RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 SAMD1Q6SPF0 538 aaPredicted RBP17.18■□□□□ 0.34
VRK3-206ENST00000594090 CASC1Q6TDU7 716 aa17.18■□□□□ 0.34
VRK3-206ENST00000594090 KIAA1211Q6ZU35 1233 aa17.18■□□□□ 0.34
VRK3-206ENST00000594090 MAP4K1Q92918 833 aa17.18■□□□□ 0.34
VRK3-206ENST00000594090 COA7Q96BR5 231 aa17.18■□□□□ 0.34
VRK3-206ENST00000594090 KRT23Q9C075 422 aa17.18■□□□□ 0.34
VRK3-206ENST00000594090 LSG1Q9H089 658 aaKnown RBP17.18■□□□□ 0.34
VRK3-206ENST00000594090 PORCNQ9H237 461 aa17.18■□□□□ 0.34
VRK3-206ENST00000594090 GABRQQ9UN88 632 aa17.18■□□□□ 0.34
VRK3-206ENST00000594090 RBM8AQ9Y5S9 174 aaKnown RBP17.18■□□□□ 0.34
VRK3-206ENST00000594090 COL11A1P12107 1806 aaPredicted RBP17.18■□□□□ 0.34
VRK3-206ENST00000594090 CENPFP49454 3210 aa17.18■□□□□ 0.34
VRK3-206ENST00000594090 PLXNB2O15031 1838 aa17.17■□□□□ 0.34
VRK3-206ENST00000594090 CCDC85CA6NKD9 419 aa17.17■□□□□ 0.34
VRK3-206ENST00000594090 KDM4AO75164 1064 aa17.17■□□□□ 0.34
VRK3-206ENST00000594090 CCNA1P78396 465 aa17.17■□□□□ 0.34
VRK3-206ENST00000594090 MB21D1Q8N884 522 aa17.17■□□□□ 0.34
VRK3-206ENST00000594090 GMCL1Q96IK5 515 aa17.17■□□□□ 0.34
VRK3-206ENST00000594090 CNNM2Q9H8M5 875 aa17.17■□□□□ 0.34
VRK3-206ENST00000594090 PPP1R9AQ9ULJ8 1098 aa17.17■□□□□ 0.34
VRK3-206ENST00000594090 ADAMTS5Q9UNA0 930 aa17.17■□□□□ 0.34
VRK3-206ENST00000594090 MAPK4P31152 587 aa17.16■□□□□ 0.34
VRK3-206ENST00000594090 FLT3LGP49771 235 aa17.16■□□□□ 0.34
VRK3-206ENST00000594090 SLC9C1Q4G0N8 1177 aa17.16■□□□□ 0.34
VRK3-206ENST00000594090 RCSD1Q6JBY9 416 aa17.16■□□□□ 0.34
VRK3-206ENST00000594090 IQCA1Q86XH1 822 aa17.16■□□□□ 0.34
VRK3-206ENST00000594090 RAET1EQ8TD07 263 aa17.16■□□□□ 0.34
VRK3-206ENST00000594090 SLF1Q9BQI6 1058 aa17.16■□□□□ 0.34
VRK3-206ENST00000594090 ZKSCAN3Q9BRR0 538 aa17.16■□□□□ 0.34
VRK3-206ENST00000594090 ANO2Q9NQ90 1003 aa17.16■□□□□ 0.34
VRK3-206ENST00000594090 TOP1P11387 765 aaKnown RBP17.15■□□□□ 0.34
VRK3-206ENST00000594090 BMP3P12645 472 aa17.15■□□□□ 0.34
VRK3-206ENST00000594090 RASGRP2Q7LDG7 609 aa17.15■□□□□ 0.34
VRK3-206ENST00000594090 CCAR1Q8IX12 1150 aaKnown RBP17.15■□□□□ 0.34
VRK3-206ENST00000594090 ARMC5Q96C12 935 aa17.15■□□□□ 0.34
VRK3-206ENST00000594090 TTC14Q96N46 770 aa17.15■□□□□ 0.34
VRK3-206ENST00000594090 TMEM47Q9BQJ4 181 aa17.15■□□□□ 0.34
VRK3-206ENST00000594090 SPATC1LQ9H0A9 340 aa17.15■□□□□ 0.34
VRK3-206ENST00000594090 ZSWIM5Q9P217 1185 aa17.15■□□□□ 0.34
VRK3-206ENST00000594090 TAF6LQ9Y6J9 622 aa17.15■□□□□ 0.34
VRK3-206ENST00000594090 DOCK3Q8IZD9 2030 aa17.15■□□□□ 0.34
VRK3-206ENST00000594090 VWA5AO00534 786 aa17.14■□□□□ 0.33
VRK3-206ENST00000594090 MCCP23508 829 aa17.14■□□□□ 0.33
VRK3-206ENST00000594090 SLC1A4P43007 532 aa17.14■□□□□ 0.33
VRK3-206ENST00000594090 IRF5Q13568 498 aa17.14■□□□□ 0.33
VRK3-206ENST00000594090 TMEM132BQ14DG7 1078 aa17.14■□□□□ 0.33
VRK3-206ENST00000594090 GPR142Q7Z601 462 aa17.14■□□□□ 0.33
VRK3-206ENST00000594090 MOV10L1Q9BXT6 1211 aaKnown RBP17.14■□□□□ 0.33
VRK3-206ENST00000594090 FEM1BQ9UK73 627 aa17.14■□□□□ 0.33
VRK3-206ENST00000594090 TRDNQ13061 729 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 CCDC178Q5BJE1 867 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 PLEKHH3Q7Z736 793 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 PRPF38AQ8NAV1 312 aaKnown RBP17.13■□□□□ 0.33
VRK3-206ENST00000594090 REPS2Q8NFH8 660 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 SH3TC2Q8TF17 1288 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 SOCS4Q8WXH5 440 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 CHMP4CQ96CF2 233 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 CWC22Q9HCG8 908 aaKnown RBP17.13■□□□□ 0.33
VRK3-206ENST00000594090 GJD2Q9UKL4 321 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 ISY1Q9ULR0 285 aaKnown RBP17.13■□□□□ 0.33
VRK3-206ENST00000594090 MTMR7Q9Y216 660 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 ZNF236Q9UL36 1845 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 E7EWF7 191 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 GRK4P32298 578 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 STAT2P52630 851 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 PLS1Q14651 629 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 WDR78Q5VTH9 848 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 STOX1Q6ZVD7 989 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 KCTD1Q719H9 257 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 CYB5R4Q7L1T6 521 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 NBPF11Q86T75 865 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 DGKHQ86XP1 1220 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 ENAHQ8N8S7 591 aaPredicted RBP17.13■□□□□ 0.33
VRK3-206ENST00000594090 SLAIN1Q8ND83 568 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 SHCBP1Q8NEM2 672 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 DCAF4Q8WV16 495 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 KIFC2Q96AC6 838 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 ZNF333Q96JL9 665 aa17.13■□□□□ 0.33
VRK3-206ENST00000594090 ZSCAN10Q96SZ4 725 aaPredicted RBP17.13■□□□□ 0.33
VRK3-206ENST00000594090 ZNF214Q9UL59 606 aaPredicted RBP17.13■□□□□ 0.33
VRK3-206ENST00000594090 TNKSO95271 1327 aa17.12■□□□□ 0.33
VRK3-206ENST00000594090 TMEM232C9JQI7 657 aa17.12■□□□□ 0.33
VRK3-206ENST00000594090 PDHBP11177 359 aa17.12■□□□□ 0.33
VRK3-206ENST00000594090 NECTIN1Q15223 517 aa17.12■□□□□ 0.33
VRK3-206ENST00000594090 CCDC96Q2M329 555 aa17.12■□□□□ 0.33
VRK3-206ENST00000594090 MORN1Q5T089 497 aa17.12■□□□□ 0.33
VRK3-206ENST00000594090 RALYLQ86SE5 291 aaKnown RBP17.12■□□□□ 0.33
VRK3-206ENST00000594090 FAM160B2Q86V87 743 aa17.12■□□□□ 0.33
VRK3-206ENST00000594090 NCOA7Q8NI08 942 aa17.12■□□□□ 0.33
VRK3-206ENST00000594090 ANKS1AQ92625 1134 aa17.12■□□□□ 0.33
VRK3-206ENST00000594090 NUDT12Q9BQG2 462 aa17.12■□□□□ 0.33
VRK3-206ENST00000594090 UBAC1Q9BSL1 405 aa17.12■□□□□ 0.33
VRK3-206ENST00000594090 SLC27A2O14975 620 aa17.11■□□□□ 0.33
VRK3-206ENST00000594090 ADCY3O60266 1144 aa17.11■□□□□ 0.33
VRK3-206ENST00000594090 PLA2G6O60733 806 aa17.11■□□□□ 0.33
VRK3-206ENST00000594090 ERCC3P19447 782 aa17.11■□□□□ 0.33
VRK3-206ENST00000594090 PTPREP23469 700 aa17.11■□□□□ 0.33
VRK3-206ENST00000594090 IKQ13123 557 aaPredicted RBP17.11■□□□□ 0.33
VRK3-206ENST00000594090 CREB3L3Q68CJ9 461 aa17.11■□□□□ 0.33
VRK3-206ENST00000594090 RIOX2Q8IUF8 465 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 112.7 ms