RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 CPXCR1Q8N123 301 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 UBR7Q8N806 425 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 ZNF296Q8WUU4 475 aaPredicted RBP8.22□□□□□ -1.09
VPS53-217ENST00000575100 CRBNQ96SW2 442 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 SRRTQ9BXP5 876 aaKnown RBP8.22□□□□□ -1.09
VPS53-217ENST00000575100 GOLGA6AQ9NYA3 693 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 CLIC5Q9NZA1 410 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 PIM2Q9P1W9 311 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 POLG2Q9UHN1 485 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 CTDP1Q9Y5B0 961 aaPredicted RBP8.22□□□□□ -1.09
VPS53-217ENST00000575100 TIAM2Q8IVF5 1701 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 CEP350Q5VT06 3117 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 HOXB7P09629 217 aa8.21□□□□□ -1.09
VPS53-217ENST00000575100 SNRPA1P09661 255 aaKnown RBP8.21□□□□□ -1.09
VPS53-217ENST00000575100 FSTL1Q12841 308 aa8.21□□□□□ -1.09
VPS53-217ENST00000575100 GFOD2Q3B7J2 385 aa8.21□□□□□ -1.09
VPS53-217ENST00000575100 TNS4Q8IZW8 715 aa8.21□□□□□ -1.09
VPS53-217ENST00000575100 EDEM1Q92611 657 aa8.21□□□□□ -1.09
VPS53-217ENST00000575100 NOL7Q9UMY1 257 aaKnown RBP8.21□□□□□ -1.09
VPS53-217ENST00000575100 GTF2A1LQ9UNN4 478 aa8.21□□□□□ -1.09
VPS53-217ENST00000575100 DICER1Q9UPY3 1922 aaKnown RBP8.21□□□□□ -1.1
VPS53-217ENST00000575100 KDM2BQ8NHM5 1336 aa8.21□□□□□ -1.1
VPS53-217ENST00000575100 KIF16BQ96L93 1317 aa8.21□□□□□ -1.1
VPS53-217ENST00000575100 E2F8A0AVK6 867 aa8.21□□□□□ -1.1
VPS53-217ENST00000575100 BICDL2A1A5D9 508 aa8.21□□□□□ -1.1
VPS53-217ENST00000575100 KLRG2A4D1S0 409 aaPredicted RBP8.21□□□□□ -1.1
VPS53-217ENST00000575100 CPNE3O75131 537 aaKnown RBP8.21□□□□□ -1.1
VPS53-217ENST00000575100 HIP1RO75146 1068 aa8.21□□□□□ -1.1
VPS53-217ENST00000575100 TM4SF1P30408 202 aa8.21□□□□□ -1.1
VPS53-217ENST00000575100 FAM193AP78312 1265 aa8.21□□□□□ -1.1
VPS53-217ENST00000575100 CCDC30Q5VVM6 783 aa8.21□□□□□ -1.1
VPS53-217ENST00000575100 IL31Q6EBC2 164 aa8.21□□□□□ -1.1
VPS53-217ENST00000575100 CC2D1AQ6P1N0 951 aaPredicted RBP8.21□□□□□ -1.1
VPS53-217ENST00000575100 NBPF10Q6P3W6 841 aaKnown RBP8.21□□□□□ -1.1
VPS53-217ENST00000575100 INTS5Q6P9B9 1019 aaKnown RBP8.21□□□□□ -1.1
VPS53-217ENST00000575100 ATF7IPQ6VMQ6 1270 aa8.21□□□□□ -1.1
VPS53-217ENST00000575100 DNAJC10Q8IXB1 793 aa8.21□□□□□ -1.1
VPS53-217ENST00000575100 NBPF15Q8N660 670 aa8.21□□□□□ -1.1
VPS53-217ENST00000575100 TRMT2BQ96GJ1 504 aaKnown RBP8.21□□□□□ -1.1
VPS53-217ENST00000575100 MYO19Q96H55 970 aa8.21□□□□□ -1.1
VPS53-217ENST00000575100 COLQQ9Y215 455 aaPredicted RBP8.21□□□□□ -1.1
VPS53-217ENST00000575100 NUB1Q9Y5A7 615 aa8.21□□□□□ -1.1
VPS53-217ENST00000575100 SOS1Q07889 1333 aaPredicted RBP8.2□□□□□ -1.1
VPS53-217ENST00000575100 F6X3S4 739 aa8.2□□□□□ -1.1
VPS53-217ENST00000575100 POLRMTO00411 1230 aaKnown RBP8.2□□□□□ -1.1
VPS53-217ENST00000575100 IRS4O14654 1257 aaPredicted RBP8.2□□□□□ -1.1
VPS53-217ENST00000575100 A1BGP04217 495 aa8.2□□□□□ -1.1
VPS53-217ENST00000575100 MYL6BP14649 208 aa8.2□□□□□ -1.1
VPS53-217ENST00000575100 GEMIN4P57678 1058 aaKnown RBP8.2□□□□□ -1.1
VPS53-217ENST00000575100 PWP1Q13610 501 aa8.2□□□□□ -1.1
VPS53-217ENST00000575100 NBPF20Q3BBV1 942 aa8.2□□□□□ -1.1
VPS53-217ENST00000575100 PUS10Q3MIT2 529 aaKnown RBP8.2□□□□□ -1.1
VPS53-217ENST00000575100 ERFEQ4G0M1 354 aa8.2□□□□□ -1.1
VPS53-217ENST00000575100 PERM1Q5SV97 790 aa8.2□□□□□ -1.1
VPS53-217ENST00000575100 RNF19BQ6ZMZ0 732 aa8.2□□□□□ -1.1
VPS53-217ENST00000575100 KRT77Q7Z794 578 aa8.2□□□□□ -1.1
VPS53-217ENST00000575100 ZBTB33Q86T24 672 aa8.2□□□□□ -1.1
VPS53-217ENST00000575100 ENAHQ8N8S7 591 aaPredicted RBP8.2□□□□□ -1.1
VPS53-217ENST00000575100 ANKRD42Q8N9B4 389 aa8.2□□□□□ -1.1
VPS53-217ENST00000575100 USB1Q9BQ65 265 aaKnown RBP8.2□□□□□ -1.1
VPS53-217ENST00000575100 C2orf49Q9BVC5 232 aaPredicted RBP8.2□□□□□ -1.1
VPS53-217ENST00000575100 SRCIN1Q9C0H9 1055 aa8.2□□□□□ -1.1
VPS53-217ENST00000575100 BCL2L12Q9HB09 334 aa8.2□□□□□ -1.1
VPS53-217ENST00000575100 SRP68Q9UHB9 627 aaKnown RBP8.2□□□□□ -1.1
VPS53-217ENST00000575100 ANKRD31Q8N7Z5 1873 aa8.2□□□□□ -1.1
VPS53-217ENST00000575100 LAMB4A4D0S4 1761 aa8.19□□□□□ -1.1
VPS53-217ENST00000575100 DHX16O60231 1041 aaKnown RBP8.19□□□□□ -1.1
VPS53-217ENST00000575100 IRS1P35568 1242 aa8.19□□□□□ -1.1
VPS53-217ENST00000575100 SARSP49591 514 aaKnown RBP8.19□□□□□ -1.1
VPS53-217ENST00000575100 NEK3P51956 506 aa8.19□□□□□ -1.1
VPS53-217ENST00000575100 MTMR1Q13613 665 aa8.19□□□□□ -1.1
VPS53-217ENST00000575100 C1QTNF12Q5T7M4 302 aa8.19□□□□□ -1.1
VPS53-217ENST00000575100 ANO1Q5XXA6 986 aa8.19□□□□□ -1.1
VPS53-217ENST00000575100 ANKRD13DQ6ZTN6 518 aa8.19□□□□□ -1.1
VPS53-217ENST00000575100 SPATC1Q76KD6 591 aa8.19□□□□□ -1.1
VPS53-217ENST00000575100 SUGP1Q8IWZ8 645 aaKnown RBP8.19□□□□□ -1.1
VPS53-217ENST00000575100 TMEM57Q8N5G2 664 aa8.19□□□□□ -1.1
VPS53-217ENST00000575100 EPS8L3Q8TE67 593 aaKnown RBP8.19□□□□□ -1.1
VPS53-217ENST00000575100 STK31Q9BXU1 1019 aa8.19□□□□□ -1.1
VPS53-217ENST00000575100 SCN7AQ01118 1682 aa8.19□□□□□ -1.1
VPS53-217ENST00000575100 ARFGEF2Q9Y6D5 1785 aa8.19□□□□□ -1.1
VPS53-217ENST00000575100 PIP5K1CO60331 668 aa8.19□□□□□ -1.1
VPS53-217ENST00000575100 EYA4O95677 639 aa8.19□□□□□ -1.1
VPS53-217ENST00000575100 PLCG2P16885 1265 aa8.19□□□□□ -1.1
VPS53-217ENST00000575100 DGKGP49619 791 aa8.19□□□□□ -1.1
VPS53-217ENST00000575100 TERF1P54274 439 aa8.19□□□□□ -1.1
VPS53-217ENST00000575100 PDE3AQ14432 1141 aa8.19□□□□□ -1.1
VPS53-217ENST00000575100 FBXL19Q6PCT2 694 aa8.19□□□□□ -1.1
VPS53-217ENST00000575100 SH3BP5LQ7L8J4 393 aa8.19□□□□□ -1.1
VPS53-217ENST00000575100 DZIP1LQ8IYY4 767 aaKnown RBP8.19□□□□□ -1.1
VPS53-217ENST00000575100 STAG2Q8N3U4 1231 aa8.19□□□□□ -1.1
VPS53-217ENST00000575100 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.19□□□□□ -1.1
VPS53-217ENST00000575100 ATL2Q8NHH9 583 aa8.19□□□□□ -1.1
VPS53-217ENST00000575100 KLRG1Q96E93 195 aa8.19□□□□□ -1.1
VPS53-217ENST00000575100 HOOK2Q96ED9 719 aa8.19□□□□□ -1.1
VPS53-217ENST00000575100 DBF4Q9UBU7 674 aaPredicted RBP8.19□□□□□ -1.1
VPS53-217ENST00000575100 FER1L6Q2WGJ9 1857 aa8.18□□□□□ -1.1
VPS53-217ENST00000575100 ABCC4O15439 1325 aa8.18□□□□□ -1.1
VPS53-217ENST00000575100 PRSS47A8MTI9 375 aa8.18□□□□□ -1.1
VPS53-217ENST00000575100 GSG1L2A8MUP6 293 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms