RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 ZSWIM8A7E2V4 1837 aa13.03□□□□□ -0.32
LIG3-214ENST00000592244 CENPFP49454 3210 aa13.03□□□□□ -0.32
LIG3-214ENST00000592244 HOXC6P09630 235 aa13.02□□□□□ -0.33
LIG3-214ENST00000592244 PCP11498 1178 aaKnown RBP13.02□□□□□ -0.33
LIG3-214ENST00000592244 FCER1AP12319 257 aa13.02□□□□□ -0.33
LIG3-214ENST00000592244 ERCC3P19447 782 aa13.02□□□□□ -0.33
LIG3-214ENST00000592244 NT5C2P49902 561 aa13.02□□□□□ -0.33
LIG3-214ENST00000592244 KIAA1755Q5JYT7 1200 aa13.02□□□□□ -0.33
LIG3-214ENST00000592244 FAM83BQ5T0W9 1011 aa13.02□□□□□ -0.33
LIG3-214ENST00000592244 CCDC129Q6ZRS4 1044 aa13.02□□□□□ -0.33
LIG3-214ENST00000592244 PRPF38AQ8NAV1 312 aaKnown RBP13.02□□□□□ -0.33
LIG3-214ENST00000592244 GMCL1P1Q8NEA9 526 aa13.02□□□□□ -0.33
LIG3-214ENST00000592244 TRIB2Q92519 343 aa13.02□□□□□ -0.33
LIG3-214ENST00000592244 DPF3Q92784 378 aa13.02□□□□□ -0.33
LIG3-214ENST00000592244 MKL1Q969V6 931 aa13.02□□□□□ -0.33
LIG3-214ENST00000592244 CEP95Q96GE4 821 aa13.02□□□□□ -0.33
LIG3-214ENST00000592244 SLF1Q9BQI6 1058 aa13.02□□□□□ -0.33
LIG3-214ENST00000592244 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.02□□□□□ -0.33
LIG3-214ENST00000592244 TOMM22Q9NS69 142 aa13.02□□□□□ -0.33
LIG3-214ENST00000592244 ANAPC4Q9UJX5 808 aa13.02□□□□□ -0.33
LIG3-214ENST00000592244 FEM1BQ9UK73 627 aa13.02□□□□□ -0.33
LIG3-214ENST00000592244 ISY1Q9ULR0 285 aaKnown RBP13.02□□□□□ -0.33
LIG3-214ENST00000592244 RBBP6Q7Z6E9 1792 aaKnown RBP13.02□□□□□ -0.33
LIG3-214ENST00000592244 IGKV6D-41A0A0C4DH26 115 aa13.01□□□□□ -0.33
LIG3-214ENST00000592244 VWA5AO00534 786 aa13.01□□□□□ -0.33
LIG3-214ENST00000592244 RANBP6O60518 1105 aaKnown RBP13.01□□□□□ -0.33
LIG3-214ENST00000592244 MSCO60682 206 aa13.01□□□□□ -0.33
LIG3-214ENST00000592244 ZBED4O75132 1171 aa13.01□□□□□ -0.33
LIG3-214ENST00000592244 NDUFB10O96000 172 aa13.01□□□□□ -0.33
LIG3-214ENST00000592244 FDX1P10109 184 aa13.01□□□□□ -0.33
LIG3-214ENST00000592244 SDSP20132 328 aa13.01□□□□□ -0.33
LIG3-214ENST00000592244 STAT3P40763 770 aa13.01□□□□□ -0.33
LIG3-214ENST00000592244 NMIQ13287 307 aaPredicted RBP13.01□□□□□ -0.33
LIG3-214ENST00000592244 POTEEQ6S8J3 1075 aa13.01□□□□□ -0.33
LIG3-214ENST00000592244 NECAB2Q7Z6G3 386 aa13.01□□□□□ -0.33
LIG3-214ENST00000592244 SHISA4Q96DD7 197 aa13.01□□□□□ -0.33
LIG3-214ENST00000592244 FAM227BQ96M60 508 aa13.01□□□□□ -0.33
LIG3-214ENST00000592244 CRISPLD2Q9H0B8 497 aa13.01□□□□□ -0.33
LIG3-214ENST00000592244 RNF41Q9H4P4 317 aaPredicted RBP13.01□□□□□ -0.33
LIG3-214ENST00000592244 NR2E3Q9Y5X4 410 aa13.01□□□□□ -0.33
LIG3-214ENST00000592244 ZMYM6O95789 1325 aa13.01□□□□□ -0.33
LIG3-214ENST00000592244 CCDC171Q6TFL3 1326 aa13.01□□□□□ -0.33
LIG3-214ENST00000592244 PLIN4Q96Q06 1357 aa13.01□□□□□ -0.33
LIG3-214ENST00000592244 MGAMO43451 1857 aa13.01□□□□□ -0.33
LIG3-214ENST00000592244 BAZ2AQ9UIF9 1905 aaKnown RBP13.01□□□□□ -0.33
LIG3-214ENST00000592244 A0A0D9SFI3 127 aa13□□□□□ -0.33
LIG3-214ENST00000592244 ORC4O43929 436 aa13□□□□□ -0.33
LIG3-214ENST00000592244 FGAP02671 866 aa13□□□□□ -0.33
LIG3-214ENST00000592244 HSPD1P10809 573 aaKnown RBP13□□□□□ -0.33
LIG3-214ENST00000592244 ADORA2AP29274 412 aa13□□□□□ -0.33
LIG3-214ENST00000592244 IKQ13123 557 aaPredicted RBP13□□□□□ -0.33
LIG3-214ENST00000592244 KCTD2Q14681 263 aa13□□□□□ -0.33
LIG3-214ENST00000592244 FAM47AQ5JRC9 791 aa13□□□□□ -0.33
LIG3-214ENST00000592244 MAP3K21Q5TCX8 1036 aa13□□□□□ -0.33
LIG3-214ENST00000592244 SLFN13Q68D06 897 aa13□□□□□ -0.33
LIG3-214ENST00000592244 RIOX2Q8IUF8 465 aa13□□□□□ -0.33
LIG3-214ENST00000592244 CHURC1Q8WUH1 139 aa13□□□□□ -0.33
LIG3-214ENST00000592244 TEX13BQ9BXU2 312 aa13□□□□□ -0.33
LIG3-214ENST00000592244 ADAMTS5Q9UNA0 930 aa13□□□□□ -0.33
LIG3-214ENST00000592244 STX8Q9UNK0 236 aa13□□□□□ -0.33
LIG3-214ENST00000592244 TNRC18O15417 2968 aaPredicted RBP12.99□□□□□ -0.33
LIG3-214ENST00000592244 BMP3P12645 472 aa12.99□□□□□ -0.33
LIG3-214ENST00000592244 SLC1A4P43007 532 aa12.99□□□□□ -0.33
LIG3-214ENST00000592244 CTDSPL2Q05D32 466 aa12.99□□□□□ -0.33
LIG3-214ENST00000592244 CACNB2Q08289 660 aaPredicted RBP12.99□□□□□ -0.33
LIG3-214ENST00000592244 TMEM132BQ14DG7 1078 aa12.99□□□□□ -0.33
LIG3-214ENST00000592244 VPS53Q5VIR6 699 aa12.99□□□□□ -0.33
LIG3-214ENST00000592244 OLFML2BQ68BL8 750 aa12.99□□□□□ -0.33
LIG3-214ENST00000592244 FAM160B2Q86V87 743 aa12.99□□□□□ -0.33
LIG3-214ENST00000592244 MMP19Q99542 508 aa12.99□□□□□ -0.33
LIG3-214ENST00000592244 NBPF3Q9H094 633 aa12.99□□□□□ -0.33
LIG3-214ENST00000592244 FBXO28Q9NVF7 368 aa12.99□□□□□ -0.33
LIG3-214ENST00000592244 CTNNA3Q9UI47 895 aa12.99□□□□□ -0.33
LIG3-214ENST00000592244 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.99□□□□□ -0.33
LIG3-214ENST00000592244 ZNF213O14771 459 aa12.98□□□□□ -0.33
LIG3-214ENST00000592244 CNGA1P29973 690 aa12.98□□□□□ -0.33
LIG3-214ENST00000592244 STAT2P52630 851 aa12.98□□□□□ -0.33
LIG3-214ENST00000592244 OAZ1P54368 228 aa12.98□□□□□ -0.33
LIG3-214ENST00000592244 TRIM32Q13049 653 aa12.98□□□□□ -0.33
LIG3-214ENST00000592244 CCL14Q16627 93 aa12.98□□□□□ -0.33
LIG3-214ENST00000592244 RRP12Q5JTH9 1297 aaKnown RBP12.98□□□□□ -0.33
LIG3-214ENST00000592244 CWC27Q6UX04 472 aaKnown RBP12.98□□□□□ -0.33
LIG3-214ENST00000592244 MFSD6Q6ZSS7 791 aa12.98□□□□□ -0.33
LIG3-214ENST00000592244 UBE2Q1Q7Z7E8 422 aa12.98□□□□□ -0.33
LIG3-214ENST00000592244 LRRC47Q8N1G4 583 aaKnown RBP12.98□□□□□ -0.33
LIG3-214ENST00000592244 RUFY2Q8WXA3 655 aa12.98□□□□□ -0.33
LIG3-214ENST00000592244 KIFC2Q96AC6 838 aa12.98□□□□□ -0.33
LIG3-214ENST00000592244 GMCL1Q96IK5 515 aa12.98□□□□□ -0.33
LIG3-214ENST00000592244 NUP88Q99567 741 aaPredicted RBP12.98□□□□□ -0.33
LIG3-214ENST00000592244 FBXO40Q9UH90 709 aa12.98□□□□□ -0.33
LIG3-214ENST00000592244 OGDHLQ9ULD0 1010 aa12.98□□□□□ -0.33
LIG3-214ENST00000592244 ATP2A1O14983 1001 aa12.97□□□□□ -0.33
LIG3-214ENST00000592244 EVI5O60447 810 aa12.97□□□□□ -0.33
LIG3-214ENST00000592244 CCDC178Q5BJE1 867 aa12.97□□□□□ -0.33
LIG3-214ENST00000592244 SNRNP48Q6IEG0 339 aaKnown RBP12.97□□□□□ -0.33
LIG3-214ENST00000592244 ZNF589Q86UQ0 364 aaPredicted RBP12.97□□□□□ -0.33
LIG3-214ENST00000592244 ESR2Q92731 530 aa12.97□□□□□ -0.33
LIG3-214ENST00000592244 DDX11Q96FC9 970 aa12.97□□□□□ -0.33
LIG3-214ENST00000592244 ZNF214Q9UL59 606 aaPredicted RBP12.97□□□□□ -0.33
LIG3-214ENST00000592244 DIS3Q9Y2L1 958 aaKnown RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms