RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 CD209Q9NNX6 404 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 SLC45A1Q9Y2W3 748 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 KNSTRNQ9Y448 316 aa5.06□□□□□ -1.6
LIG3-211ENST00000588713 RLFQ13129 1914 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 KMT2EQ8IZD2 1858 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 KIF16BQ96L93 1317 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 FAM186AA6NE01 2351 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 ZBBXA8MT70 800 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 TRAK2O60296 914 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 IGHDP01880 384 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 CT47B1P0C2W7 299 aaPredicted RBP5.05□□□□□ -1.6
LIG3-211ENST00000588713 EIF2S2P20042 333 aaKnown RBP5.05□□□□□ -1.6
LIG3-211ENST00000588713 DDIT3P35638 169 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 KCNJ4P48050 445 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 FAAP100Q0VG06 881 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 RSPO4Q2I0M5 234 aaPredicted RBP5.05□□□□□ -1.6
LIG3-211ENST00000588713 CCDC152Q4G0S7 254 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 C1orf53Q5VUE5 145 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 MCTP2Q6DN12 878 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 MFSD5Q6N075 450 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 MTERF4Q7Z6M4 381 aaKnown RBP5.05□□□□□ -1.6
LIG3-211ENST00000588713 RNF135Q8IUD6 432 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 ADHFE1Q8IWW8 467 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 TMEM199Q8N511 208 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 SNX21Q969T3 373 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 HOOK2Q96ED9 719 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 PANK2Q9BZ23 570 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 PPP1R12CQ9BZL4 782 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.05□□□□□ -1.6
LIG3-211ENST00000588713 TMOD2Q9NZR1 351 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 TTF2Q9UNY4 1162 aaKnown RBP5.05□□□□□ -1.6
LIG3-211ENST00000588713 AGTPBP1Q9UPW5 1226 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 PCDHA11Q9Y5I1 949 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 GBF1Q92538 1859 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 DMXL1Q9Y485 3027 aa5.05□□□□□ -1.6
LIG3-211ENST00000588713 UTYO14607 1347 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 TECTAO75443 2155 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.04□□□□□ -1.6
LIG3-211ENST00000588713 DCDC2CA8MYV0 355 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 U2SURPO15042 1029 aaKnown RBP5.04□□□□□ -1.6
LIG3-211ENST00000588713 DIAPH1O60610 1272 aaKnown RBP5.04□□□□□ -1.6
LIG3-211ENST00000588713 FGBP02675 491 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 CYP2C19P33261 490 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 GGCXP38435 758 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 GCLCP48506 637 aaPredicted RBP5.04□□□□□ -1.6
LIG3-211ENST00000588713 COPS2P61201 443 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 MAP2K5Q13163 448 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 NBPF20Q3BBV1 942 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 PUS10Q3MIT2 529 aaKnown RBP5.04□□□□□ -1.6
LIG3-211ENST00000588713 HS1BP3Q53T59 392 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 TMEM67Q5HYA8 995 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 SMC5Q8IY18 1101 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 XAGE3Q8WTP9 111 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 GDPD5Q8WTR4 605 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 PPP1R9BQ96SB3 815 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 RWDD1Q9H446 243 aaPredicted RBP5.04□□□□□ -1.6
LIG3-211ENST00000588713 PICK1Q9NRD5 415 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 DLL3Q9NYJ7 618 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 FLRT1Q9NZU1 646 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.04□□□□□ -1.6
LIG3-211ENST00000588713 MINPP1Q9UNW1 487 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 SLC4A7Q9Y6M7 1214 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 NDUFB9Q9Y6M9 179 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 V9GY48 417 aaPredicted RBP5.04□□□□□ -1.6
LIG3-211ENST00000588713 ZNF292O60281 2723 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 TRANK1O15050 2925 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 RIF1Q5UIP0 2472 aaKnown RBP5.04□□□□□ -1.6
LIG3-211ENST00000588713 PLXNB2O15031 1838 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 FAM208BQ5VWN6 2430 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 USP24Q9UPU5 2620 aa5.04□□□□□ -1.6
LIG3-211ENST00000588713 NRG2O14511 850 aaPredicted RBP5.03□□□□□ -1.6
LIG3-211ENST00000588713 LPXNO60711 386 aa5.03□□□□□ -1.6
LIG3-211ENST00000588713 ARHGEF15O94989 841 aa5.03□□□□□ -1.6
LIG3-211ENST00000588713 ATP2A2P16615 1042 aaKnown RBP5.03□□□□□ -1.6
LIG3-211ENST00000588713 CRKP46108 304 aa5.03□□□□□ -1.6
LIG3-211ENST00000588713 RBM25P49756 843 aaKnown RBP5.03□□□□□ -1.6
LIG3-211ENST00000588713 ATP2B2Q01814 1243 aa5.03□□□□□ -1.6
LIG3-211ENST00000588713 RAB3GAP1Q15042 981 aa5.03□□□□□ -1.6
LIG3-211ENST00000588713 LRRC41Q15345 812 aa5.03□□□□□ -1.6
LIG3-211ENST00000588713 CCDC27Q2M243 656 aa5.03□□□□□ -1.6
LIG3-211ENST00000588713 NOL9Q5SY16 702 aaKnown RBP5.03□□□□□ -1.6
LIG3-211ENST00000588713 SWT1Q5T5J6 900 aaKnown RBP5.03□□□□□ -1.6
LIG3-211ENST00000588713 WDR78Q5VTH9 848 aa5.03□□□□□ -1.6
LIG3-211ENST00000588713 PADI6Q6TGC4 694 aa5.03□□□□□ -1.6
LIG3-211ENST00000588713 LRP10Q7Z4F1 713 aa5.03□□□□□ -1.6
LIG3-211ENST00000588713 GPR142Q7Z601 462 aa5.03□□□□□ -1.6
LIG3-211ENST00000588713 SPRED2Q7Z698 418 aa5.03□□□□□ -1.6
LIG3-211ENST00000588713 CCDC84Q86UT8 332 aaPredicted RBP5.03□□□□□ -1.6
LIG3-211ENST00000588713 ZSCAN30Q86W11 494 aa5.03□□□□□ -1.6
LIG3-211ENST00000588713 SLF2Q8IX21 1173 aa5.03□□□□□ -1.6
LIG3-211ENST00000588713 TRPV1Q8NER1 839 aa5.03□□□□□ -1.6
LIG3-211ENST00000588713 JARID2Q92833 1246 aaPredicted RBP5.03□□□□□ -1.6
LIG3-211ENST00000588713 C22orf23Q9BZE7 217 aa5.03□□□□□ -1.6
LIG3-211ENST00000588713 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.03□□□□□ -1.6
LIG3-211ENST00000588713 IL23AQ9NPF7 189 aa5.03□□□□□ -1.6
LIG3-211ENST00000588713 PRKAG3Q9UGI9 489 aa5.03□□□□□ -1.6
LIG3-211ENST00000588713 FAM50BQ9Y247 325 aa5.03□□□□□ -1.6
LIG3-211ENST00000588713 A0A1W2PQ45 241 aaPredicted RBP5.02□□□□□ -1.61
LIG3-211ENST00000588713 A0A1W2PQY0 241 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 OFD1O75665 1012 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms