RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 PLXNB2O15031 1838 aa16.73■□□□□ 0.27
LIG1-218ENST00000599322 SLC15A5A6NIM6 579 aa16.73■□□□□ 0.27
LIG1-218ENST00000599322 ZNF213O14771 459 aa16.73■□□□□ 0.27
LIG1-218ENST00000599322 SLC25A27O95847 323 aa16.73■□□□□ 0.27
LIG1-218ENST00000599322 COPB2P35606 906 aa16.73■□□□□ 0.27
LIG1-218ENST00000599322 FAM83BQ5T0W9 1011 aa16.73■□□□□ 0.27
LIG1-218ENST00000599322 TTC22Q5TAA0 569 aa16.73■□□□□ 0.27
LIG1-218ENST00000599322 VPS53Q5VIR6 699 aa16.73■□□□□ 0.27
LIG1-218ENST00000599322 MFSD6Q6ZSS7 791 aa16.73■□□□□ 0.27
LIG1-218ENST00000599322 MKL1Q969V6 931 aa16.73■□□□□ 0.27
LIG1-218ENST00000599322 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.73■□□□□ 0.27
LIG1-218ENST00000599322 SPATC1LQ9H0A9 340 aa16.73■□□□□ 0.27
LIG1-218ENST00000599322 PORCNQ9H237 461 aa16.73■□□□□ 0.27
LIG1-218ENST00000599322 HMX1Q9NP08 348 aaPredicted RBP16.73■□□□□ 0.27
LIG1-218ENST00000599322 BTBD7Q9P203 1132 aa16.73■□□□□ 0.27
LIG1-218ENST00000599322 GJD2Q9UKL4 321 aa16.73■□□□□ 0.27
LIG1-218ENST00000599322 STX8Q9UNK0 236 aa16.73■□□□□ 0.27
LIG1-218ENST00000599322 ZMYM6O95789 1325 aa16.72■□□□□ 0.27
LIG1-218ENST00000599322 ZBED4O75132 1171 aa16.72■□□□□ 0.27
LIG1-218ENST00000599322 TFRCP02786 760 aaKnown RBP16.72■□□□□ 0.27
LIG1-218ENST00000599322 NEFLP07196 543 aa16.72■□□□□ 0.27
LIG1-218ENST00000599322 NT5C2P49902 561 aa16.72■□□□□ 0.27
LIG1-218ENST00000599322 FXR1P51114 621 aaKnown RBP eCLIP16.72■□□□□ 0.27
LIG1-218ENST00000599322 IKQ13123 557 aaPredicted RBP16.72■□□□□ 0.27
LIG1-218ENST00000599322 MAP2K5Q13163 448 aa16.72■□□□□ 0.27
LIG1-218ENST00000599322 MFSD14CQ5VZR4 134 aa16.72■□□□□ 0.27
LIG1-218ENST00000599322 DPP9Q86TI2 863 aa16.72■□□□□ 0.27
LIG1-218ENST00000599322 NCAPG2Q86XI2 1143 aa16.72■□□□□ 0.27
LIG1-218ENST00000599322 PRPF38AQ8NAV1 312 aaKnown RBP16.72■□□□□ 0.27
LIG1-218ENST00000599322 SHCBP1Q8NEM2 672 aa16.72■□□□□ 0.27
LIG1-218ENST00000599322 ATG4CQ96DT6 458 aa16.72■□□□□ 0.27
LIG1-218ENST00000599322 SLF1Q9BQI6 1058 aa16.72■□□□□ 0.27
LIG1-218ENST00000599322 COLQQ9Y215 455 aaPredicted RBP16.72■□□□□ 0.27
LIG1-218ENST00000599322 IGKV6D-41A0A0C4DH26 115 aa16.71■□□□□ 0.27
LIG1-218ENST00000599322 H0YGN5 161 aa16.71■□□□□ 0.27
LIG1-218ENST00000599322 ORC4O43929 436 aa16.71■□□□□ 0.27
LIG1-218ENST00000599322 PEX10O60683 326 aa16.71■□□□□ 0.27
LIG1-218ENST00000599322 CNMDO75829 334 aa16.71■□□□□ 0.27
LIG1-218ENST00000599322 NDUFB10O96000 172 aa16.71■□□□□ 0.27
LIG1-218ENST00000599322 PTPREP23469 700 aa16.71■□□□□ 0.27
LIG1-218ENST00000599322 IMMTQ16891 758 aaKnown RBP16.71■□□□□ 0.27
LIG1-218ENST00000599322 KIAA1755Q5JYT7 1200 aa16.71■□□□□ 0.27
LIG1-218ENST00000599322 SLFN13Q68D06 897 aa16.71■□□□□ 0.27
LIG1-218ENST00000599322 UBE2Q1Q7Z7E8 422 aa16.71■□□□□ 0.27
LIG1-218ENST00000599322 ZNF589Q86UQ0 364 aaPredicted RBP16.71■□□□□ 0.27
LIG1-218ENST00000599322 GMCL1P1Q8NEA9 526 aa16.71■□□□□ 0.27
LIG1-218ENST00000599322 APBA2Q99767 749 aa16.71■□□□□ 0.27
LIG1-218ENST00000599322 MOV10L1Q9BXT6 1211 aaKnown RBP16.71■□□□□ 0.27
LIG1-218ENST00000599322 FEM1BQ9UK73 627 aa16.71■□□□□ 0.27
LIG1-218ENST00000599322 PPP1R9AQ9ULJ8 1098 aa16.71■□□□□ 0.27
LIG1-218ENST00000599322 RPTORQ8N122 1335 aa16.7■□□□□ 0.26
LIG1-218ENST00000599322 PLIN4Q96Q06 1357 aa16.7■□□□□ 0.26
LIG1-218ENST00000599322 FDX1P10109 184 aa16.7■□□□□ 0.26
LIG1-218ENST00000599322 BMP3P12645 472 aa16.7■□□□□ 0.26
LIG1-218ENST00000599322 STAT3P40763 770 aa16.7■□□□□ 0.26
LIG1-218ENST00000599322 GJA8P48165 433 aa16.7■□□□□ 0.26
LIG1-218ENST00000599322 MORN1Q5T089 497 aa16.7■□□□□ 0.26
LIG1-218ENST00000599322 AKNAD1Q5T1N1 836 aa16.7■□□□□ 0.26
LIG1-218ENST00000599322 CHURC1Q8WUH1 139 aa16.7■□□□□ 0.26
LIG1-218ENST00000599322 ESR2Q92731 530 aa16.7■□□□□ 0.26
LIG1-218ENST00000599322 UNC93B1Q9H1C4 597 aa16.7■□□□□ 0.26
LIG1-218ENST00000599322 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.7■□□□□ 0.26
LIG1-218ENST00000599322 TRIOBPQ9H2D6 2365 aa16.69■□□□□ 0.26
LIG1-218ENST00000599322 SGPL1O95470 568 aa16.69■□□□□ 0.26
LIG1-218ENST00000599322 FCER1AP12319 257 aa16.69■□□□□ 0.26
LIG1-218ENST00000599322 ERCC3P19447 782 aa16.69■□□□□ 0.26
LIG1-218ENST00000599322 PDE4AP27815 886 aa16.69■□□□□ 0.26
LIG1-218ENST00000599322 SLC1A4P43007 532 aa16.69■□□□□ 0.26
LIG1-218ENST00000599322 HAND2P61296 217 aa16.69■□□□□ 0.26
LIG1-218ENST00000599322 CCDC178Q5BJE1 867 aa16.69■□□□□ 0.26
LIG1-218ENST00000599322 CENPQQ7L2Z9 268 aaPredicted RBP16.69■□□□□ 0.26
LIG1-218ENST00000599322 LRRC47Q8N1G4 583 aaKnown RBP16.69■□□□□ 0.26
LIG1-218ENST00000599322 U2AF1L4Q8WU68 220 aaKnown RBP16.69■□□□□ 0.26
LIG1-218ENST00000599322 KIFC2Q96AC6 838 aa16.69■□□□□ 0.26
LIG1-218ENST00000599322 DEFB118Q96PH6 123 aa16.69■□□□□ 0.26
LIG1-218ENST00000599322 DSCC1Q9BVC3 393 aa16.69■□□□□ 0.26
LIG1-218ENST00000599322 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.69■□□□□ 0.26
LIG1-218ENST00000599322 FBXO28Q9NVF7 368 aa16.69■□□□□ 0.26
LIG1-218ENST00000599322 VWA5AO00534 786 aa16.68■□□□□ 0.26
LIG1-218ENST00000599322 FOXP2O15409 715 aa16.68■□□□□ 0.26
LIG1-218ENST00000599322 KCTD2Q14681 263 aa16.68■□□□□ 0.26
LIG1-218ENST00000599322 FAM160B2Q86V87 743 aa16.68■□□□□ 0.26
LIG1-218ENST00000599322 ABRAQ8N0Z2 381 aa16.68■□□□□ 0.26
LIG1-218ENST00000599322 NUP88Q99567 741 aaPredicted RBP16.68■□□□□ 0.26
LIG1-218ENST00000599322 RAD50Q92878 1312 aa16.68■□□□□ 0.26
LIG1-218ENST00000599322 FGRP09769 529 aa16.67■□□□□ 0.26
LIG1-218ENST00000599322 TOP1P11387 765 aaKnown RBP16.67■□□□□ 0.26
LIG1-218ENST00000599322 PRKAR2AP13861 404 aaKnown RBP16.67■□□□□ 0.26
LIG1-218ENST00000599322 SLC4A3P48751 1232 aa16.67■□□□□ 0.26
LIG1-218ENST00000599322 STAT2P52630 851 aa16.67■□□□□ 0.26
LIG1-218ENST00000599322 GRB14Q14449 540 aa16.67■□□□□ 0.26
LIG1-218ENST00000599322 TMEM132BQ14DG7 1078 aa16.67■□□□□ 0.26
LIG1-218ENST00000599322 IQCA1Q86XH1 822 aa16.67■□□□□ 0.26
LIG1-218ENST00000599322 RIOX2Q8IUF8 465 aa16.67■□□□□ 0.26
LIG1-218ENST00000599322 STAG1Q8WVM7 1258 aa16.67■□□□□ 0.26
LIG1-218ENST00000599322 TRIB2Q92519 343 aa16.67■□□□□ 0.26
LIG1-218ENST00000599322 USP6NLQ92738 828 aa16.67■□□□□ 0.26
LIG1-218ENST00000599322 GMCL1Q96IK5 515 aa16.67■□□□□ 0.26
LIG1-218ENST00000599322 TTC14Q96N46 770 aa16.67■□□□□ 0.26
LIG1-218ENST00000599322 MMP19Q99542 508 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms