RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 KLRC3Q07444 240 aa18.42■□□□□ 0.54
SF3B3-215ENST00000577085 GRB14Q14449 540 aa18.42■□□□□ 0.54
SF3B3-215ENST00000577085 FAM47AQ5JRC9 791 aa18.42■□□□□ 0.54
SF3B3-215ENST00000577085 PPP4R3BQ5MIZ7 849 aa18.42■□□□□ 0.54
SF3B3-215ENST00000577085 SHCBP1Q8NEM2 672 aa18.42■□□□□ 0.54
SF3B3-215ENST00000577085 USP6NLQ92738 828 aa18.42■□□□□ 0.54
SF3B3-215ENST00000577085 CEP95Q96GE4 821 aa18.42■□□□□ 0.54
SF3B3-215ENST00000577085 FAM227BQ96M60 508 aa18.42■□□□□ 0.54
SF3B3-215ENST00000577085 TSPY2A6NKD2 308 aa18.41■□□□□ 0.54
SF3B3-215ENST00000577085 CCL14Q16627 93 aa18.41■□□□□ 0.54
SF3B3-215ENST00000577085 TOMM22Q9NS69 142 aa18.41■□□□□ 0.54
SF3B3-215ENST00000577085 MTMR4Q9NYA4 1195 aa18.41■□□□□ 0.54
SF3B3-215ENST00000577085 PPP1R9AQ9ULJ8 1098 aa18.41■□□□□ 0.54
SF3B3-215ENST00000577085 PLXNB2O15031 1838 aa18.4■□□□□ 0.54
SF3B3-215ENST00000577085 A0A0D9SFI3 127 aa18.4■□□□□ 0.54
SF3B3-215ENST00000577085 SLC25A27O95847 323 aa18.4■□□□□ 0.54
SF3B3-215ENST00000577085 NDUFB10O96000 172 aa18.4■□□□□ 0.54
SF3B3-215ENST00000577085 ADORA2AP29274 412 aa18.4■□□□□ 0.54
SF3B3-215ENST00000577085 IRX6P78412 446 aaPredicted RBP18.4■□□□□ 0.54
SF3B3-215ENST00000577085 CTDSPL2Q05D32 466 aa18.4■□□□□ 0.54
SF3B3-215ENST00000577085 CACNB2Q08289 660 aaPredicted RBP18.4■□□□□ 0.54
SF3B3-215ENST00000577085 NMIQ13287 307 aaPredicted RBP18.4■□□□□ 0.54
SF3B3-215ENST00000577085 VPS53Q5VIR6 699 aa18.4■□□□□ 0.54
SF3B3-215ENST00000577085 PLEKHM2Q8IWE5 1019 aa18.4■□□□□ 0.54
SF3B3-215ENST00000577085 NEDD1Q8NHV4 660 aa18.4■□□□□ 0.54
SF3B3-215ENST00000577085 NUP88Q99567 741 aaPredicted RBP18.4■□□□□ 0.54
SF3B3-215ENST00000577085 SLF1Q9BQI6 1058 aa18.4■□□□□ 0.54
SF3B3-215ENST00000577085 CRISPLD2Q9H0B8 497 aa18.4■□□□□ 0.54
SF3B3-215ENST00000577085 FBXO28Q9NVF7 368 aa18.4■□□□□ 0.54
SF3B3-215ENST00000577085 SYNPO2Q9UMS6 1093 aa18.4■□□□□ 0.54
SF3B3-215ENST00000577085 PDE4DIPQ5VU43 2346 aa18.4■□□□□ 0.54
SF3B3-215ENST00000577085 IGKV6D-41A0A0C4DH26 115 aa18.39■□□□□ 0.53
SF3B3-215ENST00000577085 VWA5AO00534 786 aa18.39■□□□□ 0.53
SF3B3-215ENST00000577085 RANBP6O60518 1105 aaKnown RBP18.39■□□□□ 0.53
SF3B3-215ENST00000577085 FCER1AP12319 257 aa18.39■□□□□ 0.53
SF3B3-215ENST00000577085 TMEM132BQ14DG7 1078 aa18.39■□□□□ 0.53
SF3B3-215ENST00000577085 MAP3K21Q5TCX8 1036 aa18.39■□□□□ 0.53
SF3B3-215ENST00000577085 NECAB2Q7Z6G3 386 aa18.39■□□□□ 0.53
SF3B3-215ENST00000577085 LRRC47Q8N1G4 583 aaKnown RBP18.39■□□□□ 0.53
SF3B3-215ENST00000577085 ANKLE1Q8NAG6 615 aa18.39■□□□□ 0.53
SF3B3-215ENST00000577085 OSBPL3Q9H4L5 887 aa18.39■□□□□ 0.53
SF3B3-215ENST00000577085 DIAPH3Q9NSV4 1193 aa18.39■□□□□ 0.53
SF3B3-215ENST00000577085 STX8Q9UNK0 236 aa18.39■□□□□ 0.53
SF3B3-215ENST00000577085 HIP1O00291 1037 aa18.38■□□□□ 0.53
SF3B3-215ENST00000577085 HOXC6P09630 235 aa18.38■□□□□ 0.53
SF3B3-215ENST00000577085 SDSP20132 328 aa18.38■□□□□ 0.53
SF3B3-215ENST00000577085 CNGA1P29973 690 aa18.38■□□□□ 0.53
SF3B3-215ENST00000577085 COPB2P35606 906 aa18.38■□□□□ 0.53
SF3B3-215ENST00000577085 STAT3P40763 770 aa18.38■□□□□ 0.53
SF3B3-215ENST00000577085 PRPF38AQ8NAV1 312 aaKnown RBP18.38■□□□□ 0.53
SF3B3-215ENST00000577085 MKL1Q969V6 931 aa18.38■□□□□ 0.53
SF3B3-215ENST00000577085 PAWRQ96IZ0 340 aaKnown RBP18.38■□□□□ 0.53
SF3B3-215ENST00000577085 NR2E3Q9Y5X4 410 aa18.38■□□□□ 0.53
SF3B3-215ENST00000577085 CCDC171Q6TFL3 1326 aa18.38■□□□□ 0.53
SF3B3-215ENST00000577085 PLIN4Q96Q06 1357 aa18.38■□□□□ 0.53
SF3B3-215ENST00000577085 A0A0G2JMZ2 1700 aa18.37■□□□□ 0.53
SF3B3-215ENST00000577085 ZBED4O75132 1171 aa18.37■□□□□ 0.53
SF3B3-215ENST00000577085 SLC4A3P48751 1232 aa18.37■□□□□ 0.53
SF3B3-215ENST00000577085 IKQ13123 557 aaPredicted RBP18.37■□□□□ 0.53
SF3B3-215ENST00000577085 KCTD2Q14681 263 aa18.37■□□□□ 0.53
SF3B3-215ENST00000577085 ALX1Q15699 326 aa18.37■□□□□ 0.53
SF3B3-215ENST00000577085 RRP12Q5JTH9 1297 aaKnown RBP18.37■□□□□ 0.53
SF3B3-215ENST00000577085 SLFN13Q68D06 897 aa18.37■□□□□ 0.53
SF3B3-215ENST00000577085 UBE2Q1Q7Z7E8 422 aa18.37■□□□□ 0.53
SF3B3-215ENST00000577085 ABRAQ8N0Z2 381 aa18.37■□□□□ 0.53
SF3B3-215ENST00000577085 GMCL1P1Q8NEA9 526 aa18.37■□□□□ 0.53
SF3B3-215ENST00000577085 KIFC2Q96AC6 838 aa18.37■□□□□ 0.53
SF3B3-215ENST00000577085 MMP19Q99542 508 aa18.37■□□□□ 0.53
SF3B3-215ENST00000577085 ANAPC4Q9UJX5 808 aa18.37■□□□□ 0.53
SF3B3-215ENST00000577085 ADAMTS5Q9UNA0 930 aa18.37■□□□□ 0.53
SF3B3-215ENST00000577085 GREB1LQ9C091 1923 aaPredicted RBP18.37■□□□□ 0.53
SF3B3-215ENST00000577085 FOXP2O15409 715 aa18.36■□□□□ 0.53
SF3B3-215ENST00000577085 EVI5O60447 810 aa18.36■□□□□ 0.53
SF3B3-215ENST00000577085 FGAP02671 866 aa18.36■□□□□ 0.53
SF3B3-215ENST00000577085 HSPD1P10809 573 aaKnown RBP18.36■□□□□ 0.53
SF3B3-215ENST00000577085 CCND3P30281 292 aaPredicted RBP18.36■□□□□ 0.53
SF3B3-215ENST00000577085 CWC27Q6UX04 472 aaKnown RBP18.36■□□□□ 0.53
SF3B3-215ENST00000577085 RIOX2Q8IUF8 465 aa18.36■□□□□ 0.53
SF3B3-215ENST00000577085 NPLOC4Q8TAT6 608 aa18.36■□□□□ 0.53
SF3B3-215ENST00000577085 TEX13BQ9BXU2 312 aa18.36■□□□□ 0.53
SF3B3-215ENST00000577085 NBPF3Q9H094 633 aa18.36■□□□□ 0.53
SF3B3-215ENST00000577085 FLRT1Q9NZU1 646 aa18.36■□□□□ 0.53
SF3B3-215ENST00000577085 FEM1BQ9UK73 627 aa18.36■□□□□ 0.53
SF3B3-215ENST00000577085 H0YGN5 161 aa18.35■□□□□ 0.53
SF3B3-215ENST00000577085 BMP3P12645 472 aa18.35■□□□□ 0.53
SF3B3-215ENST00000577085 CYP2C19P33261 490 aa18.35■□□□□ 0.53
SF3B3-215ENST00000577085 SLC1A4P43007 532 aa18.35■□□□□ 0.53
SF3B3-215ENST00000577085 OLFML2BQ68BL8 750 aa18.35■□□□□ 0.53
SF3B3-215ENST00000577085 SNRNP48Q6IEG0 339 aaKnown RBP18.35■□□□□ 0.53
SF3B3-215ENST00000577085 ZNF589Q86UQ0 364 aaPredicted RBP18.35■□□□□ 0.53
SF3B3-215ENST00000577085 INCENPQ9NQS7 918 aa18.35■□□□□ 0.53
SF3B3-215ENST00000577085 OGDHLQ9ULD0 1010 aa18.35■□□□□ 0.53
SF3B3-215ENST00000577085 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.35■□□□□ 0.53
SF3B3-215ENST00000577085 RLFQ13129 1914 aa18.35■□□□□ 0.53
SF3B3-215ENST00000577085 ZMYM6O95789 1325 aa18.34■□□□□ 0.53
SF3B3-215ENST00000577085 MSCO60682 206 aa18.34■□□□□ 0.53
SF3B3-215ENST00000577085 CPXCR1Q8N123 301 aa18.34■□□□□ 0.53
SF3B3-215ENST00000577085 DIS3LQ8TF46 1054 aaKnown RBP18.34■□□□□ 0.53
SF3B3-215ENST00000577085 CHMP4CQ96CF2 233 aa18.34■□□□□ 0.53
SF3B3-215ENST00000577085 C11orf49Q9H6J7 331 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms