RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 CALM2P0DP24 149 aa14.12□□□□□ -0.15
LIG1-221ENST00000613670 CALM3P0DP25 149 aa14.12□□□□□ -0.15
LIG1-221ENST00000613670 BMP6P22004 513 aa14.12□□□□□ -0.15
LIG1-221ENST00000613670 NOA1Q8NC60 698 aaKnown RBP14.12□□□□□ -0.15
LIG1-221ENST00000613670 SECISBP2LQ93073 1101 aaKnown RBP14.12□□□□□ -0.15
LIG1-221ENST00000613670 MAP3K14Q99558 947 aa14.12□□□□□ -0.15
LIG1-221ENST00000613670 CRNKL1Q9BZJ0 848 aaKnown RBP14.12□□□□□ -0.15
LIG1-221ENST00000613670 HAUS4Q9H6D7 363 aa14.12□□□□□ -0.15
LIG1-221ENST00000613670 INTS13Q9NVM9 706 aa14.12□□□□□ -0.15
LIG1-221ENST00000613670 MON2Q7Z3U7 1717 aa14.12□□□□□ -0.15
LIG1-221ENST00000613670 ZRANB2O95218 330 aaKnown RBP eCLIP14.11□□□□□ -0.15
LIG1-221ENST00000613670 PARP1P09874 1014 aaKnown RBP14.11□□□□□ -0.15
LIG1-221ENST00000613670 LIG3P49916 1009 aa14.11□□□□□ -0.15
LIG1-221ENST00000613670 CASP7P55210 303 aa14.11□□□□□ -0.15
LIG1-221ENST00000613670 FAM114A1Q8IWE2 563 aa14.11□□□□□ -0.15
LIG1-221ENST00000613670 CALML4Q96GE6 196 aa14.11□□□□□ -0.15
LIG1-221ENST00000613670 ZBTB1Q9Y2K1 713 aa14.11□□□□□ -0.15
LIG1-221ENST00000613670 CALML3P27482 149 aa14.11□□□□□ -0.15
LIG1-221ENST00000613670 CXCR5P32302 372 aa14.11□□□□□ -0.15
LIG1-221ENST00000613670 NOP2P46087 812 aaKnown RBP14.11□□□□□ -0.15
LIG1-221ENST00000613670 CCT5P48643 541 aa14.11□□□□□ -0.15
LIG1-221ENST00000613670 DYNLL1P63167 89 aaKnown RBP14.11□□□□□ -0.15
LIG1-221ENST00000613670 SAMD1Q6SPF0 538 aaPredicted RBP14.11□□□□□ -0.15
LIG1-221ENST00000613670 RIN2Q8WYP3 895 aaPredicted RBP14.11□□□□□ -0.15
LIG1-221ENST00000613670 ABHD10Q9NUJ1 306 aa14.11□□□□□ -0.15
LIG1-221ENST00000613670 RBM28Q9NW13 759 aaKnown RBP14.11□□□□□ -0.15
LIG1-221ENST00000613670 FEZ2Q9UHY8 353 aaPredicted RBP14.11□□□□□ -0.15
LIG1-221ENST00000613670 A0A1B0GTH6 734 aa14.11□□□□□ -0.15
LIG1-221ENST00000613670 TOB1P50616 345 aaPredicted RBP14.11□□□□□ -0.15
LIG1-221ENST00000613670 C2CD5Q86YS7 1000 aa14.11□□□□□ -0.15
LIG1-221ENST00000613670 RNF26Q9BY78 433 aaPredicted RBP14.11□□□□□ -0.15
LIG1-221ENST00000613670 FAM170AA1A519 330 aa14.1□□□□□ -0.15
LIG1-221ENST00000613670 GTPBP6O43824 516 aaPredicted RBP14.1□□□□□ -0.15
LIG1-221ENST00000613670 ANKRD18AQ8IVF6 992 aa14.1□□□□□ -0.15
LIG1-221ENST00000613670 SEC63Q9UGP8 760 aaKnown RBP14.1□□□□□ -0.15
LIG1-221ENST00000613670 AGLP35573 1532 aa14.1□□□□□ -0.15
LIG1-221ENST00000613670 NAPAP54920 295 aa14.1□□□□□ -0.15
LIG1-221ENST00000613670 SGMS1Q86VZ5 419 aa14.1□□□□□ -0.15
LIG1-221ENST00000613670 MKRN1Q9UHC7 482 aaKnown RBP14.1□□□□□ -0.15
LIG1-221ENST00000613670 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.1□□□□□ -0.15
LIG1-221ENST00000613670 MAP3K15Q6ZN16 1313 aa14.1□□□□□ -0.15
LIG1-221ENST00000613670 GSG1L2A8MUP6 293 aa14.1□□□□□ -0.15
LIG1-221ENST00000613670 TMCO5BA8MYB1 307 aa14.1□□□□□ -0.15
LIG1-221ENST00000613670 EXOC5O00471 708 aa14.1□□□□□ -0.15
LIG1-221ENST00000613670 NDUFAB1O14561 156 aa14.1□□□□□ -0.15
LIG1-221ENST00000613670 ATP1A2P50993 1020 aa14.1□□□□□ -0.15
LIG1-221ENST00000613670 CDR1P51861 262 aa14.1□□□□□ -0.15
LIG1-221ENST00000613670 C2orf54Q08AI8 447 aa14.1□□□□□ -0.15
LIG1-221ENST00000613670 RICTORQ6R327 1708 aa14.1□□□□□ -0.15
LIG1-221ENST00000613670 AMPD3Q01432 767 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 INF2Q27J81 1249 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 DYMQ7RTS9 669 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 CCDC24Q8N4L8 307 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 BCAS4Q8TDM0 211 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 MED4Q9NPJ6 270 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 BMP2KQ9NSY1 1161 aaPredicted RBP14.09□□□□□ -0.15
LIG1-221ENST00000613670 ADD3Q9UEY8 706 aaKnown RBP14.09□□□□□ -0.15
LIG1-221ENST00000613670 MROH5Q6ZUA9 1318 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 BAZ2BQ9UIF8 2168 aaKnown RBP14.09□□□□□ -0.15
LIG1-221ENST00000613670 OPA1O60313 960 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 TSPY3P0CV98 308 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 TSPY8P0CW00 308 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 CD44P16070 742 aaKnown RBP14.09□□□□□ -0.15
LIG1-221ENST00000613670 KCTD16Q68DU8 428 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 ISCA1Q9BUE6 129 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 IFIH1Q9BYX4 1025 aaKnown RBP14.09□□□□□ -0.15
LIG1-221ENST00000613670 EPB41L4AQ9HCS5 686 aaPredicted RBP14.09□□□□□ -0.15
LIG1-221ENST00000613670 RIPOR2Q9Y4F9 1068 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 USP8P40818 1118 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 PTPROQ16827 1216 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 PPM1EQ8WY54 764 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 TFCP2L1Q9NZI6 479 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 TTC26A0AVF1 554 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 H7C1D1 291 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 GYPCP04921 128 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 MAGEA1P43355 309 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 VAV2P52735 878 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 TCP11X2Q5H9J9 407 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 C8orf74Q6P047 294 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 NLRC4Q9NPP4 1024 aa14.09□□□□□ -0.15
LIG1-221ENST00000613670 ACTN4O43707 911 aaKnown RBP14.08□□□□□ -0.16
LIG1-221ENST00000613670 ATP6V1AP38606 617 aa14.08□□□□□ -0.16
LIG1-221ENST00000613670 GNGT1P63211 74 aa14.08□□□□□ -0.16
LIG1-221ENST00000613670 SLC7A5Q01650 507 aa14.08□□□□□ -0.16
LIG1-221ENST00000613670 CFAP58Q5T655 872 aa14.08□□□□□ -0.16
LIG1-221ENST00000613670 WDR19Q8NEZ3 1342 aa14.08□□□□□ -0.16
LIG1-221ENST00000613670 TSG101Q99816 390 aa14.08□□□□□ -0.16
LIG1-221ENST00000613670 UBA5Q9GZZ9 404 aa14.08□□□□□ -0.16
LIG1-221ENST00000613670 SCG2P13521 617 aa14.08□□□□□ -0.16
LIG1-221ENST00000613670 HPDP32754 393 aaPredicted RBP14.08□□□□□ -0.16
LIG1-221ENST00000613670 RRAGAQ7L523 313 aa14.08□□□□□ -0.16
LIG1-221ENST00000613670 OTUD6BQ8N6M0 293 aa14.08□□□□□ -0.16
LIG1-221ENST00000613670 TUBGCP2Q9BSJ2 902 aa14.08□□□□□ -0.16
LIG1-221ENST00000613670 SEPT11Q9NVA2 429 aaKnown RBP14.08□□□□□ -0.16
LIG1-221ENST00000613670 NTRK3Q16288 839 aa14.08□□□□□ -0.16
LIG1-221ENST00000613670 ZNF579Q8NAF0 562 aaKnown RBP14.08□□□□□ -0.16
LIG1-221ENST00000613670 SAMM50Q9Y512 469 aa14.08□□□□□ -0.16
LIG1-221ENST00000613670 RIMBP3CA6NJZ7 1639 aa14.07□□□□□ -0.16
LIG1-221ENST00000613670 RIMBP3BA6NNM3 1639 aa14.07□□□□□ -0.16
LIG1-221ENST00000613670 RIMBP3Q9UFD9 1639 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms