RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 TSPY3P0CV98 308 aa17.94■□□□□ 0.46
TRIM28-205ENST00000595028 TSPY8P0CW00 308 aa17.94■□□□□ 0.46
TRIM28-205ENST00000595028 HSPD1P10809 573 aaKnown RBP17.94■□□□□ 0.46
TRIM28-205ENST00000595028 DSG3P32926 999 aa17.94■□□□□ 0.46
TRIM28-205ENST00000595028 CTDSPL2Q05D32 466 aa17.94■□□□□ 0.46
TRIM28-205ENST00000595028 TTC22Q5TAA0 569 aa17.94■□□□□ 0.46
TRIM28-205ENST00000595028 PLEKHH3Q7Z736 793 aa17.94■□□□□ 0.46
TRIM28-205ENST00000595028 MB21D1Q8N884 522 aa17.94■□□□□ 0.46
TRIM28-205ENST00000595028 NEDD1Q8NHV4 660 aa17.94■□□□□ 0.46
TRIM28-205ENST00000595028 NUDT12Q9BQG2 462 aa17.94■□□□□ 0.46
TRIM28-205ENST00000595028 HOXC10Q9NYD6 342 aa17.94■□□□□ 0.46
TRIM28-205ENST00000595028 RAD21O60216 631 aa17.93■□□□□ 0.46
TRIM28-205ENST00000595028 FGAP02671 866 aa17.93■□□□□ 0.46
TRIM28-205ENST00000595028 HMGCRP04035 888 aa17.93■□□□□ 0.46
TRIM28-205ENST00000595028 GSPT1P15170 499 aaKnown RBP17.93■□□□□ 0.46
TRIM28-205ENST00000595028 MFAP1P55081 439 aaKnown RBP17.93■□□□□ 0.46
TRIM28-205ENST00000595028 FAM47AQ5JRC9 791 aa17.93■□□□□ 0.46
TRIM28-205ENST00000595028 FAM83BQ5T0W9 1011 aa17.93■□□□□ 0.46
TRIM28-205ENST00000595028 ATG4CQ96DT6 458 aa17.93■□□□□ 0.46
TRIM28-205ENST00000595028 RNF208Q9H0X6 261 aa17.93■□□□□ 0.46
TRIM28-205ENST00000595028 CWC22Q9HCG8 908 aaKnown RBP17.93■□□□□ 0.46
TRIM28-205ENST00000595028 MTMR4Q9NYA4 1195 aa17.93■□□□□ 0.46
TRIM28-205ENST00000595028 SYNPO2Q9UMS6 1093 aa17.93■□□□□ 0.46
TRIM28-205ENST00000595028 VCANP13611 3396 aa17.93■□□□□ 0.46
TRIM28-205ENST00000595028 FARP2O94887 1054 aaPredicted RBP17.92■□□□□ 0.46
TRIM28-205ENST00000595028 TTLL1O95922 423 aa17.92■□□□□ 0.46
TRIM28-205ENST00000595028 NDUFB10O96000 172 aa17.92■□□□□ 0.46
TRIM28-205ENST00000595028 TFAP4Q01664 338 aa17.92■□□□□ 0.46
TRIM28-205ENST00000595028 MORN1Q5T089 497 aa17.92■□□□□ 0.46
TRIM28-205ENST00000595028 CWC27Q6UX04 472 aaKnown RBP17.92■□□□□ 0.46
TRIM28-205ENST00000595028 LRRC47Q8N1G4 583 aaKnown RBP17.92■□□□□ 0.46
TRIM28-205ENST00000595028 USP6NLQ92738 828 aa17.92■□□□□ 0.46
TRIM28-205ENST00000595028 UNC93B1Q9H1C4 597 aa17.92■□□□□ 0.46
TRIM28-205ENST00000595028 FBXO28Q9NVF7 368 aa17.92■□□□□ 0.46
TRIM28-205ENST00000595028 CLIP2Q9UDT6 1046 aa17.92■□□□□ 0.46
TRIM28-205ENST00000595028 TACC3Q9Y6A5 838 aa17.92■□□□□ 0.46
TRIM28-205ENST00000595028 F5H6K3 240 aa17.91■□□□□ 0.46
TRIM28-205ENST00000595028 ORC4O43929 436 aa17.91■□□□□ 0.46
TRIM28-205ENST00000595028 EVI5O60447 810 aa17.91■□□□□ 0.46
TRIM28-205ENST00000595028 FGRP09769 529 aa17.91■□□□□ 0.46
TRIM28-205ENST00000595028 CYP2B6P20813 491 aa17.91■□□□□ 0.46
TRIM28-205ENST00000595028 RGS2P41220 211 aa17.91■□□□□ 0.46
TRIM28-205ENST00000595028 KLRC3Q07444 240 aa17.91■□□□□ 0.46
TRIM28-205ENST00000595028 WDR78Q5VTH9 848 aa17.91■□□□□ 0.46
TRIM28-205ENST00000595028 TRIB2Q92519 343 aa17.91■□□□□ 0.46
TRIM28-205ENST00000595028 MKL1Q969V6 931 aa17.91■□□□□ 0.46
TRIM28-205ENST00000595028 NUP88Q99567 741 aaPredicted RBP17.91■□□□□ 0.46
TRIM28-205ENST00000595028 APBA2Q99767 749 aa17.91■□□□□ 0.46
TRIM28-205ENST00000595028 MOV10L1Q9BXT6 1211 aaKnown RBP17.91■□□□□ 0.46
TRIM28-205ENST00000595028 SPATC1LQ9H0A9 340 aa17.91■□□□□ 0.46
TRIM28-205ENST00000595028 PPP1R9AQ9ULJ8 1098 aa17.91■□□□□ 0.46
TRIM28-205ENST00000595028 TSPY2A6NKD2 308 aa17.9■□□□□ 0.46
TRIM28-205ENST00000595028 XRCC5P13010 732 aaKnown RBP17.9■□□□□ 0.46
TRIM28-205ENST00000595028 SAMD1Q6SPF0 538 aaPredicted RBP17.9■□□□□ 0.46
TRIM28-205ENST00000595028 DEFB123Q8N688 67 aa17.9■□□□□ 0.46
TRIM28-205ENST00000595028 GMCL1P1Q8NEA9 526 aa17.9■□□□□ 0.46
TRIM28-205ENST00000595028 SHCBP1Q8NEM2 672 aa17.9■□□□□ 0.46
TRIM28-205ENST00000595028 U2AF1L4Q8WU68 220 aaKnown RBP17.9■□□□□ 0.46
TRIM28-205ENST00000595028 COL25A1Q9BXS0 654 aaPredicted RBP17.9■□□□□ 0.46
TRIM28-205ENST00000595028 INCENPQ9NQS7 918 aa17.9■□□□□ 0.46
TRIM28-205ENST00000595028 ADAMTS5Q9UNA0 930 aa17.9■□□□□ 0.46
TRIM28-205ENST00000595028 IVNS1ABPQ9Y6Y0 642 aa17.9■□□□□ 0.46
TRIM28-205ENST00000595028 SLC15A5A6NIM6 579 aa17.89■□□□□ 0.45
TRIM28-205ENST00000595028 ZKSCAN1P17029 563 aaPredicted RBP17.89■□□□□ 0.45
TRIM28-205ENST00000595028 PTPREP23469 700 aa17.89■□□□□ 0.45
TRIM28-205ENST00000595028 HAND2P61296 217 aa17.89■□□□□ 0.45
TRIM28-205ENST00000595028 MAP2K5Q13163 448 aa17.89■□□□□ 0.45
TRIM28-205ENST00000595028 GRB14Q14449 540 aa17.89■□□□□ 0.45
TRIM28-205ENST00000595028 PPP4R3BQ5MIZ7 849 aa17.89■□□□□ 0.45
TRIM28-205ENST00000595028 Q7L0L9 218 aa17.89■□□□□ 0.45
TRIM28-205ENST00000595028 SLF1Q9BQI6 1058 aa17.89■□□□□ 0.45
TRIM28-205ENST00000595028 NBPF3Q9H094 633 aa17.89■□□□□ 0.45
TRIM28-205ENST00000595028 STXBP5LQ9Y2K9 1186 aa17.89■□□□□ 0.45
TRIM28-205ENST00000595028 RANBP6O60518 1105 aaKnown RBP17.88■□□□□ 0.45
TRIM28-205ENST00000595028 ERCC3P19447 782 aa17.88■□□□□ 0.45
TRIM28-205ENST00000595028 TRIM32Q13049 653 aa17.88■□□□□ 0.45
TRIM28-205ENST00000595028 PLS1Q14651 629 aa17.88■□□□□ 0.45
TRIM28-205ENST00000595028 TMEM132BQ14DG7 1078 aa17.88■□□□□ 0.45
TRIM28-205ENST00000595028 GPR153Q6NV75 609 aa17.88■□□□□ 0.45
TRIM28-205ENST00000595028 TBC1D10CQ8IV04 446 aa17.88■□□□□ 0.45
TRIM28-205ENST00000595028 TRMT44Q8IYL2 757 aaKnown RBP17.88■□□□□ 0.45
TRIM28-205ENST00000595028 PAK6Q9NQU5 681 aaPredicted RBP17.88■□□□□ 0.45
TRIM28-205ENST00000595028 IL17RBQ9NRM6 502 aa17.88■□□□□ 0.45
TRIM28-205ENST00000595028 TOMM22Q9NS69 142 aa17.88■□□□□ 0.45
TRIM28-205ENST00000595028 STX8Q9UNK0 236 aa17.88■□□□□ 0.45
TRIM28-205ENST00000595028 RAD50Q92878 1312 aa17.88■□□□□ 0.45
TRIM28-205ENST00000595028 ALPK3Q96L96 1907 aa17.88■□□□□ 0.45
TRIM28-205ENST00000595028 VWA5AO00534 786 aa17.87■□□□□ 0.45
TRIM28-205ENST00000595028 NMT2O60551 498 aa17.87■□□□□ 0.45
TRIM28-205ENST00000595028 PCP11498 1178 aaKnown RBP17.87■□□□□ 0.45
TRIM28-205ENST00000595028 MAP3K21Q5TCX8 1036 aa17.87■□□□□ 0.45
TRIM28-205ENST00000595028 REPS2Q8NFH8 660 aa17.87■□□□□ 0.45
TRIM28-205ENST00000595028 STAG1Q8WVM7 1258 aa17.87■□□□□ 0.45
TRIM28-205ENST00000595028 DSCC1Q9BVC3 393 aa17.87■□□□□ 0.45
TRIM28-205ENST00000595028 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.87■□□□□ 0.453e-14■□□□□ 9.5
TRIM28-205ENST00000595028 IL25Q9H293 177 aa17.87■□□□□ 0.45
TRIM28-205ENST00000595028 MROH8Q9H579 483 aa17.87■□□□□ 0.45
TRIM28-205ENST00000595028 FRMPD3Q5JV73 1810 aa17.86■□□□□ 0.45
TRIM28-205ENST00000595028 SPTBN5Q9NRC6 3674 aaKnown RBP17.86■□□□□ 0.45
TRIM28-205ENST00000595028 SGPL1O95470 568 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms