RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 STK25O00506 426 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 KIAA0355O15063 1070 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 GTPBP6O43824 516 aaPredicted RBP7.58□□□□□ -1.2
CUX1-220ENST00000607092 BCAR3O75815 825 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 CLTBP09497 229 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 AKR1A1P14550 325 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 FOSL2P15408 326 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 ADCYAP1R1P41586 468 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 PLCD1P51178 756 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 TLE2Q04725 743 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 ICA1Q05084 483 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 FPGSQ05932 587 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 LRRC41Q15345 812 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 TRIM60Q495X7 471 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 AACSQ86V21 672 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 ITPRIPQ8IWB1 547 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 TMEM57Q8N5G2 664 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 NPLOC4Q8TAT6 608 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 EAF2Q96CJ1 260 aaPredicted RBP7.58□□□□□ -1.2
CUX1-220ENST00000607092 MAML3Q96JK9 1138 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 RNPC3Q96LT9 517 aaKnown RBP7.58□□□□□ -1.2
CUX1-220ENST00000607092 MMP19Q99542 508 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 TINF2Q9BSI4 451 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 SEZ6LQ9BYH1 1024 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 MTIF3Q9H2K0 278 aaKnown RBP7.58□□□□□ -1.2
CUX1-220ENST00000607092 VCPKMTQ9H867 229 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 KANSL2Q9H9L4 492 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 ZNF287Q9HBT7 754 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 GOPCQ9HD26 462 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 PDLIM7Q9NR12 457 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.58□□□□□ -1.2
CUX1-220ENST00000607092 MYH1P12882 1939 aa7.58□□□□□ -1.2
CUX1-220ENST00000607092 SPTBN5Q9NRC6 3674 aaKnown RBP7.57□□□□□ -1.2
CUX1-220ENST00000607092 PEX10O60683 326 aa7.57□□□□□ -1.2
CUX1-220ENST00000607092 IFIT2P09913 472 aaKnown RBP7.57□□□□□ -1.2
CUX1-220ENST00000607092 FDX1P10109 184 aa7.57□□□□□ -1.2
CUX1-220ENST00000607092 PDE6AP16499 860 aa7.57□□□□□ -1.2
CUX1-220ENST00000607092 STAT3P40763 770 aa7.57□□□□□ -1.2
CUX1-220ENST00000607092 NBR1Q14596 966 aa7.57□□□□□ -1.2
CUX1-220ENST00000607092 SHHQ15465 462 aa7.57□□□□□ -1.2
CUX1-220ENST00000607092 SHROOM1Q2M3G4 852 aaPredicted RBP7.57□□□□□ -1.2
CUX1-220ENST00000607092 POTEEQ6S8J3 1075 aa7.57□□□□□ -1.2
CUX1-220ENST00000607092 RIOX2Q8IUF8 465 aa7.57□□□□□ -1.2
CUX1-220ENST00000607092 RASEFQ8IZ41 740 aa7.57□□□□□ -1.2
CUX1-220ENST00000607092 PCSK9Q8NBP7 692 aaKnown RBP7.57□□□□□ -1.2
CUX1-220ENST00000607092 TRPV1Q8NER1 839 aa7.57□□□□□ -1.2
CUX1-220ENST00000607092 BADQ92934 168 aa7.57□□□□□ -1.2
CUX1-220ENST00000607092 KIF1BPQ96EK5 621 aa7.57□□□□□ -1.2
CUX1-220ENST00000607092 GLT1D1Q96MS3 346 aa7.57□□□□□ -1.2
CUX1-220ENST00000607092 FAM161BQ96MY7 647 aa7.57□□□□□ -1.2
CUX1-220ENST00000607092 TEX13BQ9BXU2 312 aa7.57□□□□□ -1.2
CUX1-220ENST00000607092 DCP1AQ9NPI6 582 aaPredicted RBP7.57□□□□□ -1.2
CUX1-220ENST00000607092 TMEM39AQ9NV64 488 aa7.57□□□□□ -1.2
CUX1-220ENST00000607092 FBXO40Q9UH90 709 aa7.57□□□□□ -1.2
CUX1-220ENST00000607092 FAM184BQ9ULE4 1060 aa7.57□□□□□ -1.2
CUX1-220ENST00000607092 CTDP1Q9Y5B0 961 aaPredicted RBP7.57□□□□□ -1.2
CUX1-220ENST00000607092 ELP1O95163 1332 aa7.56□□□□□ -1.2
CUX1-220ENST00000607092 SYNGAP1Q96PV0 1343 aa7.56□□□□□ -1.2
CUX1-220ENST00000607092 CDK5RAP2Q96SN8 1893 aa7.56□□□□□ -1.2
CUX1-220ENST00000607092 TLR3O15455 904 aaKnown RBP7.56□□□□□ -1.2
CUX1-220ENST00000607092 COBLO75128 1261 aa7.56□□□□□ -1.2
CUX1-220ENST00000607092 RAB11FIP3O75154 756 aa7.56□□□□□ -1.2
CUX1-220ENST00000607092 GUCY1A2P33402 732 aa7.56□□□□□ -1.2
CUX1-220ENST00000607092 PPIGQ13427 754 aaKnown RBP eCLIP7.56□□□□□ -1.24e-10■■■□□ 14.9
CUX1-220ENST00000607092 LRRFIP1Q32MZ4 808 aaKnown RBP7.56□□□□□ -1.2
CUX1-220ENST00000607092 FAM47AQ5JRC9 791 aa7.56□□□□□ -1.2
CUX1-220ENST00000607092 TJAP1Q5JTD0 557 aa7.56□□□□□ -1.2
CUX1-220ENST00000607092 PPP4R3BQ5MIZ7 849 aa7.56□□□□□ -1.2
CUX1-220ENST00000607092 PSRC1Q6PGN9 363 aaPredicted RBP7.56□□□□□ -1.2
CUX1-220ENST00000607092 ANKRD33Q7Z3H0 272 aa7.56□□□□□ -1.2
CUX1-220ENST00000607092 RPAP2Q8IXW5 612 aaPredicted RBP7.56□□□□□ -1.2
CUX1-220ENST00000607092 ATG4CQ96DT6 458 aa7.56□□□□□ -1.2
CUX1-220ENST00000607092 DDX11Q96FC9 970 aa7.56□□□□□ -1.2
CUX1-220ENST00000607092 GAS2L1Q99501 681 aaPredicted RBP7.56□□□□□ -1.2
CUX1-220ENST00000607092 PRDM6Q9NQX0 595 aa7.56□□□□□ -1.2
CUX1-220ENST00000607092 STARD7Q9NQZ5 370 aa7.56□□□□□ -1.2
CUX1-220ENST00000607092 ARPP21Q9UBL0 812 aaPredicted RBP7.56□□□□□ -1.2
CUX1-220ENST00000607092 SYNPO2Q9UMS6 1093 aa7.56□□□□□ -1.2
CUX1-220ENST00000607092 ADAMTS5Q9UNA0 930 aa7.56□□□□□ -1.2
CUX1-220ENST00000607092 VCANP13611 3396 aa7.56□□□□□ -1.2
CUX1-220ENST00000607092 ZNF532Q9HCE3 1301 aa7.55□□□□□ -1.2
CUX1-220ENST00000607092 FRMPD3Q5JV73 1810 aa7.55□□□□□ -1.2
CUX1-220ENST00000607092 A0A1W2PQ45 241 aaPredicted RBP7.55□□□□□ -1.2
CUX1-220ENST00000607092 A0A1W2PQY0 241 aa7.55□□□□□ -1.2
CUX1-220ENST00000607092 A0A1W2PRG0 241 aa7.55□□□□□ -1.2
CUX1-220ENST00000607092 GOLIM4O00461 696 aa7.55□□□□□ -1.2
CUX1-220ENST00000607092 VWA5AO00534 786 aa7.55□□□□□ -1.2
CUX1-220ENST00000607092 PQBP1O60828 265 aaKnown RBP7.55□□□□□ -1.2
CUX1-220ENST00000607092 CABYRO75952 493 aa7.55□□□□□ -1.2
CUX1-220ENST00000607092 C9orf50Q5SZB4 431 aa7.55□□□□□ -1.2
CUX1-220ENST00000607092 CEP85Q6P2H3 762 aa7.55□□□□□ -1.2
CUX1-220ENST00000607092 GIMAP6Q6P9H5 292 aa7.55□□□□□ -1.2
CUX1-220ENST00000607092 CCDC129Q6ZRS4 1044 aa7.55□□□□□ -1.2
CUX1-220ENST00000607092 ZNF467Q7Z7K2 595 aaPredicted RBP7.55□□□□□ -1.2
CUX1-220ENST00000607092 TMEM199Q8N511 208 aa7.55□□□□□ -1.2
CUX1-220ENST00000607092 PRPF38AQ8NAV1 312 aaKnown RBP7.55□□□□□ -1.2
CUX1-220ENST00000607092 SLC44A5Q8NCS7 719 aa7.55□□□□□ -1.2
CUX1-220ENST00000607092 IL27Q8NEV9 243 aa7.55□□□□□ -1.2
CUX1-220ENST00000607092 RHPN1Q8TCX5 695 aa7.55□□□□□ -1.2
CUX1-220ENST00000607092 FERMT2Q96AC1 680 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms