RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	DOCK3	Q8IZD9	2030 aa		10.88	□□□□□ -0.67
DNMT1-223	ENST00000591239	MB21D1	Q8N884	522 aa		10.88	□□□□□ -0.67
DNMT1-223	ENST00000591239	STAG1	Q8WVM7	1258 aa		10.88	□□□□□ -0.67
DNMT1-223	ENST00000591239	NUP88	Q99567	741 aa	Predicted RBP	10.88	□□□□□ -0.67
DNMT1-223	ENST00000591239	FBXO28	Q9NVF7	368 aa		10.88	□□□□□ -0.67
DNMT1-223	ENST00000591239	CTNNA3	Q9UI47	895 aa		10.88	□□□□□ -0.67
DNMT1-223	ENST00000591239	GJD2	Q9UKL4	321 aa		10.88	□□□□□ -0.67
DNMT1-223	ENST00000591239	RAD50	Q92878	1312 aa		10.87	□□□□□ -0.67
DNMT1-223	ENST00000591239	CENPB	P07199	599 aa	Predicted RBP	10.87	□□□□□ -0.67
DNMT1-223	ENST00000591239	IMMT	Q16891	758 aa	Known RBP	10.87	□□□□□ -0.67
DNMT1-223	ENST00000591239	GPR142	Q7Z601	462 aa		10.87	□□□□□ -0.67
DNMT1-223	ENST00000591239	TBC1D10C	Q8IV04	446 aa		10.87	□□□□□ -0.67
DNMT1-223	ENST00000591239	LRRC47	Q8N1G4	583 aa	Known RBP	10.87	□□□□□ -0.67
DNMT1-223	ENST00000591239	SLAIN1	Q8ND83	568 aa		10.87	□□□□□ -0.67
DNMT1-223	ENST00000591239	GMCL1P1	Q8NEA9	526 aa		10.87	□□□□□ -0.67
DNMT1-223	ENST00000591239	ATG4C	Q96DT6	458 aa		10.87	□□□□□ -0.67
DNMT1-223	ENST00000591239	SPATC1L	Q9H0A9	340 aa		10.87	□□□□□ -0.67
DNMT1-223	ENST00000591239	RNF39	Q9H2S5	420 aa		10.87	□□□□□ -0.67
DNMT1-223	ENST00000591239	RNF41	Q9H4P4	317 aa	Predicted RBP	10.87	□□□□□ -0.67
DNMT1-223	ENST00000591239	BIN2	Q9UBW5	565 aa	Predicted RBP	10.87	□□□□□ -0.67
DNMT1-223	ENST00000591239	STX8	Q9UNK0	236 aa		10.87	□□□□□ -0.67
DNMT1-223	ENST00000591239	RLF	Q13129	1914 aa		10.87	□□□□□ -0.67
DNMT1-223	ENST00000591239	MYH4	Q9Y623	1939 aa		10.87	□□□□□ -0.67
DNMT1-223	ENST00000591239	POTEF	A5A3E0	1075 aa		10.86	□□□□□ -0.67
DNMT1-223	ENST00000591239	SGSM2	O43147	1006 aa		10.86	□□□□□ -0.67
DNMT1-223	ENST00000591239	MYC	P01106	439 aa	Predicted RBP	10.86	□□□□□ -0.67
DNMT1-223	ENST00000591239	ELN	P15502	786 aa		10.86	□□□□□ -0.67
DNMT1-223	ENST00000591239	NOV	P48745	357 aa		10.86	□□□□□ -0.67
DNMT1-223	ENST00000591239	PLS1	Q14651	629 aa		10.86	□□□□□ -0.67
DNMT1-223	ENST00000591239	WDR78	Q5VTH9	848 aa		10.86	□□□□□ -0.67
DNMT1-223	ENST00000591239	PLEKHH3	Q7Z736	793 aa		10.86	□□□□□ -0.67
DNMT1-223	ENST00000591239	PXYLP1	Q8TE99	480 aa		10.86	□□□□□ -0.67
DNMT1-223	ENST00000591239	SOCS4	Q8WXH5	440 aa		10.86	□□□□□ -0.67
DNMT1-223	ENST00000591239	NUDT12	Q9BQG2	462 aa		10.86	□□□□□ -0.67
DNMT1-223	ENST00000591239	MOV10L1	Q9BXT6	1211 aa	Known RBP	10.86	□□□□□ -0.67
DNMT1-223	ENST00000591239	CWC22	Q9HCG8	908 aa	Known RBP	10.86	□□□□□ -0.67
DNMT1-223	ENST00000591239	TCP11L1	Q9NUJ3	509 aa		10.86	□□□□□ -0.67
DNMT1-223	ENST00000591239	PPP1R9A	Q9ULJ8	1098 aa		10.86	□□□□□ -0.67
DNMT1-223	ENST00000591239	ADAMTS5	Q9UNA0	930 aa		10.86	□□□□□ -0.67
DNMT1-223	ENST00000591239	NEDD4	P46934	1319 aa		10.85	□□□□□ -0.67
DNMT1-223	ENST00000591239	VWA5A	O00534	786 aa		10.85	□□□□□ -0.67
DNMT1-223	ENST00000591239	UBXN2A	P68543	259 aa		10.85	□□□□□ -0.67
DNMT1-223	ENST00000591239	PTH1R	Q03431	593 aa		10.85	□□□□□ -0.67
DNMT1-223	ENST00000591239	TMEM132B	Q14DG7	1078 aa		10.85	□□□□□ -0.67
DNMT1-223	ENST00000591239	MTFR1	Q15390	333 aa		10.85	□□□□□ -0.67
DNMT1-223	ENST00000591239	BMP2KL	Q5H9B9	411 aa		10.85	□□□□□ -0.67
DNMT1-223	ENST00000591239	MORN1	Q5T089	497 aa		10.85	□□□□□ -0.67
DNMT1-223	ENST00000591239	SLFN13	Q68D06	897 aa		10.85	□□□□□ -0.67
DNMT1-223	ENST00000591239	PRPF38A	Q8NAV1	312 aa	Known RBP	10.85	□□□□□ -0.67
DNMT1-223	ENST00000591239	NKX2-3	Q8TAU0	364 aa		10.85	□□□□□ -0.67
DNMT1-223	ENST00000591239	ESR2	Q92731	530 aa		10.85	□□□□□ -0.67
DNMT1-223	ENST00000591239	USP6NL	Q92738	828 aa		10.85	□□□□□ -0.67
DNMT1-223	ENST00000591239	GMCL1	Q96IK5	515 aa		10.85	□□□□□ -0.67
DNMT1-223	ENST00000591239	SLF1	Q9BQI6	1058 aa		10.85	□□□□□ -0.67
DNMT1-223	ENST00000591239	TMEM106C	Q9BVX2	250 aa		10.85	□□□□□ -0.67
DNMT1-223	ENST00000591239	FEM1B	Q9UK73	627 aa		10.85	□□□□□ -0.67
DNMT1-223	ENST00000591239		A0A0G2JMZ2	1700 aa		10.84	□□□□□ -0.67
DNMT1-223	ENST00000591239	PARP14	Q460N5	1801 aa		10.84	□□□□□ -0.67
DNMT1-223	ENST00000591239	KIAA0100	Q14667	2235 aa	Known RBP	10.84	□□□□□ -0.67
DNMT1-223	ENST00000591239	SLC15A5	A6NIM6	579 aa		10.84	□□□□□ -0.67
DNMT1-223	ENST00000591239	BMP3	P12645	472 aa		10.84	□□□□□ -0.67
DNMT1-223	ENST00000591239	XRCC5	P13010	732 aa	Known RBP	10.84	□□□□□ -0.67
DNMT1-223	ENST00000591239	CCL5	P13501	91 aa		10.84	□□□□□ -0.67
DNMT1-223	ENST00000591239	ERCC3	P19447	782 aa		10.84	□□□□□ -0.67
DNMT1-223	ENST00000591239	CYP2B6	P20813	491 aa		10.84	□□□□□ -0.67
DNMT1-223	ENST00000591239	PTPRE	P23469	700 aa		10.84	□□□□□ -0.67
DNMT1-223	ENST00000591239	MCC	P23508	829 aa		10.84	□□□□□ -0.67
DNMT1-223	ENST00000591239	SLC1A4	P43007	532 aa		10.84	□□□□□ -0.67
DNMT1-223	ENST00000591239	NT5C2	P49902	561 aa		10.84	□□□□□ -0.67
DNMT1-223	ENST00000591239	MLLT1	Q03111	559 aa	Predicted RBP	10.84	□□□□□ -0.67
DNMT1-223	ENST00000591239	SHCBP1	Q8NEM2	672 aa		10.84	□□□□□ -0.67
DNMT1-223	ENST00000591239	KIFC2	Q96AC6	838 aa		10.84	□□□□□ -0.67
DNMT1-223	ENST00000591239	CHMP4C	Q96CF2	233 aa		10.84	□□□□□ -0.67
DNMT1-223	ENST00000591239	TTC14	Q96N46	770 aa		10.84	□□□□□ -0.67
DNMT1-223	ENST00000591239	IVNS1ABP	Q9Y6Y0	642 aa		10.84	□□□□□ -0.67
DNMT1-223	ENST00000591239	PLXNB2	O15031	1838 aa		10.84	□□□□□ -0.67
DNMT1-223	ENST00000591239	LAMA4	Q16363	1823 aa		10.84	□□□□□ -0.67
DNMT1-223	ENST00000591239		B4E1Z4	1266 aa		10.83	□□□□□ -0.68
DNMT1-223	ENST00000591239	TMEM232	C9JQI7	657 aa		10.83	□□□□□ -0.68
DNMT1-223	ENST00000591239	STRN	O43815	780 aa		10.83	□□□□□ -0.68
DNMT1-223	ENST00000591239	KDM4A	O75164	1064 aa		10.83	□□□□□ -0.68
DNMT1-223	ENST00000591239	SLC25A27	O95847	323 aa		10.83	□□□□□ -0.68
DNMT1-223	ENST00000591239	HMGCR	P04035	888 aa		10.83	□□□□□ -0.68
DNMT1-223	ENST00000591239	INHA	P05111	366 aa		10.83	□□□□□ -0.68
DNMT1-223	ENST00000591239	TOP1	P11387	765 aa	Known RBP	10.83	□□□□□ -0.68
DNMT1-223	ENST00000591239	EN2	P19622	333 aa	Predicted RBP	10.83	□□□□□ -0.68
DNMT1-223	ENST00000591239	RGS2	P41220	211 aa		10.83	□□□□□ -0.68
DNMT1-223	ENST00000591239	STAT2	P52630	851 aa		10.83	□□□□□ -0.68
DNMT1-223	ENST00000591239	MAP2K5	Q13163	448 aa		10.83	□□□□□ -0.68
DNMT1-223	ENST00000591239	GRB14	Q14449	540 aa		10.83	□□□□□ -0.68
DNMT1-223	ENST00000591239	RCSD1	Q6JBY9	416 aa		10.83	□□□□□ -0.68
DNMT1-223	ENST00000591239	NCAPG2	Q86XI2	1143 aa		10.83	□□□□□ -0.68
DNMT1-223	ENST00000591239	REPS2	Q8NFH8	660 aa		10.83	□□□□□ -0.68
DNMT1-223	ENST00000591239	TMEM47	Q9BQJ4	181 aa		10.83	□□□□□ -0.68
DNMT1-223	ENST00000591239	ZKSCAN3	Q9BRR0	538 aa		10.83	□□□□□ -0.68
DNMT1-223	ENST00000591239	RNF208	Q9H0X6	261 aa		10.83	□□□□□ -0.68
DNMT1-223	ENST00000591239	MROH8	Q9H579	483 aa		10.83	□□□□□ -0.68
DNMT1-223	ENST00000591239	CNNM2	Q9H8M5	875 aa		10.83	□□□□□ -0.68
DNMT1-223	ENST00000591239	ZSWIM5	Q9P217	1185 aa		10.83	□□□□□ -0.68
DNMT1-223	ENST00000591239	ZNF214	Q9UL59	606 aa	Predicted RBP	10.83	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms