RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 CXCL9Q07325 125 aa11.1□□□□□ -0.63
LIG3-216ENST00000593099 NECTIN1Q15223 517 aa11.1□□□□□ -0.63
LIG3-216ENST00000593099 CTR9Q6PD62 1173 aa11.1□□□□□ -0.63
LIG3-216ENST00000593099 ARHGEF35A5YM69 484 aa11.09□□□□□ -0.63
LIG3-216ENST00000593099 GAS7O60861 476 aa11.09□□□□□ -0.63
LIG3-216ENST00000593099 SV2BQ7L1I2 683 aa11.09□□□□□ -0.63
LIG3-216ENST00000593099 ZNF397Q8NF99 534 aaPredicted RBP11.09□□□□□ -0.63
LIG3-216ENST00000593099 DCAF4Q8WV16 495 aa11.09□□□□□ -0.63
LIG3-216ENST00000593099 GLG1Q92896 1179 aa11.09□□□□□ -0.63
LIG3-216ENST00000593099 TRIM47Q96LD4 638 aa11.09□□□□□ -0.63
LIG3-216ENST00000593099 hCG_1984214I3L0E3 225 aa11.09□□□□□ -0.63
LIG3-216ENST00000593099 PSMA7O14818 248 aa11.09□□□□□ -0.63
LIG3-216ENST00000593099 DESP17661 470 aa11.09□□□□□ -0.63
LIG3-216ENST00000593099 ZNF713Q8N859 430 aaPredicted RBP11.09□□□□□ -0.63
LIG3-216ENST00000593099 PLIN2Q99541 437 aa11.09□□□□□ -0.63
LIG3-216ENST00000593099 ADARB2Q9NS39 739 aaKnown RBP11.09□□□□□ -0.63
LIG3-216ENST00000593099 VEGFAP15692 232 aaPredicted RBP11.09□□□□□ -0.63
LIG3-216ENST00000593099 APBB1IPQ7Z5R6 666 aaPredicted RBP11.09□□□□□ -0.63
LIG3-216ENST00000593099 BCL2L12Q9HB09 334 aa11.09□□□□□ -0.63
LIG3-216ENST00000593099 ABCC6O95255 1503 aa11.09□□□□□ -0.63
LIG3-216ENST00000593099 KLRK1P26718 216 aa11.09□□□□□ -0.63
LIG3-216ENST00000593099 ZNF592Q92610 1267 aa11.09□□□□□ -0.63
LIG3-216ENST00000593099 CASP7P55210 303 aa11.08□□□□□ -0.64
LIG3-216ENST00000593099 C12orf60Q5U649 245 aa11.08□□□□□ -0.64
LIG3-216ENST00000593099 FASTKD5Q7L8L6 764 aaKnown RBP11.08□□□□□ -0.64
LIG3-216ENST00000593099 CACNA2D4Q7Z3S7 1137 aa11.08□□□□□ -0.64
LIG3-216ENST00000593099 CCDC65Q8IXS2 484 aa11.08□□□□□ -0.64
LIG3-216ENST00000593099 SNX29Q8TEQ0 813 aa11.08□□□□□ -0.64
LIG3-216ENST00000593099 DACT1Q9NYF0 836 aa11.08□□□□□ -0.64
LIG3-216ENST00000593099 NEMFO60524 1076 aa11.08□□□□□ -0.64
LIG3-216ENST00000593099 CAVIN2O95810 425 aa11.08□□□□□ -0.64
LIG3-216ENST00000593099 KRT13P13646 458 aa11.08□□□□□ -0.64
LIG3-216ENST00000593099 ISM2Q6H9L7 571 aa11.08□□□□□ -0.64
LIG3-216ENST00000593099 PIGSQ96S52 555 aa11.08□□□□□ -0.64
LIG3-216ENST00000593099 DEFB129Q9H1M3 183 aa11.08□□□□□ -0.64
LIG3-216ENST00000593099 NEK8Q86SG6 692 aa11.08□□□□□ -0.64
LIG3-216ENST00000593099 SPC24Q8NBT2 197 aa11.08□□□□□ -0.64
LIG3-216ENST00000593099 MTA3Q9BTC8 594 aa11.08□□□□□ -0.64
LIG3-216ENST00000593099 GPR75-ASB3A0A0A6YYF3 556 aa11.08□□□□□ -0.64
LIG3-216ENST00000593099 FMNL1O95466 1100 aaPredicted RBP11.08□□□□□ -0.64
LIG3-216ENST00000593099 MAP3K9P80192 1104 aa11.08□□□□□ -0.64
LIG3-216ENST00000593099 PRR16Q569H4 304 aa11.08□□□□□ -0.64
LIG3-216ENST00000593099 PLA2G4DQ86XP0 818 aa11.08□□□□□ -0.64
LIG3-216ENST00000593099 NEDD1Q8NHV4 660 aa11.08□□□□□ -0.64
LIG3-216ENST00000593099 FERMT2Q96AC1 680 aa11.08□□□□□ -0.64
LIG3-216ENST00000593099 IFT74Q96LB3 600 aa11.08□□□□□ -0.64
LIG3-216ENST00000593099 FLT1P17948 1338 aa11.07□□□□□ -0.64
LIG3-216ENST00000593099 EEF2P13639 858 aaKnown RBP11.07□□□□□ -0.64
LIG3-216ENST00000593099 EPHX2P34913 555 aa11.07□□□□□ -0.64
LIG3-216ENST00000593099 DNM2P50570 870 aa11.07□□□□□ -0.64
LIG3-216ENST00000593099 SMTNP53814 917 aa11.07□□□□□ -0.64
LIG3-216ENST00000593099 TBC1D10CQ8IV04 446 aa11.07□□□□□ -0.64
LIG3-216ENST00000593099 SLF1Q9BQI6 1058 aa11.07□□□□□ -0.64
LIG3-216ENST00000593099 TMEM47Q9BQJ4 181 aa11.07□□□□□ -0.64
LIG3-216ENST00000593099 FBXO40Q9UH90 709 aa11.07□□□□□ -0.64
LIG3-216ENST00000593099 ZNF609O15014 1411 aa11.07□□□□□ -0.64
LIG3-216ENST00000593099 CUTAO60888 179 aa11.07□□□□□ -0.64
LIG3-216ENST00000593099 MIER3Q7Z3K6 550 aa11.07□□□□□ -0.64
LIG3-216ENST00000593099 NOSTRINQ8IVI9 506 aa11.07□□□□□ -0.64
LIG3-216ENST00000593099 CEP95Q96GE4 821 aa11.07□□□□□ -0.64
LIG3-216ENST00000593099 PAIP2Q9BPZ3 127 aaKnown RBP11.07□□□□□ -0.64
LIG3-216ENST00000593099 DNM3Q9UQ16 869 aa11.07□□□□□ -0.64
LIG3-216ENST00000593099 AHDC1Q5TGY3 1603 aaPredicted RBP11.07□□□□□ -0.64
LIG3-216ENST00000593099 SPDYE4A6NLX3 237 aa11.07□□□□□ -0.64
LIG3-216ENST00000593099 ORC4O43929 436 aa11.07□□□□□ -0.64
LIG3-216ENST00000593099 IFNAR1P17181 557 aa11.07□□□□□ -0.64
LIG3-216ENST00000593099 CDC37Q16543 378 aaPredicted RBP11.07□□□□□ -0.64
LIG3-216ENST00000593099 INF2Q27J81 1249 aa11.07□□□□□ -0.64
LIG3-216ENST00000593099 TEX35Q5T0J7 233 aa11.07□□□□□ -0.64
LIG3-216ENST00000593099 FILIP1Q7Z7B0 1213 aa11.07□□□□□ -0.64
LIG3-216ENST00000593099 PAF1Q8N7H5 531 aa11.07□□□□□ -0.64
LIG3-216ENST00000593099 RBM46Q8TBY0 533 aaKnown RBP11.07□□□□□ -0.64
LIG3-216ENST00000593099 AKT1S1Q96B36 256 aa11.07□□□□□ -0.64
LIG3-216ENST00000593099 FEM1BQ9UK73 627 aa11.07□□□□□ -0.64
LIG3-216ENST00000593099 CCP110O43303 1012 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 GPS2Q13227 327 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 FAM83BQ5T0W9 1011 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 UPF1Q92900 1129 aaKnown RBP eCLIP11.06□□□□□ -0.64
LIG3-216ENST00000593099 ELP3Q9H9T3 547 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 GINS2Q9Y248 185 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 PHACTR2O75167 634 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 FGFR2P21802 821 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 SCRN1Q12765 414 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 FAM47CQ5HY64 1035 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 F5H6K3 240 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 DTNBO60941 627 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 FDX1P10109 184 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 ZNF165P49910 485 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 HUNKP57058 714 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 PPP4CP60510 307 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 KLRC3Q07444 240 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 KLHL40Q2TBA0 621 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 SBK1Q52WX2 424 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 RCSD1Q6JBY9 416 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 VPS36Q86VN1 386 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 TXNRD3Q86VQ6 643 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 ELP1O95163 1332 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 PNMA6FA0A0J9YX94 578 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 M0QZ92 97 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 AKR1B1P15121 316 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms