RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 PRELPP51888 382 aa6.34□□□□□ -1.39
LIG3-210ENST00000588109 GDF10P55107 478 aa6.34□□□□□ -1.39
LIG3-210ENST00000588109 CCDC129Q6ZRS4 1044 aa6.34□□□□□ -1.39
LIG3-210ENST00000588109 OGFOD1Q8N543 542 aa6.34□□□□□ -1.39
LIG3-210ENST00000588109 RNF217Q8TC41 542 aa6.34□□□□□ -1.39
LIG3-210ENST00000588109 OSBP2Q969R2 916 aa6.34□□□□□ -1.39
LIG3-210ENST00000588109 TEKT1Q969V4 418 aa6.34□□□□□ -1.39
LIG3-210ENST00000588109 ZSCAN10Q96SZ4 725 aaPredicted RBP6.34□□□□□ -1.39
LIG3-210ENST00000588109 SEC62Q99442 399 aaKnown RBP6.34□□□□□ -1.39
LIG3-210ENST00000588109 PUS7LQ9H0K6 701 aaKnown RBP6.34□□□□□ -1.39
LIG3-210ENST00000588109 VRTNQ9H8Y1 702 aa6.34□□□□□ -1.39
LIG3-210ENST00000588109 ARMT1Q9H993 441 aa6.34□□□□□ -1.39
LIG3-210ENST00000588109 DNAAF2Q9NVR5 837 aaKnown RBP6.34□□□□□ -1.39
LIG3-210ENST00000588109 AATFQ9NY61 560 aaKnown RBP eCLIP6.34□□□□□ -1.39
LIG3-210ENST00000588109 NXF1Q9UBU9 619 aaKnown RBP6.34□□□□□ -1.39
LIG3-210ENST00000588109 SERTAD1Q9UHV2 236 aa6.34□□□□□ -1.39
LIG3-210ENST00000588109 HDAC9Q9UKV0 1011 aa6.34□□□□□ -1.39
LIG3-210ENST00000588109 PSME4Q14997 1843 aa6.34□□□□□ -1.4
LIG3-210ENST00000588109 GOLGB1Q14789 3259 aaKnown RBP6.33□□□□□ -1.4
LIG3-210ENST00000588109 DICER1Q9UPY3 1922 aaKnown RBP6.33□□□□□ -1.4
LIG3-210ENST00000588109 ZNF541Q9H0D2 1346 aa6.33□□□□□ -1.4
LIG3-210ENST00000588109 GPAA1O43292 621 aa6.33□□□□□ -1.4
LIG3-210ENST00000588109 INHAP05111 366 aa6.33□□□□□ -1.4
LIG3-210ENST00000588109 GNAT2P19087 354 aa6.33□□□□□ -1.4
LIG3-210ENST00000588109 RASA1P20936 1047 aa6.33□□□□□ -1.4
LIG3-210ENST00000588109 RFX1P22670 979 aa6.33□□□□□ -1.4
LIG3-210ENST00000588109 MCCP23508 829 aa6.33□□□□□ -1.4
LIG3-210ENST00000588109 RPS12P25398 132 aaKnown RBP6.33□□□□□ -1.4
LIG3-210ENST00000588109 BTDP43251 543 aa6.33□□□□□ -1.4
LIG3-210ENST00000588109 CRKP46108 304 aa6.33□□□□□ -1.4
LIG3-210ENST00000588109 TLR1Q15399 786 aa6.33□□□□□ -1.4
LIG3-210ENST00000588109 GNASQ5JWF2 1037 aa6.33□□□□□ -1.4
LIG3-210ENST00000588109 ADGRA1Q86SQ6 560 aa6.33□□□□□ -1.4
LIG3-210ENST00000588109 ZNF589Q86UQ0 364 aaPredicted RBP6.33□□□□□ -1.4
LIG3-210ENST00000588109 AGBL3Q8NEM8 1001 aa6.33□□□□□ -1.4
LIG3-210ENST00000588109 ZNF775Q96BV0 537 aaPredicted RBP6.33□□□□□ -1.4
LIG3-210ENST00000588109 ETNK1Q9HBU6 452 aa6.33□□□□□ -1.4
LIG3-210ENST00000588109 SERPINA10Q9UK55 444 aa6.33□□□□□ -1.4
LIG3-210ENST00000588109 PCDHGA11Q9Y5H2 935 aa6.33□□□□□ -1.4
LIG3-210ENST00000588109 MAFBQ9Y5Q3 323 aaPredicted RBP6.33□□□□□ -1.4
LIG3-210ENST00000588109 SLC4A4Q9Y6R1 1079 aa6.33□□□□□ -1.4
LIG3-210ENST00000588109 SBF1O95248 1867 aa6.32□□□□□ -1.4
LIG3-210ENST00000588109 ZNF646O15015 1829 aaPredicted RBP6.32□□□□□ -1.4
LIG3-210ENST00000588109 GPR75-ASB3A0A0A6YYF3 556 aa6.32□□□□□ -1.4
LIG3-210ENST00000588109 IL2RAP01589 272 aa6.32□□□□□ -1.4
LIG3-210ENST00000588109 USP5P45974 858 aa6.32□□□□□ -1.4
LIG3-210ENST00000588109 GMPSP49915 693 aaPredicted RBP6.32□□□□□ -1.4
LIG3-210ENST00000588109 DYNLL1P63167 89 aaKnown RBP6.32□□□□□ -1.4
LIG3-210ENST00000588109 HDLBPQ00341 1268 aaKnown RBP6.32□□□□□ -1.4
LIG3-210ENST00000588109 PTSQ03393 145 aa6.32□□□□□ -1.4
LIG3-210ENST00000588109 POU4F2Q12837 409 aa6.32□□□□□ -1.4
LIG3-210ENST00000588109 DLGAP5Q15398 846 aa6.32□□□□□ -1.4
LIG3-210ENST00000588109 CFAP100Q494V2 611 aa6.32□□□□□ -1.4
LIG3-210ENST00000588109 FOXD4L5Q5VV16 416 aaPredicted RBP6.32□□□□□ -1.4
LIG3-210ENST00000588109 HHIPL2Q6UWX4 724 aa6.32□□□□□ -1.4
LIG3-210ENST00000588109 CERS3Q8IU89 383 aa6.32□□□□□ -1.4
LIG3-210ENST00000588109 GPC2Q8N158 579 aa6.32□□□□□ -1.4
LIG3-210ENST00000588109 LCORLQ8N3X6 602 aa6.32□□□□□ -1.4
LIG3-210ENST00000588109 ZNF384Q8TF68 577 aa6.32□□□□□ -1.4
LIG3-210ENST00000588109 STRBPQ96SI9 672 aaKnown RBP6.32□□□□□ -1.4
LIG3-210ENST00000588109 CRNKL1Q9BZJ0 848 aaKnown RBP6.32□□□□□ -1.4
LIG3-210ENST00000588109 NACAP1Q9BZK3 213 aa6.32□□□□□ -1.4
LIG3-210ENST00000588109 GRIP2Q9C0E4 1043 aa6.32□□□□□ -1.4
LIG3-210ENST00000588109 IL25Q9H293 177 aa6.32□□□□□ -1.4
LIG3-210ENST00000588109 DAGLAQ9Y4D2 1042 aa6.32□□□□□ -1.4
LIG3-210ENST00000588109 MYH2Q9UKX2 1941 aa6.32□□□□□ -1.4
LIG3-210ENST00000588109 GAKO14976 1311 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 H7C1D1 291 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 TERTO14746 1132 aaKnown RBP6.31□□□□□ -1.4
LIG3-210ENST00000588109 MYO1BO43795 1136 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 DDNO94850 711 aaPredicted RBP6.31□□□□□ -1.4
LIG3-210ENST00000588109 STAU1O95793 577 aaKnown RBP6.31□□□□□ -1.4
LIG3-210ENST00000588109 HSPD1P10809 573 aaKnown RBP6.31□□□□□ -1.4
LIG3-210ENST00000588109 RHOQP17081 205 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 TDO2P48775 406 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 MMP14P50281 582 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 PTH1RQ03431 593 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 VPS53Q5VIR6 699 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 TAS1R3Q7RTX0 852 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 NPAS3Q8IXF0 933 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 AMOTL1Q8IY63 956 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 TEX11Q8IYF3 940 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 TPCN2Q8NHX9 752 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 SH3RF3Q8TEJ3 882 aaPredicted RBP6.31□□□□□ -1.4
LIG3-210ENST00000588109 SDR42E1Q8WUS8 393 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 DPF2Q92785 391 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 ZDHHC15Q96MV8 337 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 GMLQ99445 158 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 RIOK1Q9BRS2 568 aaKnown RBP6.31□□□□□ -1.4
LIG3-210ENST00000588109 DSCC1Q9BVC3 393 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 MRIQ9BWK5 157 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 C22orf23Q9BZE7 217 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 LSG1Q9H089 658 aaKnown RBP6.31□□□□□ -1.4
LIG3-210ENST00000588109 NAPBQ9H115 298 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 MYOZ2Q9NPC6 264 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 USP40Q9NVE5 1235 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 TMOD2Q9NZR1 351 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 CTNNA3Q9UI47 895 aa6.31□□□□□ -1.4
LIG3-210ENST00000588109 CNOT7Q9UIV1 285 aaKnown RBP6.31□□□□□ -1.4
LIG3-210ENST00000588109 RBM8AQ9Y5S9 174 aaKnown RBP6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms