RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 CYP2D6P10635 497 aa11.49□□□□□ -0.57
VRK3-224ENST00000601849 EEF2P13639 858 aaKnown RBP11.49□□□□□ -0.57
VRK3-224ENST00000601849 TMEM132BQ14DG7 1078 aa11.49□□□□□ -0.57
VRK3-224ENST00000601849 LRRC41Q15345 812 aa11.49□□□□□ -0.57
VRK3-224ENST00000601849 LRRFIP1Q32MZ4 808 aaKnown RBP11.49□□□□□ -0.57
VRK3-224ENST00000601849 PRAMEF19Q5SWL8 479 aa11.49□□□□□ -0.57
VRK3-224ENST00000601849 C1orf53Q5VUE5 145 aa11.49□□□□□ -0.57
VRK3-224ENST00000601849 ANO1Q5XXA6 986 aa11.49□□□□□ -0.57
VRK3-224ENST00000601849 C16orf86Q6ZW13 317 aa11.49□□□□□ -0.57
VRK3-224ENST00000601849 SLC44A5Q8NCS7 719 aa11.49□□□□□ -0.57
VRK3-224ENST00000601849 NUP133Q8WUM0 1156 aa11.49□□□□□ -0.57
VRK3-224ENST00000601849 DDX11Q96FC9 970 aa11.49□□□□□ -0.57
VRK3-224ENST00000601849 GPATCH3Q96I76 525 aa11.49□□□□□ -0.57
VRK3-224ENST00000601849 TINF2Q9BSI4 451 aa11.49□□□□□ -0.57
VRK3-224ENST00000601849 LRRCC1Q9C099 1032 aa11.49□□□□□ -0.57
VRK3-224ENST00000601849 ZBTB40Q9NUA8 1239 aa11.49□□□□□ -0.57
VRK3-224ENST00000601849 ARPP21Q9UBL0 812 aaPredicted RBP11.49□□□□□ -0.57
VRK3-224ENST00000601849 ZBED9Q6R2W3 1325 aa11.49□□□□□ -0.57
VRK3-224ENST00000601849 LAMA2P24043 3122 aaKnown RBP11.48□□□□□ -0.57
VRK3-224ENST00000601849 PRKAB2O43741 272 aa11.48□□□□□ -0.57
VRK3-224ENST00000601849 IGHA2P01877 340 aa11.48□□□□□ -0.57
VRK3-224ENST00000601849 AKR1A1P14550 325 aa11.48□□□□□ -0.57
VRK3-224ENST00000601849 TRIM60Q495X7 471 aa11.48□□□□□ -0.57
VRK3-224ENST00000601849 RIOX2Q8IUF8 465 aa11.48□□□□□ -0.57
VRK3-224ENST00000601849 ZNF444Q8N0Y2 327 aaPredicted RBP11.48□□□□□ -0.57
VRK3-224ENST00000601849 MSL3Q8N5Y2 521 aaKnown RBP11.48□□□□□ -0.57
VRK3-224ENST00000601849 FERMT2Q96AC1 680 aa11.48□□□□□ -0.57
VRK3-224ENST00000601849 SPC25Q9HBM1 224 aa11.48□□□□□ -0.57
VRK3-224ENST00000601849 ADAMTS5Q9UNA0 930 aa11.48□□□□□ -0.57
VRK3-224ENST00000601849 COG6Q9Y2V7 657 aa11.48□□□□□ -0.57
VRK3-224ENST00000601849 VWA5AO00534 786 aa11.47□□□□□ -0.57
VRK3-224ENST00000601849 ZBED4O75132 1171 aa11.47□□□□□ -0.57
VRK3-224ENST00000601849 RAG1P15918 1043 aa11.47□□□□□ -0.57
VRK3-224ENST00000601849 GIMAP6Q6P9H5 292 aa11.47□□□□□ -0.57
VRK3-224ENST00000601849 SIAH1Q8IUQ4 282 aa11.47□□□□□ -0.57
VRK3-224ENST00000601849 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.47□□□□□ -0.57
VRK3-224ENST00000601849 PRPF38AQ8NAV1 312 aaKnown RBP11.47□□□□□ -0.57
VRK3-224ENST00000601849 BADQ92934 168 aa11.47□□□□□ -0.57
VRK3-224ENST00000601849 FAM161BQ96MY7 647 aa11.47□□□□□ -0.57
VRK3-224ENST00000601849 TSEN34Q9BSV6 310 aaKnown RBP11.47□□□□□ -0.57
VRK3-224ENST00000601849 FAM184BQ9ULE4 1060 aa11.47□□□□□ -0.57
VRK3-224ENST00000601849 PPP1R9AQ9ULJ8 1098 aa11.47□□□□□ -0.57
VRK3-224ENST00000601849 UNC80Q8N2C7 3258 aa11.47□□□□□ -0.57
VRK3-224ENST00000601849 NAV1Q8NEY1 1877 aa11.46□□□□□ -0.57
VRK3-224ENST00000601849 DCDC2CA8MYV0 355 aa11.46□□□□□ -0.57
VRK3-224ENST00000601849 MINDY4BA8MYZ0 360 aa11.46□□□□□ -0.57
VRK3-224ENST00000601849 PGK2P07205 417 aa11.46□□□□□ -0.57
VRK3-224ENST00000601849 CLTBP09497 229 aa11.46□□□□□ -0.57
VRK3-224ENST00000601849 GNAT2P19087 354 aa11.46□□□□□ -0.57
VRK3-224ENST00000601849 SMAD3P84022 425 aaKnown RBP11.46□□□□□ -0.57
VRK3-224ENST00000601849 TLE2Q04725 743 aa11.46□□□□□ -0.57
VRK3-224ENST00000601849 SNX17Q15036 470 aa11.46□□□□□ -0.57
VRK3-224ENST00000601849 SHHQ15465 462 aa11.46□□□□□ -0.57
VRK3-224ENST00000601849 FAM47AQ5JRC9 791 aa11.46□□□□□ -0.57
VRK3-224ENST00000601849 KIAA1755Q5JYT7 1200 aa11.46□□□□□ -0.57
VRK3-224ENST00000601849 DIEXFQ68CQ4 756 aaKnown RBP11.46□□□□□ -0.57
VRK3-224ENST00000601849 CTR9Q6PD62 1173 aa11.46□□□□□ -0.57
VRK3-224ENST00000601849 CCDC174Q6PII3 467 aa11.46□□□□□ -0.57
VRK3-224ENST00000601849 MIER1Q8N108 512 aa11.46□□□□□ -0.57
VRK3-224ENST00000601849 SLF1Q9BQI6 1058 aa11.46□□□□□ -0.57
VRK3-224ENST00000601849 TEX13BQ9BXU2 312 aa11.46□□□□□ -0.57
VRK3-224ENST00000601849 PHF24Q9UPV7 400 aa11.46□□□□□ -0.57
VRK3-224ENST00000601849 ZNF236Q9UL36 1845 aa11.45□□□□□ -0.58
VRK3-224ENST00000601849 CYP2D7A0A087X1C5 515 aa11.45□□□□□ -0.58
VRK3-224ENST00000601849 MOXD2PA6NHM9 499 aa11.45□□□□□ -0.58
VRK3-224ENST00000601849 PGK1P00558 417 aa11.45□□□□□ -0.58
VRK3-224ENST00000601849 APPP05067 770 aa11.45□□□□□ -0.58
VRK3-224ENST00000601849 ZFYP08048 801 aaPredicted RBP11.45□□□□□ -0.58
VRK3-224ENST00000601849 SLC3A2P08195 630 aaKnown RBP11.45□□□□□ -0.58
VRK3-224ENST00000601849 SLC4A3P48751 1232 aa11.45□□□□□ -0.58
VRK3-224ENST00000601849 EVX2Q03828 476 aa11.45□□□□□ -0.58
VRK3-224ENST00000601849 ZNF792Q3KQV3 632 aa11.45□□□□□ -0.58
VRK3-224ENST00000601849 SBK1Q52WX2 424 aa11.45□□□□□ -0.58
VRK3-224ENST00000601849 FAM83BQ5T0W9 1011 aa11.45□□□□□ -0.58
VRK3-224ENST00000601849 SNRNP48Q6IEG0 339 aaKnown RBP11.45□□□□□ -0.58
VRK3-224ENST00000601849 CLEC10AQ8IUN9 316 aa11.45□□□□□ -0.58
VRK3-224ENST00000601849 VTI1AQ96AJ9 217 aa11.45□□□□□ -0.58
VRK3-224ENST00000601849 NACAP1Q9BZK3 213 aa11.45□□□□□ -0.58
VRK3-224ENST00000601849 STARD7Q9NQZ5 370 aa11.45□□□□□ -0.58
VRK3-224ENST00000601849 PDLIM7Q9NR12 457 aa11.45□□□□□ -0.58
VRK3-224ENST00000601849 ECHDC1Q9NTX5 307 aa11.45□□□□□ -0.58
VRK3-224ENST00000601849 TMEM39AQ9NV64 488 aa11.45□□□□□ -0.58
VRK3-224ENST00000601849 NYAP2Q9P242 653 aa11.45□□□□□ -0.58
VRK3-224ENST00000601849 FBXO40Q9UH90 709 aa11.45□□□□□ -0.58
VRK3-224ENST00000601849 MROH7Q68CQ1 1323 aa11.44□□□□□ -0.58
VRK3-224ENST00000601849 SYNGAP1Q96PV0 1343 aa11.44□□□□□ -0.58
VRK3-224ENST00000601849 F5H6K3 240 aa11.44□□□□□ -0.58
VRK3-224ENST00000601849 PQBP1O60828 265 aaKnown RBP11.44□□□□□ -0.58
VRK3-224ENST00000601849 FDX1P10109 184 aa11.44□□□□□ -0.58
VRK3-224ENST00000601849 TDO2P48775 406 aa11.44□□□□□ -0.58
VRK3-224ENST00000601849 KLRC3Q07444 240 aa11.44□□□□□ -0.58
VRK3-224ENST00000601849 PPP4R3BQ5MIZ7 849 aa11.44□□□□□ -0.58
VRK3-224ENST00000601849 SIRT2Q8IXJ6 389 aa11.44□□□□□ -0.58
VRK3-224ENST00000601849 ANKRD35Q8N283 1001 aa11.44□□□□□ -0.58
VRK3-224ENST00000601849 PCSK9Q8NBP7 692 aaKnown RBP11.44□□□□□ -0.58
VRK3-224ENST00000601849 GLT1D1Q96MS3 346 aa11.44□□□□□ -0.58
VRK3-224ENST00000601849 TOX2Q96NM4 488 aa11.44□□□□□ -0.58
VRK3-224ENST00000601849 STRBPQ96SI9 672 aaKnown RBP11.44□□□□□ -0.58
VRK3-224ENST00000601849 PUS7LQ9H0K6 701 aaKnown RBP11.44□□□□□ -0.58
VRK3-224ENST00000601849 SEMA6BQ9H3T3 888 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms