RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, human

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFFL-208	ENST00000581039	DCDC2C	A8MYV0	355 aa		12	□□□□□ -0.49
RFFL-208	ENST00000581039	WDR46	O15213	610 aa	Known RBP	12	□□□□□ -0.49
RFFL-208	ENST00000581039	PGK2	P07205	417 aa		12	□□□□□ -0.49
RFFL-208	ENST00000581039	CYP2D6	P10635	497 aa		12	□□□□□ -0.49
RFFL-208	ENST00000581039	STAT3	P40763	770 aa		12	□□□□□ -0.49
RFFL-208	ENST00000581039	EPHB4	P54760	987 aa		12	□□□□□ -0.49
RFFL-208	ENST00000581039	GRIN2C	Q14957	1233 aa		12	□□□□□ -0.49
RFFL-208	ENST00000581039	SLC44A5	Q8NCS7	719 aa		12	□□□□□ -0.49
RFFL-208	ENST00000581039	DYNLL2	Q96FJ2	89 aa		12	□□□□□ -0.49
RFFL-208	ENST00000581039	CNPY2	Q9Y2B0	182 aa		12	□□□□□ -0.49
RFFL-208	ENST00000581039	EXOC6B	Q9Y2D4	811 aa		12	□□□□□ -0.49
RFFL-208	ENST00000581039	ZNF532	Q9HCE3	1301 aa		12	□□□□□ -0.49
RFFL-208	ENST00000581039	AKR1A1	P14550	325 aa		11.99	□□□□□ -0.49
RFFL-208	ENST00000581039	AKR1B1	P15121	316 aa		11.99	□□□□□ -0.49
RFFL-208	ENST00000581039	TAL1	P17542	331 aa	Predicted RBP	11.99	□□□□□ -0.49
RFFL-208	ENST00000581039	ZNF792	Q3KQV3	632 aa		11.99	□□□□□ -0.49
RFFL-208	ENST00000581039	HSP90AB4P	Q58FF6	505 aa		11.99	□□□□□ -0.49
RFFL-208	ENST00000581039	TJAP1	Q5JTD0	557 aa		11.99	□□□□□ -0.49
RFFL-208	ENST00000581039	RIOX2	Q8IUF8	465 aa		11.99	□□□□□ -0.49
RFFL-208	ENST00000581039	CLEC10A	Q8IUN9	316 aa		11.99	□□□□□ -0.49
RFFL-208	ENST00000581039	AMOTL1	Q8IY63	956 aa		11.99	□□□□□ -0.49
RFFL-208	ENST00000581039	LCORL	Q8N3X6	602 aa		11.99	□□□□□ -0.49
RFFL-208	ENST00000581039	NUP133	Q8WUM0	1156 aa		11.99	□□□□□ -0.49
RFFL-208	ENST00000581039	CCDC17	Q96LX7	622 aa		11.99	□□□□□ -0.49
RFFL-208	ENST00000581039	TOX2	Q96NM4	488 aa		11.99	□□□□□ -0.49
RFFL-208	ENST00000581039	TSEN34	Q9BSV6	310 aa	Known RBP	11.99	□□□□□ -0.49
RFFL-208	ENST00000581039	STARD7	Q9NQZ5	370 aa		11.99	□□□□□ -0.49
RFFL-208	ENST00000581039	ADAMTS5	Q9UNA0	930 aa		11.99	□□□□□ -0.49
RFFL-208	ENST00000581039	ZNF236	Q9UL36	1845 aa		11.99	□□□□□ -0.49
RFFL-208	ENST00000581039	TTC28	Q96AY4	2481 aa		11.99	□□□□□ -0.49
RFFL-208	ENST00000581039	GOLIM4	O00461	696 aa		11.98	□□□□□ -0.49
RFFL-208	ENST00000581039	RAD21	O60216	631 aa		11.98	□□□□□ -0.49
RFFL-208	ENST00000581039	ZNF865	P0CJ78	1059 aa	Predicted RBP	11.98	□□□□□ -0.49
RFFL-208	ENST00000581039	DNAJB2	P25686	324 aa		11.98	□□□□□ -0.49
RFFL-208	ENST00000581039	COPB2	P35606	906 aa		11.98	□□□□□ -0.49
RFFL-208	ENST00000581039	ACLY	P53396	1101 aa		11.98	□□□□□ -0.49
RFFL-208	ENST00000581039	FAAP100	Q0VG06	881 aa		11.98	□□□□□ -0.49
RFFL-208	ENST00000581039	CEP85	Q6P2H3	762 aa		11.98	□□□□□ -0.49
RFFL-208	ENST00000581039	ANKRD33	Q7Z3H0	272 aa		11.98	□□□□□ -0.49
RFFL-208	ENST00000581039	DNAJC2	Q99543	621 aa	Known RBP	11.98	□□□□□ -0.49
RFFL-208	ENST00000581039	ZNF576	Q9H609	170 aa		11.98	□□□□□ -0.49
RFFL-208	ENST00000581039	ARMT1	Q9H993	441 aa		11.98	□□□□□ -0.49
RFFL-208	ENST00000581039	KANSL2	Q9H9L4	492 aa		11.98	□□□□□ -0.49
RFFL-208	ENST00000581039	IL1RAPL2	Q9NP60	686 aa		11.98	□□□□□ -0.49
RFFL-208	ENST00000581039	ATP8A2	Q9NTI2	1148 aa		11.98	□□□□□ -0.49
RFFL-208	ENST00000581039	EYS	Q5T1H1	3165 aa		11.98	□□□□□ -0.49
RFFL-208	ENST00000581039	TCRBV5S4A2T	A0A5A2	114 aa		11.97	□□□□□ -0.49
RFFL-208	ENST00000581039	MOXD2P	A6NHM9	499 aa		11.97	□□□□□ -0.49
RFFL-208	ENST00000581039	VWA5A	O00534	786 aa		11.97	□□□□□ -0.49
RFFL-208	ENST00000581039	TIMP1	P01033	207 aa		11.97	□□□□□ -0.49
RFFL-208	ENST00000581039	EEF2	P13639	858 aa	Known RBP	11.97	□□□□□ -0.49
RFFL-208	ENST00000581039	CDK8	P49336	464 aa		11.97	□□□□□ -0.49
RFFL-208	ENST00000581039	CCDC174	Q6PII3	467 aa		11.97	□□□□□ -0.49
RFFL-208	ENST00000581039	CLASRP	Q8N2M8	674 aa	Known RBP	11.97	□□□□□ -0.49
RFFL-208	ENST00000581039	MSL3	Q8N5Y2	521 aa	Known RBP	11.97	□□□□□ -0.49
RFFL-208	ENST00000581039	RHPN1	Q8TCX5	695 aa		11.97	□□□□□ -0.49
RFFL-208	ENST00000581039	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	11.97	□□□□□ -0.49
RFFL-208	ENST00000581039	TIFA	Q96CG3	184 aa		11.97	□□□□□ -0.49
RFFL-208	ENST00000581039	DDRGK1	Q96HY6	314 aa		11.97	□□□□□ -0.49
RFFL-208	ENST00000581039	GOPC	Q9HD26	462 aa		11.97	□□□□□ -0.49
RFFL-208	ENST00000581039	FBXO28	Q9NVF7	368 aa		11.97	□□□□□ -0.49
RFFL-208	ENST00000581039	FAM184B	Q9ULE4	1060 aa		11.97	□□□□□ -0.49
RFFL-208	ENST00000581039	PPP1R9A	Q9ULJ8	1098 aa		11.97	□□□□□ -0.49
RFFL-208	ENST00000581039	PRUNE2	Q8WUY3	3088 aa		11.96	□□□□□ -0.49
RFFL-208	ENST00000581039	CDH23	Q9H251	3354 aa		11.96	□□□□□ -0.49
RFFL-208	ENST00000581039	CCER2	I3L3R5	266 aa		11.96	□□□□□ -0.49
RFFL-208	ENST00000581039	TNFRSF10A	O00220	468 aa		11.96	□□□□□ -0.49
RFFL-208	ENST00000581039	PRKAB2	O43741	272 aa		11.96	□□□□□ -0.49
RFFL-208	ENST00000581039	ADAMTS4	O75173	837 aa		11.96	□□□□□ -0.49
RFFL-208	ENST00000581039	IFIT2	P09913	472 aa	Known RBP	11.96	□□□□□ -0.49
RFFL-208	ENST00000581039	KCNA10	Q16322	511 aa		11.96	□□□□□ -0.49
RFFL-208	ENST00000581039	C12orf60	Q5U649	245 aa		11.96	□□□□□ -0.49
RFFL-208	ENST00000581039	USP38	Q8NB14	1042 aa		11.96	□□□□□ -0.49
RFFL-208	ENST00000581039	VTI1A	Q96AJ9	217 aa		11.96	□□□□□ -0.49
RFFL-208	ENST00000581039	LENG1	Q96BZ8	264 aa	Predicted RBP	11.96	□□□□□ -0.49
RFFL-208	ENST00000581039	DDX11	Q96FC9	970 aa		11.96	□□□□□ -0.49
RFFL-208	ENST00000581039	BCL11A	Q9H165	835 aa		11.96	□□□□□ -0.49
RFFL-208	ENST00000581039	SMCHD1	A6NHR9	2005 aa		11.96	□□□□□ -0.5
RFFL-208	ENST00000581039	SPTBN5	Q9NRC6	3674 aa	Known RBP	11.95	□□□□□ -0.5
RFFL-208	ENST00000581039	SYNRG	Q9UMZ2	1314 aa		11.95	□□□□□ -0.5
RFFL-208	ENST00000581039	CYP2D7	A0A087X1C5	515 aa		11.95	□□□□□ -0.5
RFFL-208	ENST00000581039	USP17L12	C9JPN9	530 aa		11.95	□□□□□ -0.5
RFFL-208	ENST00000581039	USP17L21	D6R901	530 aa		11.95	□□□□□ -0.5
RFFL-208	ENST00000581039	APBB1	O00213	710 aa		11.95	□□□□□ -0.5
RFFL-208	ENST00000581039	MBD4	O95243	580 aa		11.95	□□□□□ -0.5
RFFL-208	ENST00000581039	RLBP1	P12271	317 aa		11.95	□□□□□ -0.5
RFFL-208	ENST00000581039	PPIG	Q13427	754 aa	Known RBP eCLIP	11.95	□□□□□ -0.5	9e-12	■■■■□ 24.8
RFFL-208	ENST00000581039	FAM83B	Q5T0W9	1011 aa		11.95	□□□□□ -0.5
RFFL-208	ENST00000581039	MFSD5	Q6N075	450 aa		11.95	□□□□□ -0.5
RFFL-208	ENST00000581039	CCDC129	Q6ZRS4	1044 aa		11.95	□□□□□ -0.5
RFFL-208	ENST00000581039	PCSK9	Q8NBP7	692 aa	Known RBP	11.95	□□□□□ -0.5
RFFL-208	ENST00000581039	KLHDC9	Q8NEP7	349 aa		11.95	□□□□□ -0.5
RFFL-208	ENST00000581039	PPM1E	Q8WY54	764 aa		11.95	□□□□□ -0.5
RFFL-208	ENST00000581039	GLT1D1	Q96MS3	346 aa		11.95	□□□□□ -0.5
RFFL-208	ENST00000581039	GAS2L1	Q99501	681 aa	Predicted RBP	11.95	□□□□□ -0.5
RFFL-208	ENST00000581039	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	11.95	□□□□□ -0.5	2e-7	■■■□□ 18.7
RFFL-208	ENST00000581039	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	11.95	□□□□□ -0.5
RFFL-208	ENST00000581039	ZHX1	Q9UKY1	873 aa	Predicted RBP	11.95	□□□□□ -0.5
RFFL-208	ENST00000581039	ZNF214	Q9UL59	606 aa	Predicted RBP	11.95	□□□□□ -0.5
RFFL-208	ENST00000581039	ROBO3	Q96MS0	1386 aa		11.94	□□□□□ -0.5

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