RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 SH2D4AQ9H788 454 aa12.04□□□□□ -0.48
LIG1-209ENST00000596104 FBXO28Q9NVF7 368 aa12.04□□□□□ -0.48
LIG1-209ENST00000596104 PHF24Q9UPV7 400 aa12.04□□□□□ -0.48
LIG1-209ENST00000596104 LTBP2Q14767 1821 aa12.04□□□□□ -0.48
LIG1-209ENST00000596104 ROBO3Q96MS0 1386 aa12.04□□□□□ -0.48
LIG1-209ENST00000596104 CHGBP05060 677 aa12.03□□□□□ -0.48
LIG1-209ENST00000596104 IFIT2P09913 472 aaKnown RBP12.03□□□□□ -0.48
LIG1-209ENST00000596104 ITGB8P26012 769 aa12.03□□□□□ -0.48
LIG1-209ENST00000596104 CDK8P49336 464 aa12.03□□□□□ -0.48
LIG1-209ENST00000596104 SMAD3P84022 425 aaKnown RBP12.03□□□□□ -0.48
LIG1-209ENST00000596104 HNRNPUQ00839 825 aaKnown RBP eCLIP12.03□□□□□ -0.48
LIG1-209ENST00000596104 ZNF792Q3KQV3 632 aa12.03□□□□□ -0.48
LIG1-209ENST00000596104 C16orf86Q6ZW13 317 aa12.03□□□□□ -0.48
LIG1-209ENST00000596104 RIOX2Q8IUF8 465 aa12.03□□□□□ -0.48
LIG1-209ENST00000596104 REPS2Q8NFH8 660 aa12.03□□□□□ -0.48
LIG1-209ENST00000596104 MMP19Q99542 508 aa12.03□□□□□ -0.48
LIG1-209ENST00000596104 TTYH1Q9H313 450 aaPredicted RBP12.03□□□□□ -0.48
LIG1-209ENST00000596104 XPNPEP3Q9NQH7 507 aa12.03□□□□□ -0.48
LIG1-209ENST00000596104 PAG1Q9NWQ8 432 aa12.03□□□□□ -0.48
LIG1-209ENST00000596104 ZNF214Q9UL59 606 aaPredicted RBP12.03□□□□□ -0.48
LIG1-209ENST00000596104 DIS3Q9Y2L1 958 aaKnown RBP12.03□□□□□ -0.48
LIG1-209ENST00000596104 NAV1Q8NEY1 1877 aa12.03□□□□□ -0.48
LIG1-209ENST00000596104 LAMA2P24043 3122 aaKnown RBP12.03□□□□□ -0.48
LIG1-209ENST00000596104 UNC80Q8N2C7 3258 aa12.03□□□□□ -0.48
LIG1-209ENST00000596104 USP17L12C9JPN9 530 aa12.02□□□□□ -0.49
LIG1-209ENST00000596104 USP17L21D6R901 530 aa12.02□□□□□ -0.49
LIG1-209ENST00000596104 APBB1O00213 710 aa12.02□□□□□ -0.49
LIG1-209ENST00000596104 VWA5AO00534 786 aa12.02□□□□□ -0.49
LIG1-209ENST00000596104 PGK1P00558 417 aa12.02□□□□□ -0.49
LIG1-209ENST00000596104 PGK2P07205 417 aa12.02□□□□□ -0.49
LIG1-209ENST00000596104 ZNF865P0CJ78 1059 aaPredicted RBP12.02□□□□□ -0.49
LIG1-209ENST00000596104 RARBP10826 455 aa12.02□□□□□ -0.49
LIG1-209ENST00000596104 EEF2P13639 858 aaKnown RBP12.02□□□□□ -0.49
LIG1-209ENST00000596104 TAL1P17542 331 aaPredicted RBP12.02□□□□□ -0.49
LIG1-209ENST00000596104 EPHB4P54760 987 aa12.02□□□□□ -0.49
LIG1-209ENST00000596104 SAMD1Q6SPF0 538 aaPredicted RBP12.02□□□□□ -0.49
LIG1-209ENST00000596104 TINF2Q9BSI4 451 aa12.02□□□□□ -0.49
LIG1-209ENST00000596104 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.02□□□□□ -0.49
LIG1-209ENST00000596104 BOLA2Q9H3K6 86 aa12.02□□□□□ -0.49
LIG1-209ENST00000596104 PPP1R9AQ9ULJ8 1098 aa12.02□□□□□ -0.49
LIG1-209ENST00000596104 ZBED9Q6R2W3 1325 aa12.02□□□□□ -0.49
LIG1-209ENST00000596104 KIAA0355O15063 1070 aa12.01□□□□□ -0.49
LIG1-209ENST00000596104 ADAMTS4O75173 837 aa12.01□□□□□ -0.49
LIG1-209ENST00000596104 CLTBP09497 229 aa12.01□□□□□ -0.49
LIG1-209ENST00000596104 ATP5JP18859 108 aa12.01□□□□□ -0.49
LIG1-209ENST00000596104 STAT3P40763 770 aa12.01□□□□□ -0.49
LIG1-209ENST00000596104 UBE3CQ15386 1083 aa12.01□□□□□ -0.49
LIG1-209ENST00000596104 RNF180Q86T96 592 aa12.01□□□□□ -0.49
LIG1-209ENST00000596104 RPAP2Q8IXW5 612 aaPredicted RBP12.01□□□□□ -0.49
LIG1-209ENST00000596104 MAFAQ8NHW3 353 aaPredicted RBP12.01□□□□□ -0.49
LIG1-209ENST00000596104 HAUS7Q99871 368 aa12.01□□□□□ -0.49
LIG1-209ENST00000596104 KANSL2Q9H9L4 492 aa12.01□□□□□ -0.49
LIG1-209ENST00000596104 TACC3Q9Y6A5 838 aa12.01□□□□□ -0.49
LIG1-209ENST00000596104 A0A1W2PQ45 241 aaPredicted RBP12□□□□□ -0.49
LIG1-209ENST00000596104 A0A1W2PQY0 241 aa12□□□□□ -0.49
LIG1-209ENST00000596104 RAB11FIP3O75154 756 aa12□□□□□ -0.49
LIG1-209ENST00000596104 AKR1A1P14550 325 aa12□□□□□ -0.49
LIG1-209ENST00000596104 KCTD2Q14681 263 aa12□□□□□ -0.49
LIG1-209ENST00000596104 FAM83BQ5T0W9 1011 aa12□□□□□ -0.49
LIG1-209ENST00000596104 CTR9Q6PD62 1173 aa12□□□□□ -0.49
LIG1-209ENST00000596104 MYLIPQ8WY64 445 aa12□□□□□ -0.49
LIG1-209ENST00000596104 LENG1Q96BZ8 264 aaPredicted RBP12□□□□□ -0.49
LIG1-209ENST00000596104 DDX24Q9GZR7 859 aaKnown RBP eCLIP12□□□□□ -0.496e-7■■■■□ 25.4
LIG1-209ENST00000596104 ZBTB40Q9NUA8 1239 aa12□□□□□ -0.49
LIG1-209ENST00000596104 DNAJC25-GNG10A0A024R161 153 aa11.99□□□□□ -0.49
LIG1-209ENST00000596104 TMEM265A0A087WTH1 108 aa11.99□□□□□ -0.49
LIG1-209ENST00000596104 PQBP1O60828 265 aaKnown RBP11.99□□□□□ -0.49
LIG1-209ENST00000596104 HMMRO75330 724 aa11.99□□□□□ -0.49
LIG1-209ENST00000596104 COPB2P35606 906 aa11.99□□□□□ -0.49
LIG1-209ENST00000596104 ANKRD33Q7Z3H0 272 aa11.99□□□□□ -0.49
LIG1-209ENST00000596104 AMOTL1Q8IY63 956 aa11.99□□□□□ -0.49
LIG1-209ENST00000596104 KLHDC9Q8NEP7 349 aa11.99□□□□□ -0.49
LIG1-209ENST00000596104 RNPC3Q96LT9 517 aaKnown RBP11.99□□□□□ -0.49
LIG1-209ENST00000596104 PUS7LQ9H0K6 701 aaKnown RBP11.99□□□□□ -0.49
LIG1-209ENST00000596104 GOPCQ9HD26 462 aa11.99□□□□□ -0.49
LIG1-209ENST00000596104 SLC4A4Q9Y6R1 1079 aa11.99□□□□□ -0.49
LIG1-209ENST00000596104 SNAI1O95863 264 aaPredicted RBP11.98□□□□□ -0.49
LIG1-209ENST00000596104 RAG1P15918 1043 aa11.98□□□□□ -0.49
LIG1-209ENST00000596104 ACLYP53396 1101 aa11.98□□□□□ -0.49
LIG1-209ENST00000596104 FAAP100Q0VG06 881 aa11.98□□□□□ -0.49
LIG1-209ENST00000596104 CCSAPQ6IQ19 270 aaPredicted RBP11.98□□□□□ -0.49
LIG1-209ENST00000596104 MSL3Q8N5Y2 521 aaKnown RBP11.98□□□□□ -0.49
LIG1-209ENST00000596104 DDRGK1Q96HY6 314 aa11.98□□□□□ -0.49
LIG1-209ENST00000596104 TOX2Q96NM4 488 aa11.98□□□□□ -0.49
LIG1-209ENST00000596104 NUP88Q99567 741 aaPredicted RBP11.98□□□□□ -0.49
LIG1-209ENST00000596104 TSEN34Q9BSV6 310 aaKnown RBP11.98□□□□□ -0.49
LIG1-209ENST00000596104 TEX13BQ9BXU2 312 aa11.98□□□□□ -0.49
LIG1-209ENST00000596104 BCL11AQ9H165 835 aa11.98□□□□□ -0.49
LIG1-209ENST00000596104 CNPY2Q9Y2B0 182 aa11.98□□□□□ -0.49
LIG1-209ENST00000596104 COG6Q9Y2V7 657 aa11.98□□□□□ -0.49
LIG1-209ENST00000596104 RIPK3Q9Y572 518 aa11.98□□□□□ -0.49
LIG1-209ENST00000596104 SYNGAP1Q96PV0 1343 aa11.97□□□□□ -0.49
LIG1-209ENST00000596104 SYNRGQ9UMZ2 1314 aa11.97□□□□□ -0.49
LIG1-209ENST00000596104 ATP2A1O14983 1001 aa11.97□□□□□ -0.49
LIG1-209ENST00000596104 NDUFB10O96000 172 aa11.97□□□□□ -0.49
LIG1-209ENST00000596104 MS4A1P11836 297 aa11.97□□□□□ -0.49
LIG1-209ENST00000596104 FOSL2P15408 326 aa11.97□□□□□ -0.49
LIG1-209ENST00000596104 RASA1P20936 1047 aa11.97□□□□□ -0.49
LIG1-209ENST00000596104 FPGSQ05932 587 aa11.97□□□□□ -0.49
LIG1-209ENST00000596104 SBK1Q52WX2 424 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms