RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 SPNS2Q8IVW8 549 aa7.15□□□□□ -1.26
LIG3-206ENST00000586058 FAM177A1Q8N128 213 aaPredicted RBP7.15□□□□□ -1.26
LIG3-206ENST00000586058 ZNF713Q8N859 430 aaPredicted RBP7.15□□□□□ -1.26
LIG3-206ENST00000586058 ANKS1AQ92625 1134 aa7.15□□□□□ -1.26
LIG3-206ENST00000586058 PHKBQ93100 1093 aa7.15□□□□□ -1.26
LIG3-206ENST00000586058 DCPSQ96C86 337 aaKnown RBP7.15□□□□□ -1.26
LIG3-206ENST00000586058 RRP36Q96EU6 259 aaKnown RBP7.15□□□□□ -1.26
LIG3-206ENST00000586058 FEZ1Q99689 392 aa7.15□□□□□ -1.26
LIG3-206ENST00000586058 TMEM47Q9BQJ4 181 aa7.15□□□□□ -1.26
LIG3-206ENST00000586058 GOPCQ9HD26 462 aa7.15□□□□□ -1.26
LIG3-206ENST00000586058 GINM1Q9NU53 330 aa7.15□□□□□ -1.26
LIG3-206ENST00000586058 GPRC5DQ9NZD1 345 aa7.15□□□□□ -1.26
LIG3-206ENST00000586058 SYNPO2Q9UMS6 1093 aa7.15□□□□□ -1.26
LIG3-206ENST00000586058 NOL7Q9UMY1 257 aaKnown RBP7.15□□□□□ -1.26
LIG3-206ENST00000586058 MTMR6Q9Y217 621 aa7.15□□□□□ -1.26
LIG3-206ENST00000586058 LOC285556D6RIA3 1793 aa7.15□□□□□ -1.27
LIG3-206ENST00000586058 PAPPA2Q9BXP8 1791 aa7.15□□□□□ -1.27
LIG3-206ENST00000586058 IQCA1LA6NCM1 817 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 MYH7BA7E2Y1 1941 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 PRPF3O43395 683 aaKnown RBP7.14□□□□□ -1.27
LIG3-206ENST00000586058 FIBPO43427 364 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 GDF11O95390 407 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 ASNSP08243 561 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 AKR1B1P15121 316 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 CALML3P27482 149 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 CDC27P30260 824 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 SHMT1P34896 483 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 KRT2P35908 639 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 TROAPQ12815 778 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 MMRN1Q13201 1228 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 PKP1Q13835 747 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 COL9A3Q14050 684 aaPredicted RBP7.14□□□□□ -1.27
LIG3-206ENST00000586058 NBPF9Q3BBW0 867 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 FOXD4L6Q3SYB3 417 aaPredicted RBP7.14□□□□□ -1.27
LIG3-206ENST00000586058 C9orf131Q5VYM1 1079 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 TATDN1Q6P1N9 297 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 FOXD4L3Q6VB84 417 aaPredicted RBP7.14□□□□□ -1.27
LIG3-206ENST00000586058 USP48Q86UV5 1035 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 FERMT3Q86UX7 667 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 LRRC47Q8N1G4 583 aaKnown RBP7.14□□□□□ -1.27
LIG3-206ENST00000586058 CCDC82Q8N4S0 544 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 DCAF4Q8WV16 495 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 CNTNAP5Q8WYK1 1306 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 SPATA32Q96LK8 384 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 PITPNM2Q9BZ72 1349 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 TMEM39BQ9GZU3 492 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 AS3MTQ9HBK9 375 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 ADARB2Q9NS39 739 aaKnown RBP7.14□□□□□ -1.27
LIG3-206ENST00000586058 MTMR4Q9NYA4 1195 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 NYAP2Q9P242 653 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 CLIP2Q9UDT6 1046 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 BAZ2BQ9UIF8 2168 aaKnown RBP7.14□□□□□ -1.27
LIG3-206ENST00000586058 HACL1Q9UJ83 578 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 CEP131Q9UPN4 1083 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 PCDHAC2Q9Y5I4 1007 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 TACC3Q9Y6A5 838 aa7.14□□□□□ -1.27
LIG3-206ENST00000586058 DDX49Q9Y6V7 483 aaKnown RBP7.14□□□□□ -1.27
LIG3-206ENST00000586058 CNTNAP1P78357 1384 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 FAM196BA6NMK8 535 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 KLRF2D3W0D1 207 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 SMIM22K7EJ46 135 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 TBC1D12O60347 775 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 CTDNEP1O95476 244 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 MMP1P03956 469 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 SCG2P13521 617 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 SMARCA1P28370 1054 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 SLC1A4P43007 532 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 NLRP5P59047 1200 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 GUCY1B3Q02153 619 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 RASA3Q14644 834 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 SF3A1Q15459 793 aaKnown RBP7.13□□□□□ -1.27
LIG3-206ENST00000586058 SUPT20HL1Q3ZLR7 823 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 ANGEL2Q5VTE6 544 aaKnown RBP7.13□□□□□ -1.27
LIG3-206ENST00000586058 KRT40Q6A162 431 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 RCSD1Q6JBY9 416 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 SAMD7Q7Z3H4 446 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 SULF1Q8IWU6 871 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 JMYQ8N9B5 988 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 FBXO18Q8NFZ0 1043 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 BICD2Q8TD16 824 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 HS3ST6Q96QI5 342 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 SPZ1Q9BXG8 430 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 ZNF341Q9BYN7 854 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 SENP2Q9HC62 589 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 SH3GLB2Q9NR46 395 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 IL17RBQ9NRM6 502 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 GGA3Q9NZ52 723 aa7.13□□□□□ -1.27
LIG3-206ENST00000586058 ELP1O95163 1332 aa7.12□□□□□ -1.27
LIG3-206ENST00000586058 FAM205CA6NFA0 338 aa7.12□□□□□ -1.27
LIG3-206ENST00000586058 RIOK3O14730 519 aaKnown RBP7.12□□□□□ -1.27
LIG3-206ENST00000586058 PPFIA3O75145 1194 aa7.12□□□□□ -1.27
LIG3-206ENST00000586058 PRPF40AO75400 957 aaKnown RBP7.12□□□□□ -1.27
LIG3-206ENST00000586058 PLEKHA8P1O95397 391 aa7.12□□□□□ -1.27
LIG3-206ENST00000586058 GH2P01242 217 aa7.12□□□□□ -1.27
LIG3-206ENST00000586058 PDHBP11177 359 aa7.12□□□□□ -1.27
LIG3-206ENST00000586058 EEF2P13639 858 aaKnown RBP7.12□□□□□ -1.27
LIG3-206ENST00000586058 YBX3P16989 372 aaKnown RBP eCLIP7.12□□□□□ -1.27
LIG3-206ENST00000586058 GNA11P29992 359 aa7.12□□□□□ -1.27
LIG3-206ENST00000586058 NAPAP54920 295 aa7.12□□□□□ -1.27
LIG3-206ENST00000586058 STK38Q15208 465 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms