RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 SH2D4AQ9H788 454 aa17.1■□□□□ 0.33
SHKBP1-211ENST00000595945 NMRK2Q9NPI5 230 aa17.1■□□□□ 0.33
SHKBP1-211ENST00000595945 PPP1R12BO60237 982 aaPredicted RBP17.09■□□□□ 0.33
SHKBP1-211ENST00000595945 PTPRAP18433 802 aa17.09■□□□□ 0.33
SHKBP1-211ENST00000595945 MAP3K9P80192 1104 aa17.09■□□□□ 0.33
SHKBP1-211ENST00000595945 KIAA1755Q5JYT7 1200 aa17.09■□□□□ 0.33
SHKBP1-211ENST00000595945 GPATCH4Q5T3I0 446 aaKnown RBP17.09■□□□□ 0.33
SHKBP1-211ENST00000595945 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.09■□□□□ 0.33
SHKBP1-211ENST00000595945 CCDC82Q8N4S0 544 aa17.09■□□□□ 0.33
SHKBP1-211ENST00000595945 TNPO1Q92973 898 aaKnown RBP17.09■□□□□ 0.33
SHKBP1-211ENST00000595945 AIFM3Q96NN9 605 aa17.09■□□□□ 0.33
SHKBP1-211ENST00000595945 ALG1Q9BT22 464 aa17.09■□□□□ 0.33
SHKBP1-211ENST00000595945 VCPKMTQ9H867 229 aa17.09■□□□□ 0.33
SHKBP1-211ENST00000595945 RBM27Q9P2N5 1060 aaKnown RBP17.09■□□□□ 0.33
SHKBP1-211ENST00000595945 CLEC11AQ9Y240 323 aa17.09■□□□□ 0.33
SHKBP1-211ENST00000595945 V9GY48 417 aaPredicted RBP17.09■□□□□ 0.33
SHKBP1-211ENST00000595945 RLFQ13129 1914 aa17.08■□□□□ 0.33
SHKBP1-211ENST00000595945 FRMPD2Q68DX3 1309 aaPredicted RBP17.08■□□□□ 0.32
SHKBP1-211ENST00000595945 F13A1P00488 732 aa17.08■□□□□ 0.32
SHKBP1-211ENST00000595945 NF2P35240 595 aa17.08■□□□□ 0.32
SHKBP1-211ENST00000595945 MAP1SQ66K74 1059 aaPredicted RBP17.08■□□□□ 0.32
SHKBP1-211ENST00000595945 CLEC17AQ6ZS10 378 aa17.08■□□□□ 0.32
SHKBP1-211ENST00000595945 FBXO18Q8NFZ0 1043 aa17.08■□□□□ 0.32
SHKBP1-211ENST00000595945 C8orf76Q96K31 380 aa17.08■□□□□ 0.32
SHKBP1-211ENST00000595945 KIAA1683Q9H0B3 1180 aa17.08■□□□□ 0.32
SHKBP1-211ENST00000595945 GOPCQ9HD26 462 aa17.08■□□□□ 0.32
SHKBP1-211ENST00000595945 SNCAIPQ9Y6H5 919 aa17.08■□□□□ 0.32
SHKBP1-211ENST00000595945 SMCHD1A6NHR9 2005 aa17.08■□□□□ 0.32
SHKBP1-211ENST00000595945 VPS37CA5D8V6 355 aaPredicted RBP17.07■□□□□ 0.32
SHKBP1-211ENST00000595945 SLC1A4P43007 532 aa17.07■□□□□ 0.32
SHKBP1-211ENST00000595945 IREB2P48200 963 aaKnown RBP17.07■□□□□ 0.32
SHKBP1-211ENST00000595945 PFKFB3Q16875 520 aaPredicted RBP17.07■□□□□ 0.32
SHKBP1-211ENST00000595945 CCDC96Q2M329 555 aa17.07■□□□□ 0.32
SHKBP1-211ENST00000595945 TTBK2Q6IQ55 1244 aa17.07■□□□□ 0.32
SHKBP1-211ENST00000595945 BTNL9Q6UXG8 535 aa17.07■□□□□ 0.32
SHKBP1-211ENST00000595945 SHISA4Q96DD7 197 aa17.07■□□□□ 0.32
SHKBP1-211ENST00000595945 MTMR8Q96EF0 704 aa17.07■□□□□ 0.32
SHKBP1-211ENST00000595945 CPVLQ9H3G5 476 aa17.07■□□□□ 0.32
SHKBP1-211ENST00000595945 GPCPD1Q9NPB8 672 aa17.07■□□□□ 0.32
SHKBP1-211ENST00000595945 hCG_1642624A0A1W2PR95 340 aa17.06■□□□□ 0.32
SHKBP1-211ENST00000595945 BMP3P12645 472 aa17.06■□□□□ 0.32
SHKBP1-211ENST00000595945 SCG2P13521 617 aa17.06■□□□□ 0.32
SHKBP1-211ENST00000595945 AKAP17AQ02040 695 aaKnown RBP17.06■□□□□ 0.32
SHKBP1-211ENST00000595945 RESTQ13127 1097 aa17.06■□□□□ 0.32
SHKBP1-211ENST00000595945 PRKG1Q13976 671 aa17.06■□□□□ 0.32
SHKBP1-211ENST00000595945 KRT40Q6A162 431 aa17.06■□□□□ 0.32
SHKBP1-211ENST00000595945 KCTD1Q719H9 257 aa17.06■□□□□ 0.32
SHKBP1-211ENST00000595945 UBA5Q9GZZ9 404 aa17.06■□□□□ 0.32
SHKBP1-211ENST00000595945 AS3MTQ9HBK9 375 aa17.06■□□□□ 0.32
SHKBP1-211ENST00000595945 PICK1Q9NRD5 415 aa17.06■□□□□ 0.32
SHKBP1-211ENST00000595945 GJB4Q9NTQ9 266 aa17.06■□□□□ 0.32
SHKBP1-211ENST00000595945 LOC285556D6RIA3 1793 aa17.06■□□□□ 0.32
SHKBP1-211ENST00000595945 H3BQV1 296 aa17.05■□□□□ 0.32
SHKBP1-211ENST00000595945 TRAF5O00463 557 aa17.05■□□□□ 0.32
SHKBP1-211ENST00000595945 PLA2G6O60733 806 aa17.05■□□□□ 0.32
SHKBP1-211ENST00000595945 FOSBP53539 338 aa17.05■□□□□ 0.32
SHKBP1-211ENST00000595945 VGLL4Q14135 290 aa17.05■□□□□ 0.32
SHKBP1-211ENST00000595945 IFFO2Q5TF58 517 aa17.05■□□□□ 0.32
SHKBP1-211ENST00000595945 FOXD4L5Q5VV16 416 aaPredicted RBP17.05■□□□□ 0.32
SHKBP1-211ENST00000595945 OTUD7BQ6GQQ9 843 aa17.05■□□□□ 0.32
SHKBP1-211ENST00000595945 FOXD4L4Q8WXT5 416 aaPredicted RBP17.05■□□□□ 0.32
SHKBP1-211ENST00000595945 NUP88Q99567 741 aaPredicted RBP17.05■□□□□ 0.32
SHKBP1-211ENST00000595945 JMJD4Q9H9V9 463 aa17.05■□□□□ 0.32
SHKBP1-211ENST00000595945 USP17L10C9JJH3 530 aa17.04■□□□□ 0.32
SHKBP1-211ENST00000595945 LDLRAD1Q5T700 205 aa17.04■□□□□ 0.32
SHKBP1-211ENST00000595945 ANKRD13AQ8IZ07 590 aa17.04■□□□□ 0.32
SHKBP1-211ENST00000595945 ADGRF4Q8IZF3 695 aa17.04■□□□□ 0.32
SHKBP1-211ENST00000595945 FAM177A1Q8N128 213 aaPredicted RBP17.04■□□□□ 0.32
SHKBP1-211ENST00000595945 ZNF280CQ8ND82 737 aa17.04■□□□□ 0.32
SHKBP1-211ENST00000595945 LPAR1Q92633 364 aa17.04■□□□□ 0.32
SHKBP1-211ENST00000595945 SH3GLB2Q9NR46 395 aa17.04■□□□□ 0.32
SHKBP1-211ENST00000595945 AFG3L2Q9Y4W6 797 aa17.04■□□□□ 0.32
SHKBP1-211ENST00000595945 UNCXA6NJT0 531 aa17.03■□□□□ 0.32
SHKBP1-211ENST00000595945 RAD21O60216 631 aa17.03■□□□□ 0.32
SHKBP1-211ENST00000595945 SLC16A2P36021 539 aa17.03■□□□□ 0.32
SHKBP1-211ENST00000595945 USP14P54578 494 aa17.03■□□□□ 0.32
SHKBP1-211ENST00000595945 BACE1P56817 501 aa17.03■□□□□ 0.32
SHKBP1-211ENST00000595945 GUCY1B3Q02153 619 aa17.03■□□□□ 0.32
SHKBP1-211ENST00000595945 FMR1Q06787 632 aaKnown RBP eCLIP17.03■□□□□ 0.32
SHKBP1-211ENST00000595945 SPP2Q13103 211 aa17.03■□□□□ 0.32
SHKBP1-211ENST00000595945 FAM83BQ5T0W9 1011 aa17.03■□□□□ 0.32
SHKBP1-211ENST00000595945 MOB2Q70IA6 237 aa17.03■□□□□ 0.32
SHKBP1-211ENST00000595945 ARMC9Q7Z3E5 817 aa17.03■□□□□ 0.32
SHKBP1-211ENST00000595945 SPICE1Q8N0Z3 855 aa17.03■□□□□ 0.32
SHKBP1-211ENST00000595945 ZNF526Q8TF50 670 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-211ENST00000595945 RRP36Q96EU6 259 aaKnown RBP17.03■□□□□ 0.32
SHKBP1-211ENST00000595945 C12orf42Q96LP6 360 aa17.03■□□□□ 0.32
SHKBP1-211ENST00000595945 PIGSQ96S52 555 aa17.03■□□□□ 0.32
SHKBP1-211ENST00000595945 FEZ1Q99689 392 aa17.03■□□□□ 0.32
SHKBP1-211ENST00000595945 PHF20Q9BVI0 1012 aa17.03■□□□□ 0.32
SHKBP1-211ENST00000595945 EMILIN3Q9NT22 766 aa17.03■□□□□ 0.32
SHKBP1-211ENST00000595945 CSADQ9Y600 493 aa17.03■□□□□ 0.32
SHKBP1-211ENST00000595945 ZHX2Q9Y6X8 837 aa17.03■□□□□ 0.32
SHKBP1-211ENST00000595945 C19orf81C9J6K1 198 aa17.02■□□□□ 0.32
SHKBP1-211ENST00000595945 TMEM232C9JQI7 657 aa17.02■□□□□ 0.32
SHKBP1-211ENST00000595945 WDR46O15213 610 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-211ENST00000595945 MMP1P03956 469 aa17.02■□□□□ 0.32
SHKBP1-211ENST00000595945 KIF23Q02241 960 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-211ENST00000595945 MTMR2Q13614 643 aa17.02■□□□□ 0.32
SHKBP1-211ENST00000595945 TRIM29Q14134 588 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms