RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 SPATC1LQ9H0A9 340 aa17.61■□□□□ 0.41
SS18-212ENST00000579061 RNF208Q9H0X6 261 aa17.61■□□□□ 0.41
SS18-212ENST00000579061 SLC15A5A6NIM6 579 aa17.6■□□□□ 0.41
SS18-212ENST00000579061 PCP11498 1178 aaKnown RBP17.6■□□□□ 0.41
SS18-212ENST00000579061 PTPREP23469 700 aa17.6■□□□□ 0.41
SS18-212ENST00000579061 GJA8P48165 433 aa17.6■□□□□ 0.41
SS18-212ENST00000579061 FAM47AQ5JRC9 791 aa17.6■□□□□ 0.41
SS18-212ENST00000579061 ATG4CQ96DT6 458 aa17.6■□□□□ 0.41
SS18-212ENST00000579061 MOV10L1Q9BXT6 1211 aaKnown RBP17.6■□□□□ 0.41
SS18-212ENST00000579061 PPP1R9AQ9ULJ8 1098 aa17.6■□□□□ 0.41
SS18-212ENST00000579061 IVNS1ABPQ9Y6Y0 642 aa17.6■□□□□ 0.41
SS18-212ENST00000579061 ZNF236Q9UL36 1845 aa17.6■□□□□ 0.41
SS18-212ENST00000579061 ZNFX1Q9P2E3 1918 aaKnown RBP17.59■□□□□ 0.41
SS18-212ENST00000579061 LAMA4Q16363 1823 aa17.59■□□□□ 0.41
SS18-212ENST00000579061 TSPY2A6NKD2 308 aa17.59■□□□□ 0.41
SS18-212ENST00000579061 STRNO43815 780 aa17.59■□□□□ 0.41
SS18-212ENST00000579061 RAD21O60216 631 aa17.59■□□□□ 0.41
SS18-212ENST00000579061 NDUFB10O96000 172 aa17.59■□□□□ 0.41
SS18-212ENST00000579061 CYP2B6P20813 491 aa17.59■□□□□ 0.41
SS18-212ENST00000579061 MAP2K5Q13163 448 aa17.59■□□□□ 0.41
SS18-212ENST00000579061 FAM83BQ5T0W9 1011 aa17.59■□□□□ 0.41
SS18-212ENST00000579061 CWC27Q6UX04 472 aaKnown RBP17.59■□□□□ 0.41
SS18-212ENST00000579061 GMCL1P1Q8NEA9 526 aa17.59■□□□□ 0.41
SS18-212ENST00000579061 APBA2Q99767 749 aa17.59■□□□□ 0.41
SS18-212ENST00000579061 UNC93B1Q9H1C4 597 aa17.59■□□□□ 0.41
SS18-212ENST00000579061 MKI67P46013 3256 aaKnown RBP17.58■□□□□ 0.41
SS18-212ENST00000579061 HOXC6P09630 235 aa17.58■□□□□ 0.4
SS18-212ENST00000579061 GSPT1P15170 499 aaKnown RBP17.58■□□□□ 0.4
SS18-212ENST00000579061 GRB14Q14449 540 aa17.58■□□□□ 0.4
SS18-212ENST00000579061 WDR78Q5VTH9 848 aa17.58■□□□□ 0.4
SS18-212ENST00000579061 TRIB2Q92519 343 aa17.58■□□□□ 0.4
SS18-212ENST00000579061 MROH8Q9H579 483 aa17.58■□□□□ 0.4
SS18-212ENST00000579061 PAK6Q9NQU5 681 aaPredicted RBP17.58■□□□□ 0.4
SS18-212ENST00000579061 FBXO28Q9NVF7 368 aa17.58■□□□□ 0.4
SS18-212ENST00000579061 TACC3Q9Y6A5 838 aa17.58■□□□□ 0.4
SS18-212ENST00000579061 RPTORQ8N122 1335 aa17.57■□□□□ 0.4
SS18-212ENST00000579061 VWA5AO00534 786 aa17.57■□□□□ 0.4
SS18-212ENST00000579061 RANBP6O60518 1105 aaKnown RBP17.57■□□□□ 0.4
SS18-212ENST00000579061 SLC25A27O95847 323 aa17.57■□□□□ 0.4
SS18-212ENST00000579061 ZKSCAN1P17029 563 aaPredicted RBP17.57■□□□□ 0.4
SS18-212ENST00000579061 NOVP48745 357 aa17.57■□□□□ 0.4
SS18-212ENST00000579061 NT5C2P49902 561 aa17.57■□□□□ 0.4
SS18-212ENST00000579061 MAP3K21Q5TCX8 1036 aa17.57■□□□□ 0.4
SS18-212ENST00000579061 PRPF38AQ8NAV1 312 aaKnown RBP17.57■□□□□ 0.4
SS18-212ENST00000579061 U2AF1L4Q8WU68 220 aaKnown RBP17.57■□□□□ 0.4
SS18-212ENST00000579061 SHISA4Q96DD7 197 aa17.57■□□□□ 0.4
SS18-212ENST00000579061 SLF1Q9BQI6 1058 aa17.57■□□□□ 0.4
SS18-212ENST00000579061 DSCC1Q9BVC3 393 aa17.57■□□□□ 0.4
SS18-212ENST00000579061 INCENPQ9NQS7 918 aa17.57■□□□□ 0.4
SS18-212ENST00000579061 IL17RBQ9NRM6 502 aa17.57■□□□□ 0.4
SS18-212ENST00000579061 RAD50Q92878 1312 aa17.56■□□□□ 0.4
SS18-212ENST00000579061 SGPL1O95470 568 aa17.56■□□□□ 0.4
SS18-212ENST00000579061 ERCC3P19447 782 aa17.56■□□□□ 0.4
SS18-212ENST00000579061 COPB2P35606 906 aa17.56■□□□□ 0.4
SS18-212ENST00000579061 PLS1Q14651 629 aa17.56■□□□□ 0.4
SS18-212ENST00000579061 TMEM132BQ14DG7 1078 aa17.56■□□□□ 0.4
SS18-212ENST00000579061 AKNAD1Q5T1N1 836 aa17.56■□□□□ 0.4
SS18-212ENST00000579061 MFSD6Q6ZSS7 791 aa17.56■□□□□ 0.4
SS18-212ENST00000579061 RIOX2Q8IUF8 465 aa17.56■□□□□ 0.4
SS18-212ENST00000579061 ABRAQ8N0Z2 381 aa17.56■□□□□ 0.4
SS18-212ENST00000579061 REPS2Q8NFH8 660 aa17.56■□□□□ 0.4
SS18-212ENST00000579061 STAG1Q8WVM7 1258 aa17.56■□□□□ 0.4
SS18-212ENST00000579061 NUP88Q99567 741 aaPredicted RBP17.56■□□□□ 0.4
SS18-212ENST00000579061 RNF41Q9H4P4 317 aaPredicted RBP17.56■□□□□ 0.4
SS18-212ENST00000579061 HMX1Q9NP08 348 aaPredicted RBP17.56■□□□□ 0.4
SS18-212ENST00000579061 TCP11L1Q9NUJ3 509 aa17.56■□□□□ 0.4
SS18-212ENST00000579061 FEM1BQ9UK73 627 aa17.56■□□□□ 0.4
SS18-212ENST00000579061 SLFN13Q68D06 897 aa17.55■□□□□ 0.4
SS18-212ENST00000579061 SAMD1Q6SPF0 538 aaPredicted RBP17.55■□□□□ 0.4
SS18-212ENST00000579061 LRRC47Q8N1G4 583 aaKnown RBP17.55■□□□□ 0.4
SS18-212ENST00000579061 GMCL1Q96IK5 515 aa17.55■□□□□ 0.4
SS18-212ENST00000579061 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.55■□□□□ 0.4
SS18-212ENST00000579061 TOMM22Q9NS69 142 aa17.55■□□□□ 0.4
SS18-212ENST00000579061 ZNF214Q9UL59 606 aaPredicted RBP17.55■□□□□ 0.4
SS18-212ENST00000579061 STX8Q9UNK0 236 aa17.55■□□□□ 0.4
SS18-212ENST00000579061 ZNF213O14771 459 aa17.54■□□□□ 0.4
SS18-212ENST00000579061 ATP2A1O14983 1001 aa17.54■□□□□ 0.4
SS18-212ENST00000579061 PLA2G6O60733 806 aa17.54■□□□□ 0.4
SS18-212ENST00000579061 FDX1P10109 184 aa17.54■□□□□ 0.4
SS18-212ENST00000579061 BMP3P12645 472 aa17.54■□□□□ 0.4
SS18-212ENST00000579061 STAT3P40763 770 aa17.54■□□□□ 0.4
SS18-212ENST00000579061 HAND2P61296 217 aa17.54■□□□□ 0.4
SS18-212ENST00000579061 TRIM32Q13049 653 aa17.54■□□□□ 0.4
SS18-212ENST00000579061 NCAPG2Q86XI2 1143 aa17.54■□□□□ 0.4
SS18-212ENST00000579061 RUFY2Q8WXA3 655 aa17.54■□□□□ 0.4
SS18-212ENST00000579061 DEFB118Q96PH6 123 aa17.54■□□□□ 0.4
SS18-212ENST00000579061 NBPF3Q9H094 633 aa17.54■□□□□ 0.4
SS18-212ENST00000579061 CRISPLD2Q9H0B8 497 aa17.54■□□□□ 0.4
SS18-212ENST00000579061 CTNNA3Q9UI47 895 aa17.54■□□□□ 0.4
SS18-212ENST00000579061 NMT2O60551 498 aa17.53■□□□□ 0.4
SS18-212ENST00000579061 PRKAR2AP13861 404 aaKnown RBP17.53■□□□□ 0.4
SS18-212ENST00000579061 ADORA2AP29274 412 aa17.53■□□□□ 0.4
SS18-212ENST00000579061 CCL14Q16627 93 aa17.53■□□□□ 0.4
SS18-212ENST00000579061 RRP12Q5JTH9 1297 aaKnown RBP17.53■□□□□ 0.4
SS18-212ENST00000579061 DPP9Q86TI2 863 aa17.53■□□□□ 0.4
SS18-212ENST00000579061 FAM160B2Q86V87 743 aa17.53■□□□□ 0.4
SS18-212ENST00000579061 TBC1D10CQ8IV04 446 aa17.53■□□□□ 0.4
SS18-212ENST00000579061 CHURC1Q8WUH1 139 aa17.53■□□□□ 0.4
SS18-212ENST00000579061 SLC5A4Q9NY91 659 aa17.53■□□□□ 0.4
SS18-212ENST00000579061 ZBED4O75132 1171 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms