RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 TTC14Q96N46 770 aa24.25■■□□□ 1.47
VPS53-210ENST00000571456 FEZ1Q99689 392 aa24.25■■□□□ 1.47
VPS53-210ENST00000571456 MTMR4Q9NYA4 1195 aa24.25■■□□□ 1.47
VPS53-210ENST00000571456 TMOD4Q9NZQ9 345 aa24.25■■□□□ 1.47
VPS53-210ENST00000571456 SLC45A1Q9Y2W3 748 aa24.25■■□□□ 1.47
VPS53-210ENST00000571456 MYH4Q9Y623 1939 aa24.25■■□□□ 1.47
VPS53-210ENST00000571456 ADCY3O60266 1144 aa24.24■■□□□ 1.47
VPS53-210ENST00000571456 LPAR1Q92633 364 aa24.24■■□□□ 1.47
VPS53-210ENST00000571456 MKL1Q969V6 931 aa24.24■■□□□ 1.47
VPS53-210ENST00000571456 DEFB118Q96PH6 123 aa24.24■■□□□ 1.47
VPS53-210ENST00000571456 MTA3Q9BTC8 594 aa24.24■■□□□ 1.47
VPS53-210ENST00000571456 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.24■■□□□ 1.47
VPS53-210ENST00000571456 GABRQQ9UN88 632 aa24.24■■□□□ 1.47
VPS53-210ENST00000571456 TMX2Q9Y320 296 aa24.24■■□□□ 1.47
VPS53-210ENST00000571456 E7EWF7 191 aa24.23■■□□□ 1.47
VPS53-210ENST00000571456 HSPA4P34932 840 aa24.23■■□□□ 1.47
VPS53-210ENST00000571456 NOVP48745 357 aa24.23■■□□□ 1.47
VPS53-210ENST00000571456 KCNB2Q92953 911 aa24.23■■□□□ 1.47
VPS53-210ENST00000571456 PAWRQ96IZ0 340 aaKnown RBP24.23■■□□□ 1.47
VPS53-210ENST00000571456 NEDD4P46934 1319 aa24.23■■□□□ 1.47
VPS53-210ENST00000571456 LAMA2P24043 3122 aaKnown RBP24.22■■□□□ 1.47
VPS53-210ENST00000571456 MTMR2Q13614 643 aa24.22■■□□□ 1.47
VPS53-210ENST00000571456 SHROOM1Q2M3G4 852 aaPredicted RBP24.22■■□□□ 1.47
VPS53-210ENST00000571456 FAM47AQ5JRC9 791 aa24.22■■□□□ 1.47
VPS53-210ENST00000571456 CEP95Q96GE4 821 aa24.22■■□□□ 1.47
VPS53-210ENST00000571456 USP26Q9BXU7 913 aa24.22■■□□□ 1.47
VPS53-210ENST00000571456 GOPCQ9HD26 462 aa24.22■■□□□ 1.47
VPS53-210ENST00000571456 DOCK3Q8IZD9 2030 aa24.22■■□□□ 1.47
VPS53-210ENST00000571456 KDM4AO75164 1064 aa24.21■■□□□ 1.47
VPS53-210ENST00000571456 INHAP05111 366 aa24.21■■□□□ 1.47
VPS53-210ENST00000571456 HMGB1P09429 215 aaKnown RBP24.21■■□□□ 1.47
VPS53-210ENST00000571456 BCRP11274 1271 aa24.21■■□□□ 1.47
VPS53-210ENST00000571456 EEF2P13639 858 aaKnown RBP24.21■■□□□ 1.47
VPS53-210ENST00000571456 SART3Q15020 963 aaKnown RBP24.21■■□□□ 1.47
VPS53-210ENST00000571456 NECAB2Q7Z6G3 386 aa24.21■■□□□ 1.47
VPS53-210ENST00000571456 DGKHQ86XP1 1220 aa24.21■■□□□ 1.47
VPS53-210ENST00000571456 C7orf61Q8IZ16 206 aa24.21■■□□□ 1.47
VPS53-210ENST00000571456 PARK7Q99497 189 aaKnown RBP24.21■■□□□ 1.47
VPS53-210ENST00000571456 CRISPLD2Q9H0B8 497 aa24.21■■□□□ 1.47
VPS53-210ENST00000571456 FRMD4AQ9P2Q2 1039 aaPredicted RBP24.21■■□□□ 1.47
VPS53-210ENST00000571456 ZMYND8Q9ULU4 1186 aaPredicted RBP24.21■■□□□ 1.47
VPS53-210ENST00000571456 AGTPBP1Q9UPW5 1226 aa24.21■■□□□ 1.47
VPS53-210ENST00000571456 TACC3Q9Y6A5 838 aa24.21■■□□□ 1.47
VPS53-210ENST00000571456 B4E1Z4 1266 aa24.2■■□□□ 1.46
VPS53-210ENST00000571456 ELNP15502 786 aa24.2■■□□□ 1.46
VPS53-210ENST00000571456 HMGCS2P54868 508 aa24.2■■□□□ 1.46
VPS53-210ENST00000571456 CCDC84Q86UT8 332 aaPredicted RBP24.2■■□□□ 1.46
VPS53-210ENST00000571456 TDHQ8IZJ6 230 aa24.2■■□□□ 1.46
VPS53-210ENST00000571456 PXYLP1Q8TE99 480 aa24.2■■□□□ 1.46
VPS53-210ENST00000571456 UBAC1Q9BSL1 405 aa24.2■■□□□ 1.46
VPS53-210ENST00000571456 INCENPQ9NQS7 918 aa24.2■■□□□ 1.46
VPS53-210ENST00000571456 PAK6Q9NQU5 681 aaPredicted RBP24.2■■□□□ 1.46
VPS53-210ENST00000571456 PNMA3Q9UL41 463 aa24.2■■□□□ 1.46
VPS53-210ENST00000571456 C8orf34Q49A92 452 aa24.19■■□□□ 1.46
VPS53-210ENST00000571456 SIAH1Q8IUQ4 282 aa24.19■■□□□ 1.46
VPS53-210ENST00000571456 ACER1Q8TDN7 264 aa24.19■■□□□ 1.46
VPS53-210ENST00000571456 VCPKMTQ9H867 229 aa24.19■■□□□ 1.46
VPS53-210ENST00000571456 ZSWIM5Q9P217 1185 aa24.19■■□□□ 1.46
VPS53-210ENST00000571456 STX8Q9UNK0 236 aa24.19■■□□□ 1.46
VPS53-210ENST00000571456 TTC28Q96AY4 2481 aa24.19■■□□□ 1.46
VPS53-210ENST00000571456 WDR19Q8NEZ3 1342 aa24.18■■□□□ 1.46
VPS53-210ENST00000571456 ERICH2A1L162 156 aa24.18■■□□□ 1.46
VPS53-210ENST00000571456 HOXA7P31268 230 aaPredicted RBP24.18■■□□□ 1.46
VPS53-210ENST00000571456 FLT3LGP49771 235 aa24.18■■□□□ 1.46
VPS53-210ENST00000571456 MOGSQ13724 837 aa24.18■■□□□ 1.46
VPS53-210ENST00000571456 GADL1Q6ZQY3 521 aa24.18■■□□□ 1.46
VPS53-210ENST00000571456 GMCL1P1Q8NEA9 526 aa24.18■■□□□ 1.46
VPS53-210ENST00000571456 DIS3LQ8TF46 1054 aaKnown RBP24.18■■□□□ 1.46
VPS53-210ENST00000571456 ANKS1AQ92625 1134 aa24.18■■□□□ 1.46
VPS53-210ENST00000571456 IL17RBQ9NRM6 502 aa24.18■■□□□ 1.46
VPS53-210ENST00000571456 CLIP2Q9UDT6 1046 aa24.18■■□□□ 1.46
VPS53-210ENST00000571456 SPTBN5Q9NRC6 3674 aaKnown RBP24.17■■□□□ 1.46
VPS53-210ENST00000571456 A0A1W2PRG0 241 aa24.17■■□□□ 1.46
VPS53-210ENST00000571456 TOP1P11387 765 aaKnown RBP24.17■■□□□ 1.46
VPS53-210ENST00000571456 MCM5P33992 734 aa24.17■■□□□ 1.46
VPS53-210ENST00000571456 ANAPC15P60006 121 aa24.17■■□□□ 1.46
VPS53-210ENST00000571456 ATP2B2Q01814 1243 aa24.17■■□□□ 1.46
VPS53-210ENST00000571456 ZSCAN10Q96SZ4 725 aaPredicted RBP24.17■■□□□ 1.46
VPS53-210ENST00000571456 EMILIN3Q9NT22 766 aa24.17■■□□□ 1.46
VPS53-210ENST00000571456 EYSQ5T1H1 3165 aa24.16■■□□□ 1.46
VPS53-210ENST00000571456 WDR46O15213 610 aaKnown RBP24.16■■□□□ 1.46
VPS53-210ENST00000571456 PSMA5P28066 241 aa24.16■■□□□ 1.46
VPS53-210ENST00000571456 MAGEA10P43363 369 aaPredicted RBP24.16■■□□□ 1.46
VPS53-210ENST00000571456 IRF5Q13568 498 aa24.16■■□□□ 1.46
VPS53-210ENST00000571456 STOX1Q6ZVD7 989 aa24.16■■□□□ 1.46
VPS53-210ENST00000571456 MB21D2Q8IYB1 491 aaPredicted RBP24.16■■□□□ 1.46
VPS53-210ENST00000571456 NEK1Q96PY6 1258 aa24.16■■□□□ 1.46
VPS53-210ENST00000571456 CYP2C8P10632 490 aa24.15■■□□□ 1.46
VPS53-210ENST00000571456 GPAT2Q6NUI2 795 aa24.15■■□□□ 1.46
VPS53-210ENST00000571456 TMTC2Q8N394 836 aa24.15■■□□□ 1.46
VPS53-210ENST00000571456 GTF3C2Q8WUA4 911 aaPredicted RBP24.15■■□□□ 1.46
VPS53-210ENST00000571456 TMEM87BQ96K49 555 aa24.15■■□□□ 1.46
VPS53-210ENST00000571456 PRUNE2Q8WUY3 3088 aa24.15■■□□□ 1.46
VPS53-210ENST00000571456 RPTORQ8N122 1335 aa24.14■■□□□ 1.46
VPS53-210ENST00000571456 USP17L15C9J2P7 530 aa24.14■■□□□ 1.45
VPS53-210ENST00000571456 USP17L13C9JLJ4 530 aa24.14■■□□□ 1.45
VPS53-210ENST00000571456 USP17L11C9JVI0 530 aa24.14■■□□□ 1.45
VPS53-210ENST00000571456 USP17L18D6R9N7 530 aa24.14■■□□□ 1.45
VPS53-210ENST00000571456 USP17L22D6RA61 530 aa24.14■■□□□ 1.45
VPS53-210ENST00000571456 USP17L17D6RBQ6 530 aa24.14■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms