RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 BMP3P12645 472 aa22.69■■□□□ 1.22
UPF1-209ENST00000600310 PSMA5P28066 241 aa22.69■■□□□ 1.22
UPF1-209ENST00000600310 SLC1A4P43007 532 aa22.69■■□□□ 1.22
UPF1-209ENST00000600310 GCLCP48506 637 aaPredicted RBP22.69■■□□□ 1.22
UPF1-209ENST00000600310 EXOSC10Q01780 885 aaKnown RBP22.69■■□□□ 1.22
UPF1-209ENST00000600310 COG2Q14746 738 aa22.69■■□□□ 1.22
UPF1-209ENST00000600310 WTAPQ15007 396 aa22.69■■□□□ 1.22
UPF1-209ENST00000600310 C17orf99Q6UX52 265 aa22.69■■□□□ 1.22
UPF1-209ENST00000600310 PNMA1Q8ND90 353 aa22.69■■□□□ 1.22
UPF1-209ENST00000600310 DCAF4Q8WV16 495 aa22.69■■□□□ 1.22
UPF1-209ENST00000600310 MYH4Q9Y623 1939 aa22.69■■□□□ 1.22
UPF1-209ENST00000600310 ANAPC15P60006 121 aa22.68■■□□□ 1.22
UPF1-209ENST00000600310 HERVK_113P62684 666 aa22.68■■□□□ 1.22
UPF1-209ENST00000600310 LBX2Q6XYB7 198 aa22.68■■□□□ 1.22
UPF1-209ENST00000600310 GTF3C2Q8WUA4 911 aaPredicted RBP22.68■■□□□ 1.22
UPF1-209ENST00000600310 HOXC10Q9NYD6 342 aa22.68■■□□□ 1.22
UPF1-209ENST00000600310 MYPNQ86TC9 1320 aa22.67■■□□□ 1.22
UPF1-209ENST00000600310 SH2B2O14492 632 aaPredicted RBP22.67■■□□□ 1.22
UPF1-209ENST00000600310 FLOT1O75955 427 aa22.67■■□□□ 1.22
UPF1-209ENST00000600310 SNHG28P0DPA3 235 aa22.67■■□□□ 1.22
UPF1-209ENST00000600310 PDHBP11177 359 aa22.67■■□□□ 1.22
UPF1-209ENST00000600310 BCRP11274 1271 aa22.67■■□□□ 1.22
UPF1-209ENST00000600310 DSG3P32926 999 aa22.67■■□□□ 1.22
UPF1-209ENST00000600310 LBX1P52954 281 aa22.67■■□□□ 1.22
UPF1-209ENST00000600310 BLOC1S2Q6QNY1 142 aa22.67■■□□□ 1.22
UPF1-209ENST00000600310 TMTC2Q8N394 836 aa22.67■■□□□ 1.22
UPF1-209ENST00000600310 TM6SF1Q9BZW5 370 aa22.67■■□□□ 1.22
UPF1-209ENST00000600310 LY9Q9HBG7 655 aa22.67■■□□□ 1.22
UPF1-209ENST00000600310 SENP2Q9HC62 589 aa22.67■■□□□ 1.22
UPF1-209ENST00000600310 CPA4Q9UI42 421 aa22.67■■□□□ 1.22
UPF1-209ENST00000600310 MTMR7Q9Y216 660 aa22.67■■□□□ 1.22
UPF1-209ENST00000600310 SPDYE16A6NNV3 312 aaPredicted RBP22.66■■□□□ 1.22
UPF1-209ENST00000600310 LIFRP42702 1097 aa22.66■■□□□ 1.22
UPF1-209ENST00000600310 IL17RAQ96F46 866 aa22.66■■□□□ 1.22
UPF1-209ENST00000600310 GPHNQ9NQX3 736 aaPredicted RBP22.66■■□□□ 1.22
UPF1-209ENST00000600310 FBXO28Q9NVF7 368 aa22.66■■□□□ 1.22
UPF1-209ENST00000600310 FEM1BQ9UK73 627 aa22.66■■□□□ 1.22
UPF1-209ENST00000600310 PLA2G6O60733 806 aa22.65■■□□□ 1.22
UPF1-209ENST00000600310 RPS6KB1P23443 525 aa22.65■■□□□ 1.22
UPF1-209ENST00000600310 POTEEQ6S8J3 1075 aa22.65■■□□□ 1.22
UPF1-209ENST00000600310 RASGRP2Q7LDG7 609 aa22.65■■□□□ 1.22
UPF1-209ENST00000600310 CHMP4CQ96CF2 233 aa22.65■■□□□ 1.22
UPF1-209ENST00000600310 LRRC2Q9BYS8 371 aa22.65■■□□□ 1.22
UPF1-209ENST00000600310 ZSWIM6Q9HCJ5 1215 aa22.65■■□□□ 1.22
UPF1-209ENST00000600310 RBPJLQ9UBG7 517 aa22.65■■□□□ 1.22
UPF1-209ENST00000600310 PPP1R9AQ9ULJ8 1098 aa22.65■■□□□ 1.22
UPF1-209ENST00000600310 CPA1P15085 419 aa22.64■■□□□ 1.21
UPF1-209ENST00000600310 CASTP20810 708 aaKnown RBP22.64■■□□□ 1.21
UPF1-209ENST00000600310 SP3Q02447 781 aa22.64■■□□□ 1.21
UPF1-209ENST00000600310 ZNF543Q08ER8 600 aa22.64■■□□□ 1.21
UPF1-209ENST00000600310 FAM110CQ1W6H9 321 aa22.64■■□□□ 1.21
UPF1-209ENST00000600310 CCDC96Q2M329 555 aa22.64■■□□□ 1.21
UPF1-209ENST00000600310 KCTD1Q719H9 257 aa22.64■■□□□ 1.21
UPF1-209ENST00000600310 FAM160B2Q86V87 743 aa22.64■■□□□ 1.21
UPF1-209ENST00000600310 ANKRD13CQ8N6S4 541 aa22.64■■□□□ 1.21
UPF1-209ENST00000600310 ZNF296Q8WUU4 475 aaPredicted RBP22.64■■□□□ 1.21
UPF1-209ENST00000600310 TCEANC2Q96MN5 208 aa22.64■■□□□ 1.21
UPF1-209ENST00000600310 SLF1Q9BQI6 1058 aa22.64■■□□□ 1.21
UPF1-209ENST00000600310 MORF4L1Q9UBU8 362 aa22.64■■□□□ 1.21
UPF1-209ENST00000600310 ADAMTS5Q9UNA0 930 aa22.64■■□□□ 1.21
UPF1-209ENST00000600310 TMEM232C9JQI7 657 aa22.63■■□□□ 1.21
UPF1-209ENST00000600310 FKTNO75072 461 aa22.63■■□□□ 1.21
UPF1-209ENST00000600310 STAT2P52630 851 aa22.63■■□□□ 1.21
UPF1-209ENST00000600310 PRPF38AQ8NAV1 312 aaKnown RBP22.63■■□□□ 1.21
UPF1-209ENST00000600310 CHURC1Q8WUH1 139 aa22.63■■□□□ 1.21
UPF1-209ENST00000600310 ATG4CQ96DT6 458 aa22.63■■□□□ 1.21
UPF1-209ENST00000600310 TXNRD2Q9NNW7 524 aa22.63■■□□□ 1.21
UPF1-209ENST00000600310 ISY1Q9ULR0 285 aaKnown RBP22.63■■□□□ 1.21
UPF1-209ENST00000600310 RABGAP1Q9Y3P9 1069 aa22.63■■□□□ 1.21
UPF1-209ENST00000600310 FRMPD2Q68DX3 1309 aaPredicted RBP22.62■■□□□ 1.21
UPF1-209ENST00000600310 TROAPQ12815 778 aa22.62■■□□□ 1.21
UPF1-209ENST00000600310 GPATCH4Q5T3I0 446 aaKnown RBP22.62■■□□□ 1.21
UPF1-209ENST00000600310 BTNL9Q6UXG8 535 aa22.62■■□□□ 1.21
UPF1-209ENST00000600310 RUFY3Q7L099 469 aa22.62■■□□□ 1.21
UPF1-209ENST00000600310 CATIPQ7Z7H3 387 aa22.62■■□□□ 1.21
UPF1-209ENST00000600310 SGMS1Q86VZ5 419 aa22.62■■□□□ 1.21
UPF1-209ENST00000600310 FBXL16Q8N461 479 aa22.62■■□□□ 1.21
UPF1-209ENST00000600310 MB21D1Q8N884 522 aa22.62■■□□□ 1.21
UPF1-209ENST00000600310 CCDC69A6NI79 296 aa22.61■■□□□ 1.21
UPF1-209ENST00000600310 CNMDO75829 334 aa22.61■■□□□ 1.21
UPF1-209ENST00000600310 ASPRV1Q53RT3 343 aa22.61■■□□□ 1.21
UPF1-209ENST00000600310 TTBK2Q6IQ55 1244 aa22.61■■□□□ 1.21
UPF1-209ENST00000600310 SAMD1Q6SPF0 538 aaPredicted RBP22.61■■□□□ 1.21
UPF1-209ENST00000600310 NFXL1Q6ZNB6 911 aa22.61■■□□□ 1.21
UPF1-209ENST00000600310 ZNF654Q8IZM8 581 aa22.61■■□□□ 1.21
UPF1-209ENST00000600310 GPRC5AQ8NFJ5 357 aa22.61■■□□□ 1.21
UPF1-209ENST00000600310 PAGR1Q9BTK6 254 aa22.61■■□□□ 1.21
UPF1-209ENST00000600310 BACH2Q9BYV9 841 aa22.61■■□□□ 1.21
UPF1-209ENST00000600310 GPCPD1Q9NPB8 672 aa22.61■■□□□ 1.21
UPF1-209ENST00000600310 CYP46A1Q9Y6A2 500 aa22.61■■□□□ 1.21
UPF1-209ENST00000600310 VWA5AO00534 786 aa22.6■■□□□ 1.21
UPF1-209ENST00000600310 DDAH1O94760 285 aa22.6■■□□□ 1.21
UPF1-209ENST00000600310 PARP1P09874 1014 aaKnown RBP22.6■■□□□ 1.21
UPF1-209ENST00000600310 ERVK-9P63128 1117 aa22.6■■□□□ 1.21
UPF1-209ENST00000600310 ERVK-24P63145 666 aa22.6■■□□□ 1.21
UPF1-209ENST00000600310 KIFC2Q96AC6 838 aa22.6■■□□□ 1.21
UPF1-209ENST00000600310 AGXT2Q9BYV1 514 aa22.6■■□□□ 1.21
UPF1-209ENST00000600310 C22orf23Q9BZE7 217 aa22.6■■□□□ 1.21
UPF1-209ENST00000600310 UPF2Q9HAU5 1272 aaKnown RBP22.6■■□□□ 1.21
UPF1-209ENST00000600310 BTBD7Q9P203 1132 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms