ENST00000618700 CATIPQ7Z7H3 387 aa23.06■■□□□ 1.28
UPF3A-211ENST00000618700 ZNF654Q8IZM8 581 aa23.06■■□□□ 1.28
UPF3A-211ENST00000618700 BRF1Q92994 677 aa23.06■■□□□ 1.28
UPF3A-211ENST00000618700 BRPF3Q9ULD4 1205 aa23.06■■□□□ 1.28
UPF3A-211ENST00000618700 RLFQ13129 1914 aa23.06■■□□□ 1.28
UPF3A-211ENST00000618700 DDAH1O94760 285 aa23.05■■□□□ 1.28
UPF3A-211ENST00000618700 EVCP57679 992 aa23.05■■□□□ 1.28
UPF3A-211ENST00000618700 FGD1P98174 961 aa23.05■■□□□ 1.28
UPF3A-211ENST00000618700 ZNF543Q08ER8 600 aa23.05■■□□□ 1.28
UPF3A-211ENST00000618700 RABEP1Q15276 862 aa23.05■■□□□ 1.28
UPF3A-211ENST00000618700 OTUD7BQ6GQQ9 843 aa23.05■■□□□ 1.28
UPF3A-211ENST00000618700 APOA5Q6Q788 366 aa23.05■■□□□ 1.28
UPF3A-211ENST00000618700 NFXL1Q6ZNB6 911 aa23.05■■□□□ 1.28
UPF3A-211ENST00000618700 CATSPERGQ6ZRH7 1159 aa23.05■■□□□ 1.28
UPF3A-211ENST00000618700 MTMR7Q9Y216 660 aa23.05■■□□□ 1.28
UPF3A-211ENST00000618700 FARP1Q9Y4F1 1045 aaPredicted RBP23.05■■□□□ 1.28
UPF3A-211ENST00000618700 NEK4P51957 841 aa23.04■■□□□ 1.28
UPF3A-211ENST00000618700 MAP2K1Q02750 393 aaPredicted RBP23.04■■□□□ 1.28
UPF3A-211ENST00000618700 MAP3K14Q99558 947 aa23.04■■□□□ 1.28
UPF3A-211ENST00000618700 TANGO6Q9C0B7 1094 aa23.04■■□□□ 1.28
UPF3A-211ENST00000618700 ASCC2Q9H1I8 757 aaPredicted RBP23.04■■□□□ 1.28
UPF3A-211ENST00000618700 WBP1LQ9NX94 342 aa23.04■■□□□ 1.28
UPF3A-211ENST00000618700 PNMA3Q9UL41 463 aa23.04■■□□□ 1.28
UPF3A-211ENST00000618700 SLC12A7Q9Y666 1083 aa23.04■■□□□ 1.28
UPF3A-211ENST00000618700 PCNTO95613 3336 aa23.04■■□□□ 1.28
UPF3A-211ENST00000618700 KLF18A0A0U1RQI7 1052 aa23.03■■□□□ 1.28
UPF3A-211ENST00000618700 ALDH1A1P00352 501 aa23.03■■□□□ 1.28
UPF3A-211ENST00000618700 RCAN1P53805 252 aa23.03■■□□□ 1.28
UPF3A-211ENST00000618700 APOBRQ0VD83 1088 aa23.03■■□□□ 1.28
UPF3A-211ENST00000618700 GRM4Q14833 912 aa23.03■■□□□ 1.28
UPF3A-211ENST00000618700 CCDC96Q2M329 555 aa23.03■■□□□ 1.28
UPF3A-211ENST00000618700 PLCD3Q8N3E9 789 aa23.03■■□□□ 1.28
UPF3A-211ENST00000618700 MYL10Q9BUA6 226 aa23.03■■□□□ 1.28
UPF3A-211ENST00000618700 NID2Q14112 1375 aa23.02■■□□□ 1.28
UPF3A-211ENST00000618700 A0A0G2JMZ2 1700 aa23.02■■□□□ 1.28
UPF3A-211ENST00000618700 PLA2G6O60733 806 aa23.02■■□□□ 1.28
UPF3A-211ENST00000618700 AK2P54819 239 aa23.02■■□□□ 1.28
UPF3A-211ENST00000618700 IRX3P78415 501 aaPredicted RBP23.02■■□□□ 1.28
UPF3A-211ENST00000618700 ASPRV1Q53RT3 343 aa23.02■■□□□ 1.28
UPF3A-211ENST00000618700 GPATCH4Q5T3I0 446 aaKnown RBP23.02■■□□□ 1.28
UPF3A-211ENST00000618700 KCTD1Q719H9 257 aa23.02■■□□□ 1.28
UPF3A-211ENST00000618700 CHMP4CQ96CF2 233 aa23.02■■□□□ 1.28
UPF3A-211ENST00000618700 PARK7Q99497 189 aaKnown RBP23.02■■□□□ 1.28
UPF3A-211ENST00000618700 CFHR5Q9BXR6 569 aa23.02■■□□□ 1.28
UPF3A-211ENST00000618700 FBXO28Q9NVF7 368 aa23.02■■□□□ 1.28
UPF3A-211ENST00000618700 FEM1BQ9UK73 627 aa23.02■■□□□ 1.28
UPF3A-211ENST00000618700 FRMPD2Q68DX3 1309 aaPredicted RBP23.02■■□□□ 1.28
UPF3A-211ENST00000618700 MYPNQ86TC9 1320 aa23.02■■□□□ 1.28
UPF3A-211ENST00000618700 ADGRA2Q96PE1 1338 aa23.02■■□□□ 1.28
UPF3A-211ENST00000618700 CALM1P0DP23 149 aa23.01■■□□□ 1.27
UPF3A-211ENST00000618700 CALM2P0DP24 149 aa23.01■■□□□ 1.27
UPF3A-211ENST00000618700 CALM3P0DP25 149 aa23.01■■□□□ 1.27
UPF3A-211ENST00000618700 CYP2C8P10632 490 aa23.01■■□□□ 1.27
UPF3A-211ENST00000618700 OSBPP22059 807 aa23.01■■□□□ 1.27
UPF3A-211ENST00000618700 ANKRD1Q15327 319 aa23.01■■□□□ 1.27
UPF3A-211ENST00000618700 TAF1CQ15572 869 aaPredicted RBP23.01■■□□□ 1.27
UPF3A-211ENST00000618700 IL27Q8NEV9 243 aa23.01■■□□□ 1.27
UPF3A-211ENST00000618700 MAD2L2Q9UI95 211 aa23.01■■□□□ 1.27
UPF3A-211ENST00000618700 PALM3A6NDB9 673 aaPredicted RBP23■■□□□ 1.27
UPF3A-211ENST00000618700 SPDYE16A6NNV3 312 aaPredicted RBP23■■□□□ 1.27
UPF3A-211ENST00000618700 TMEM232C9JQI7 657 aa23■■□□□ 1.27
UPF3A-211ENST00000618700 FOXN1O15353 648 aa23■■□□□ 1.27
UPF3A-211ENST00000618700 ZBTB43O43298 467 aa23■■□□□ 1.27
UPF3A-211ENST00000618700 FLOT1O75955 427 aa23■■□□□ 1.27
UPF3A-211ENST00000618700 PARP1P09874 1014 aaKnown RBP23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 337.6 ms