RNA–Protein interactions for RNA: ENST00000582772.1

MSI2-216, Transcript of musashi RNA binding protein 2, human

TSL 3

Gene MSI2, Length 398 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSI2-216	ENST00000582772	HIPK3	Q9H422	1215 aa		6.62	□□□□□ -1.35
MSI2-216	ENST00000582772	NSUN3	Q9H649	340 aa	Known RBP	6.62	□□□□□ -1.35
MSI2-216	ENST00000582772	PICK1	Q9NRD5	415 aa		6.62	□□□□□ -1.35
MSI2-216	ENST00000582772	RXFP3	Q9NSD7	469 aa		6.62	□□□□□ -1.35
MSI2-216	ENST00000582772	NRBP1	Q9UHY1	535 aa		6.62	□□□□□ -1.35
MSI2-216	ENST00000582772	MINPP1	Q9UNW1	487 aa		6.62	□□□□□ -1.35
MSI2-216	ENST00000582772	GPSM3	Q9Y4H4	160 aa		6.62	□□□□□ -1.35
MSI2-216	ENST00000582772	MYO10	Q9HD67	2058 aa		6.62	□□□□□ -1.35
MSI2-216	ENST00000582772	ENO4	A6NNW6	628 aa		6.61	□□□□□ -1.35
MSI2-216	ENST00000582772	TLR3	O15455	904 aa	Known RBP	6.61	□□□□□ -1.35
MSI2-216	ENST00000582772	TBX10	O75333	385 aa		6.61	□□□□□ -1.35
MSI2-216	ENST00000582772	GLRX3	O76003	335 aa	Known RBP	6.61	□□□□□ -1.35
MSI2-216	ENST00000582772	MYCN	P04198	464 aa	Predicted RBP	6.61	□□□□□ -1.35
MSI2-216	ENST00000582772	KLRK1	P26718	216 aa		6.61	□□□□□ -1.35
MSI2-216	ENST00000582772	HDLBP	Q00341	1268 aa	Known RBP	6.61	□□□□□ -1.35
MSI2-216	ENST00000582772	DLX2	Q07687	328 aa	Predicted RBP	6.61	□□□□□ -1.35
MSI2-216	ENST00000582772	CCDC152	Q4G0S7	254 aa		6.61	□□□□□ -1.35
MSI2-216	ENST00000582772	ANKRD18A	Q8IVF6	992 aa		6.61	□□□□□ -1.35
MSI2-216	ENST00000582772	SMRP1	Q8NCR6	262 aa		6.61	□□□□□ -1.35
MSI2-216	ENST00000582772	GTF3C2	Q8WUA4	911 aa	Predicted RBP	6.61	□□□□□ -1.35
MSI2-216	ENST00000582772	ZCCHC14	Q8WYQ9	949 aa	Known RBP	6.61	□□□□□ -1.35
MSI2-216	ENST00000582772	FAM89A	Q96GI7	184 aa		6.61	□□□□□ -1.35
MSI2-216	ENST00000582772	MSLNL	Q96KJ4	702 aa		6.61	□□□□□ -1.35
MSI2-216	ENST00000582772	PHF7	Q9BWX1	381 aa	Predicted RBP	6.61	□□□□□ -1.35
MSI2-216	ENST00000582772	NCDN	Q9UBB6	729 aa		6.61	□□□□□ -1.35
MSI2-216	ENST00000582772	CD207	Q9UJ71	328 aa		6.61	□□□□□ -1.35
MSI2-216	ENST00000582772	SRPK3	Q9UPE1	567 aa		6.61	□□□□□ -1.35
MSI2-216	ENST00000582772	WASF3	Q9UPY6	502 aa		6.61	□□□□□ -1.35
MSI2-216	ENST00000582772	TICRR	Q7Z2Z1	1910 aa		6.6	□□□□□ -1.35
MSI2-216	ENST00000582772	RFX7	Q2KHR2	1363 aa		6.6	□□□□□ -1.35
MSI2-216	ENST00000582772	UMODL1	Q5DID0	1318 aa		6.6	□□□□□ -1.35
MSI2-216	ENST00000582772	TRIM75P	A6NK02	468 aa		6.6	□□□□□ -1.35
MSI2-216	ENST00000582772	ARVCF	O00192	962 aa		6.6	□□□□□ -1.35
MSI2-216	ENST00000582772	IRS4	O14654	1257 aa	Predicted RBP	6.6	□□□□□ -1.35
MSI2-216	ENST00000582772	C1QL1	O75973	258 aa		6.6	□□□□□ -1.35
MSI2-216	ENST00000582772	HMOX1	P09601	288 aa		6.6	□□□□□ -1.35
MSI2-216	ENST00000582772	RARB	P10826	455 aa		6.6	□□□□□ -1.35
MSI2-216	ENST00000582772	HSP90B1	P14625	803 aa	Known RBP	6.6	□□□□□ -1.35
MSI2-216	ENST00000582772	PTPRE	P23469	700 aa		6.6	□□□□□ -1.35
MSI2-216	ENST00000582772	HOXA7	P31268	230 aa	Predicted RBP	6.6	□□□□□ -1.35
MSI2-216	ENST00000582772	CRK	P46108	304 aa		6.6	□□□□□ -1.35
MSI2-216	ENST00000582772	SH3D19	Q5HYK7	790 aa		6.6	□□□□□ -1.35
MSI2-216	ENST00000582772	FAM117B	Q6P1L5	589 aa		6.6	□□□□□ -1.35
MSI2-216	ENST00000582772	COPS6	Q7L5N1	327 aa		6.6	□□□□□ -1.35
MSI2-216	ENST00000582772	NPLOC4	Q8TAT6	608 aa		6.6	□□□□□ -1.35
MSI2-216	ENST00000582772	NOC4L	Q9BVI4	516 aa	Known RBP	6.6	□□□□□ -1.35
MSI2-216	ENST00000582772	RBPJL	Q9UBG7	517 aa		6.6	□□□□□ -1.35
MSI2-216	ENST00000582772	CREBBP	Q92793	2442 aa		6.6	□□□□□ -1.35
MSI2-216	ENST00000582772	TET1	Q8NFU7	2136 aa		6.59	□□□□□ -1.35
MSI2-216	ENST00000582772	LINC01553	A4QN01	128 aa		6.59	□□□□□ -1.35
MSI2-216	ENST00000582772	TK2	O00142	265 aa		6.59	□□□□□ -1.35
MSI2-216	ENST00000582772	SPTLC1	O15269	473 aa		6.59	□□□□□ -1.35
MSI2-216	ENST00000582772	ACTN1	P12814	892 aa		6.59	□□□□□ -1.35
MSI2-216	ENST00000582772	ATF7	P17544	494 aa	Predicted RBP	6.59	□□□□□ -1.35
MSI2-216	ENST00000582772	CACNB3	P54284	484 aa		6.59	□□□□□ -1.35
MSI2-216	ENST00000582772	HERVK_113	P62684	666 aa		6.59	□□□□□ -1.35
MSI2-216	ENST00000582772	MAP3K10	Q02779	954 aa		6.59	□□□□□ -1.35
MSI2-216	ENST00000582772	COASY	Q13057	564 aa		6.59	□□□□□ -1.35
MSI2-216	ENST00000582772	MTMR3	Q13615	1198 aa		6.59	□□□□□ -1.35
MSI2-216	ENST00000582772	PDIA6	Q15084	440 aa		6.59	□□□□□ -1.35
MSI2-216	ENST00000582772	KLHDC9	Q8NEP7	349 aa		6.59	□□□□□ -1.35
MSI2-216	ENST00000582772	FAM151A	Q8WW52	585 aa		6.59	□□□□□ -1.35
MSI2-216	ENST00000582772	SECISBP2L	Q93073	1101 aa	Known RBP	6.59	□□□□□ -1.35
MSI2-216	ENST00000582772	RTP3	Q9BQQ7	232 aa		6.59	□□□□□ -1.35
MSI2-216	ENST00000582772	ISCA1	Q9BUE6	129 aa		6.59	□□□□□ -1.35
MSI2-216	ENST00000582772	TBC1D2	Q9BYX2	928 aa		6.59	□□□□□ -1.35
MSI2-216	ENST00000582772	ADAM33	Q9BZ11	813 aa		6.59	□□□□□ -1.35
MSI2-216	ENST00000582772	TMOD2	Q9NZR1	351 aa		6.59	□□□□□ -1.35
MSI2-216	ENST00000582772	DBF4	Q9UBU7	674 aa	Predicted RBP	6.59	□□□□□ -1.35
MSI2-216	ENST00000582772	TTF2	Q9UNY4	1162 aa	Known RBP	6.59	□□□□□ -1.35
MSI2-216	ENST00000582772	SORCS3	Q9UPU3	1222 aa		6.59	□□□□□ -1.35
MSI2-216	ENST00000582772	NOTCH2	Q04721	2471 aa		6.59	□□□□□ -1.35
MSI2-216	ENST00000582772		A0A0U1RQG5	324 aa	Predicted RBP	6.58	□□□□□ -1.36
MSI2-216	ENST00000582772	KIN	O60870	393 aa	Known RBP	6.58	□□□□□ -1.36
MSI2-216	ENST00000582772	BAIAP3	O94812	1187 aa		6.58	□□□□□ -1.36
MSI2-216	ENST00000582772	PGK1	P00558	417 aa		6.58	□□□□□ -1.36
MSI2-216	ENST00000582772	HOXD8	P13378	290 aa	Predicted RBP	6.58	□□□□□ -1.36
MSI2-216	ENST00000582772	CST5	P28325	142 aa	Predicted RBP	6.58	□□□□□ -1.36
MSI2-216	ENST00000582772	CLUL1	Q15846	466 aa		6.58	□□□□□ -1.36
MSI2-216	ENST00000582772		Q3C1V9	767 aa		6.58	□□□□□ -1.36
MSI2-216	ENST00000582772	ZNF513	Q8N8E2	541 aa	Predicted RBP	6.58	□□□□□ -1.36
MSI2-216	ENST00000582772	SLC43A3	Q8NBI5	491 aa		6.58	□□□□□ -1.36
MSI2-216	ENST00000582772	FBXO22	Q8NEZ5	403 aa		6.58	□□□□□ -1.36
MSI2-216	ENST00000582772	WHAMM	Q8TF30	809 aa		6.58	□□□□□ -1.36
MSI2-216	ENST00000582772	RUNDC1	Q96C34	613 aa		6.58	□□□□□ -1.36
MSI2-216	ENST00000582772	FAM84B	Q96KN1	310 aa	Predicted RBP	6.58	□□□□□ -1.36
MSI2-216	ENST00000582772	AGBL1	Q96MI9	1066 aa		6.58	□□□□□ -1.36
MSI2-216	ENST00000582772	GLT1D1	Q96MS3	346 aa		6.58	□□□□□ -1.36
MSI2-216	ENST00000582772	CDC5L	Q99459	802 aa	Known RBP	6.58	□□□□□ -1.36
MSI2-216	ENST00000582772	CLMP	Q9H6B4	373 aa		6.58	□□□□□ -1.36
MSI2-216	ENST00000582772	CACNA1I	Q9P0X4	2223 aa		6.57	□□□□□ -1.36
MSI2-216	ENST00000582772		J3QKU1	62 aa		6.57	□□□□□ -1.36
MSI2-216	ENST00000582772	CTNND1	O60716	968 aa	Known RBP	6.57	□□□□□ -1.36
MSI2-216	ENST00000582772	CCL23	P55773	120 aa		6.57	□□□□□ -1.36
MSI2-216	ENST00000582772	TRIM28	Q13263	835 aa	Known RBP	6.57	□□□□□ -1.36
MSI2-216	ENST00000582772	EP400NL	Q6ZTU2	488 aa		6.57	□□□□□ -1.36
MSI2-216	ENST00000582772	CCAR1	Q8IX12	1150 aa	Known RBP	6.57	□□□□□ -1.36
MSI2-216	ENST00000582772	ZDHHC15	Q96MV8	337 aa		6.57	□□□□□ -1.36
MSI2-216	ENST00000582772	MRI	Q9BWK5	157 aa		6.57	□□□□□ -1.36
MSI2-216	ENST00000582772	PARD6A	Q9NPB6	346 aa		6.57	□□□□□ -1.36

Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms