RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 NWD2Q9ULI1 1742 aa7.86□□□□□ -1.15
VPS53-212ENST00000572259 DDX3YO15523 660 aaKnown RBP7.86□□□□□ -1.15
VPS53-212ENST00000572259 CENPBP07199 599 aaPredicted RBP7.86□□□□□ -1.15
VPS53-212ENST00000572259 PDE3AQ14432 1141 aa7.86□□□□□ -1.15
VPS53-212ENST00000572259 VPS72Q15906 364 aa7.86□□□□□ -1.15
VPS53-212ENST00000572259 DUOXA2Q1HG44 320 aa7.86□□□□□ -1.15
VPS53-212ENST00000572259 HP1BP3Q5SSJ5 553 aaPredicted RBP7.86□□□□□ -1.15
VPS53-212ENST00000572259 MAP1SQ66K74 1059 aaPredicted RBP7.86□□□□□ -1.15
VPS53-212ENST00000572259 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.86□□□□□ -1.15
VPS53-212ENST00000572259 STK35Q8TDR2 534 aa7.86□□□□□ -1.15
VPS53-212ENST00000572259 CPSF1Q10570 1443 aaKnown RBP7.86□□□□□ -1.15
VPS53-212ENST00000572259 COL14A1Q05707 1796 aaKnown RBP7.85□□□□□ -1.15
VPS53-212ENST00000572259 SLIT2O94813 1529 aa7.85□□□□□ -1.15
VPS53-212ENST00000572259 DLL1O00548 723 aa7.85□□□□□ -1.15
VPS53-212ENST00000572259 U2SURPO15042 1029 aaKnown RBP7.85□□□□□ -1.15
VPS53-212ENST00000572259 ELNP15502 786 aa7.85□□□□□ -1.15
VPS53-212ENST00000572259 EIF4A3P38919 411 aaKnown RBP7.85□□□□□ -1.15
VPS53-212ENST00000572259 ARID5AQ03989 594 aa7.85□□□□□ -1.15
VPS53-212ENST00000572259 PLEKHG6Q3KR16 790 aa7.85□□□□□ -1.15
VPS53-212ENST00000572259 FOXD4L6Q3SYB3 417 aaPredicted RBP7.85□□□□□ -1.15
VPS53-212ENST00000572259 SNAP47Q5SQN1 464 aa7.85□□□□□ -1.15
VPS53-212ENST00000572259 FOXD4L3Q6VB84 417 aaPredicted RBP7.85□□□□□ -1.15
VPS53-212ENST00000572259 GRIN3AQ8TCU5 1115 aa7.85□□□□□ -1.15
VPS53-212ENST00000572259 IRF2BPLQ9H1B7 796 aa7.85□□□□□ -1.15
VPS53-212ENST00000572259 MIR1-1HGQ9H1L0 117 aa7.85□□□□□ -1.15
VPS53-212ENST00000572259 ACBD3Q9H3P7 528 aa7.85□□□□□ -1.15
VPS53-212ENST00000572259 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.85□□□□□ -1.15
VPS53-212ENST00000572259 BCL9LQ86UU0 1499 aa7.85□□□□□ -1.15
VPS53-212ENST00000572259 ATRNO75882 1429 aa7.85□□□□□ -1.15
VPS53-212ENST00000572259 EDC4Q6P2E9 1401 aaKnown RBP7.85□□□□□ -1.15
VPS53-212ENST00000572259 KIAA0232Q92628 1395 aa7.84□□□□□ -1.15
VPS53-212ENST00000572259 USP19O94966 1318 aa7.84□□□□□ -1.15
VPS53-212ENST00000572259 ABCA3Q99758 1704 aa7.84□□□□□ -1.15
VPS53-212ENST00000572259 CREB3O43889 395 aa7.84□□□□□ -1.15
VPS53-212ENST00000572259 PF4P02776 101 aa7.84□□□□□ -1.15
VPS53-212ENST00000572259 HSPA5P11021 654 aaKnown RBP7.84□□□□□ -1.15
VPS53-212ENST00000572259 RACK1P63244 317 aaKnown RBP7.84□□□□□ -1.15
VPS53-212ENST00000572259 LMNB2Q03252 620 aa7.84□□□□□ -1.15
VPS53-212ENST00000572259 FAM160A1Q05DH4 1040 aa7.84□□□□□ -1.15
VPS53-212ENST00000572259 CAMK2GQ13555 558 aaPredicted RBP7.84□□□□□ -1.15
VPS53-212ENST00000572259 CHRNA2Q15822 529 aa7.84□□□□□ -1.15
VPS53-212ENST00000572259 NFE2L2Q16236 605 aa7.84□□□□□ -1.15
VPS53-212ENST00000572259 IGF2-ASQ6U949 168 aa7.84□□□□□ -1.15
VPS53-212ENST00000572259 JARID2Q92833 1246 aaPredicted RBP7.84□□□□□ -1.15
VPS53-212ENST00000572259 ACSBG1Q96GR2 724 aa7.84□□□□□ -1.15
VPS53-212ENST00000572259 COG3Q96JB2 828 aa7.84□□□□□ -1.15
VPS53-212ENST00000572259 SPON2Q9BUD6 331 aa7.84□□□□□ -1.15
VPS53-212ENST00000572259 PCDH12Q9NPG4 1184 aa7.84□□□□□ -1.15
VPS53-212ENST00000572259 RAD18Q9NS91 495 aa7.84□□□□□ -1.15
VPS53-212ENST00000572259 KCNK4Q9NYG8 393 aa7.84□□□□□ -1.15
VPS53-212ENST00000572259 CPDO75976 1380 aa7.84□□□□□ -1.16
VPS53-212ENST00000572259 LOC100289279A0A1B0GTE1 492 aa7.83□□□□□ -1.16
VPS53-212ENST00000572259 ADAM11O75078 769 aa7.83□□□□□ -1.16
VPS53-212ENST00000572259 APBA3O96018 575 aa7.83□□□□□ -1.16
VPS53-212ENST00000572259 SPATA31C1P0DKV0 1188 aa7.83□□□□□ -1.16
VPS53-212ENST00000572259 TFE3P19532 575 aaPredicted RBP7.83□□□□□ -1.16
VPS53-212ENST00000572259 ACAD11Q709F0 780 aa7.83□□□□□ -1.16
VPS53-212ENST00000572259 PDZD3Q86UT5 571 aa7.83□□□□□ -1.16
VPS53-212ENST00000572259 KIAA0825Q8IV33 1275 aa7.83□□□□□ -1.16
VPS53-212ENST00000572259 GOLM1Q8NBJ4 401 aa7.83□□□□□ -1.16
VPS53-212ENST00000572259 PMM1Q92871 262 aa7.83□□□□□ -1.16
VPS53-212ENST00000572259 NRSN2Q9GZP1 204 aa7.83□□□□□ -1.16
VPS53-212ENST00000572259 MRPL18Q9H0U6 180 aaKnown RBP7.83□□□□□ -1.16
VPS53-212ENST00000572259 PCDHB5Q9Y5E4 795 aa7.83□□□□□ -1.16
VPS53-212ENST00000572259 SSH2Q76I76 1423 aa7.83□□□□□ -1.16
VPS53-212ENST00000572259 MON2Q7Z3U7 1717 aa7.83□□□□□ -1.16
VPS53-212ENST00000572259 A0A1W2PP64 1363 aa7.83□□□□□ -1.16
VPS53-212ENST00000572259 ANKRD36BQ8N2N9 1353 aa7.83□□□□□ -1.16
VPS53-212ENST00000572259 PLCH1Q4KWH8 1693 aa7.83□□□□□ -1.16
VPS53-212ENST00000572259 PHRF1Q9P1Y6 1649 aaKnown RBP7.82□□□□□ -1.16
VPS53-212ENST00000572259 KAT6BQ8WYB5 2073 aa7.82□□□□□ -1.16
VPS53-212ENST00000572259 TM4SF5O14894 197 aa7.82□□□□□ -1.16
VPS53-212ENST00000572259 TRIM37O94972 964 aa7.82□□□□□ -1.16
VPS53-212ENST00000572259 ECEL1O95672 775 aa7.82□□□□□ -1.16
VPS53-212ENST00000572259 ZNF252P-AS1Q0IIN9 211 aa7.82□□□□□ -1.16
VPS53-212ENST00000572259 BMS1Q14692 1282 aaKnown RBP7.82□□□□□ -1.16
VPS53-212ENST00000572259 GRIK4Q16099 956 aa7.82□□□□□ -1.16
VPS53-212ENST00000572259 EXOSC6Q5RKV6 272 aaKnown RBP7.82□□□□□ -1.16
VPS53-212ENST00000572259 RASIP1Q5U651 963 aa7.82□□□□□ -1.16
VPS53-212ENST00000572259 SCARA3Q6AZY7 606 aa7.82□□□□□ -1.16
VPS53-212ENST00000572259 TRIM42Q8IWZ5 723 aa7.82□□□□□ -1.16
VPS53-212ENST00000572259 UBASH3BQ8TF42 649 aa7.82□□□□□ -1.16
VPS53-212ENST00000572259 ZNF296Q8WUU4 475 aaPredicted RBP7.82□□□□□ -1.16
VPS53-212ENST00000572259 RHOVQ96L33 236 aa7.82□□□□□ -1.16
VPS53-212ENST00000572259 RUSC1Q9BVN2 902 aa7.82□□□□□ -1.16
VPS53-212ENST00000572259 TMX1Q9H3N1 280 aa7.82□□□□□ -1.16
VPS53-212ENST00000572259 KRT82Q9NSB4 513 aa7.82□□□□□ -1.16
VPS53-212ENST00000572259 INPP5FQ9Y2H2 1132 aa7.82□□□□□ -1.16
VPS53-212ENST00000572259 THRAP3Q9Y2W1 955 aaKnown RBP7.82□□□□□ -1.16
VPS53-212ENST00000572259 SUPT16HQ9Y5B9 1047 aaKnown RBP7.82□□□□□ -1.16
VPS53-212ENST00000572259 SPATA31A5Q5VU36 1347 aa7.81□□□□□ -1.16
VPS53-212ENST00000572259 SPATA31A7Q8IWB4 1347 aa7.81□□□□□ -1.16
VPS53-212ENST00000572259 CRYBG1Q9Y4K1 1723 aa7.81□□□□□ -1.16
VPS53-212ENST00000572259 ENPP3O14638 875 aa7.81□□□□□ -1.16
VPS53-212ENST00000572259 STK10O94804 968 aaKnown RBP7.81□□□□□ -1.16
VPS53-212ENST00000572259 S100BP04271 92 aaPredicted RBP7.81□□□□□ -1.16
VPS53-212ENST00000572259 SLFN14P0C7P3 912 aa7.81□□□□□ -1.16
VPS53-212ENST00000572259 LIG1P18858 919 aa7.81□□□□□ -1.16
VPS53-212ENST00000572259 SEPT6Q14141 434 aa7.81□□□□□ -1.16
VPS53-212ENST00000572259 FILIP1Q7Z7B0 1213 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms