RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 F6X3S4 739 aa7.32□□□□□ -1.24
VPS53-208ENST00000570650 CTNND1O60716 968 aaKnown RBP7.32□□□□□ -1.24
VPS53-208ENST00000570650 BMP1P13497 986 aa7.32□□□□□ -1.24
VPS53-208ENST00000570650 ZEB1P37275 1124 aaPredicted RBP7.32□□□□□ -1.24
VPS53-208ENST00000570650 TREML2Q5T2D2 321 aa7.32□□□□□ -1.24
VPS53-208ENST00000570650 ZNF787Q6DD87 383 aa7.32□□□□□ -1.24
VPS53-208ENST00000570650 ITPKCQ96DU7 683 aa7.32□□□□□ -1.24
VPS53-208ENST00000570650 SEMA6BQ9H3T3 888 aa7.32□□□□□ -1.24
VPS53-208ENST00000570650 ATP13A2Q9NQ11 1180 aa7.32□□□□□ -1.24
VPS53-208ENST00000570650 USP40Q9NVE5 1235 aa7.32□□□□□ -1.24
VPS53-208ENST00000570650 C9orf78Q9NZ63 289 aaPredicted RBP7.32□□□□□ -1.24
VPS53-208ENST00000570650 GMPR2Q9P2T1 348 aaKnown RBP7.32□□□□□ -1.24
VPS53-208ENST00000570650 CACNA1FO60840 1977 aa7.31□□□□□ -1.24
VPS53-208ENST00000570650 VCANP13611 3396 aa7.31□□□□□ -1.24
VPS53-208ENST00000570650 KIF16BQ96L93 1317 aa7.31□□□□□ -1.24
VPS53-208ENST00000570650 ENTPD3O75355 529 aa7.31□□□□□ -1.24
VPS53-208ENST00000570650 PDE8BO95263 885 aa7.31□□□□□ -1.24
VPS53-208ENST00000570650 ZIC2O95409 532 aaPredicted RBP7.31□□□□□ -1.24
VPS53-208ENST00000570650 IFIT1P09914 478 aaKnown RBP7.31□□□□□ -1.24
VPS53-208ENST00000570650 CYP2B6P20813 491 aa7.31□□□□□ -1.24
VPS53-208ENST00000570650 MAP3K10Q02779 954 aa7.31□□□□□ -1.24
VPS53-208ENST00000570650 NR1H3Q13133 447 aa7.31□□□□□ -1.24
VPS53-208ENST00000570650 PABPC4Q13310 644 aaKnown RBP eCLIP7.31□□□□□ -1.24
VPS53-208ENST00000570650 LRRC24Q50LG9 513 aa7.31□□□□□ -1.24
VPS53-208ENST00000570650 INTS6LQ5JSJ4 861 aaKnown RBP7.31□□□□□ -1.24
VPS53-208ENST00000570650 TRIM46Q7Z4K8 759 aa7.31□□□□□ -1.24
VPS53-208ENST00000570650 ZSCAN29Q8IWY8 852 aaPredicted RBP7.31□□□□□ -1.24
VPS53-208ENST00000570650 ZFPM1Q8IX07 1006 aa7.31□□□□□ -1.24
VPS53-208ENST00000570650 CCDC116Q8IYX3 515 aa7.31□□□□□ -1.24
VPS53-208ENST00000570650 VGLL2Q8N8G2 317 aa7.31□□□□□ -1.24
VPS53-208ENST00000570650 SOCS4Q8WXH5 440 aa7.31□□□□□ -1.24
VPS53-208ENST00000570650 MYLIPQ8WY64 445 aa7.31□□□□□ -1.24
VPS53-208ENST00000570650 SUCLG2Q96I99 432 aa7.31□□□□□ -1.24
VPS53-208ENST00000570650 GDPD2Q9HCC8 539 aa7.31□□□□□ -1.24
VPS53-208ENST00000570650 CDV3Q9UKY7 258 aaKnown RBP7.31□□□□□ -1.24
VPS53-208ENST00000570650 DOCK2Q92608 1830 aa7.31□□□□□ -1.24
VPS53-208ENST00000570650 DOCK1Q14185 1865 aa7.3□□□□□ -1.24
VPS53-208ENST00000570650 PHIPQ8WWQ0 1821 aa7.3□□□□□ -1.24
VPS53-208ENST00000570650 ALDH1L1O75891 902 aa7.3□□□□□ -1.24
VPS53-208ENST00000570650 XRCC5P13010 732 aaKnown RBP7.3□□□□□ -1.24
VPS53-208ENST00000570650 FOSL2P15408 326 aa7.3□□□□□ -1.24
VPS53-208ENST00000570650 PRDX5P30044 214 aa7.3□□□□□ -1.24
VPS53-208ENST00000570650 RGS3P49796 1198 aa7.3□□□□□ -1.24
VPS53-208ENST00000570650 PUM3Q15397 648 aaKnown RBP7.3□□□□□ -1.24
VPS53-208ENST00000570650 CCDC84Q86UT8 332 aaPredicted RBP7.3□□□□□ -1.24
VPS53-208ENST00000570650 IDI2Q9BXS1 227 aa7.3□□□□□ -1.24
VPS53-208ENST00000570650 ASCC2Q9H1I8 757 aaPredicted RBP7.3□□□□□ -1.24
VPS53-208ENST00000570650 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.3□□□□□ -1.24
VPS53-208ENST00000570650 MORF4L1Q9UBU8 362 aa7.3□□□□□ -1.24
VPS53-208ENST00000570650 PRKAG2Q9UGJ0 569 aa7.3□□□□□ -1.24
VPS53-208ENST00000570650 PCDHB9Q9Y5E1 797 aa7.3□□□□□ -1.24
VPS53-208ENST00000570650 LDHBP07195 334 aaKnown RBP7.29□□□□□ -1.24
VPS53-208ENST00000570650 SLC5A1P13866 664 aa7.29□□□□□ -1.24
VPS53-208ENST00000570650 ZKSCAN1P17029 563 aaPredicted RBP7.29□□□□□ -1.24
VPS53-208ENST00000570650 FGFR2P21802 821 aa7.29□□□□□ -1.24
VPS53-208ENST00000570650 CCND3P30281 292 aaPredicted RBP7.29□□□□□ -1.24
VPS53-208ENST00000570650 PLA2G5P39877 138 aa7.29□□□□□ -1.24
VPS53-208ENST00000570650 RAB15P59190 212 aa7.29□□□□□ -1.24
VPS53-208ENST00000570650 SMAD3P84022 425 aaKnown RBP7.29□□□□□ -1.24
VPS53-208ENST00000570650 CACNB2Q08289 660 aaPredicted RBP7.29□□□□□ -1.24
VPS53-208ENST00000570650 SPP2Q13103 211 aa7.29□□□□□ -1.24
VPS53-208ENST00000570650 SHHQ15465 462 aa7.29□□□□□ -1.24
VPS53-208ENST00000570650 RABL6Q3YEC7 729 aaPredicted RBP7.29□□□□□ -1.24
VPS53-208ENST00000570650 PPP1R26Q5T8A7 1209 aaPredicted RBP7.29□□□□□ -1.24
VPS53-208ENST00000570650 ZNF280CQ8ND82 737 aa7.29□□□□□ -1.24
VPS53-208ENST00000570650 KAZALD1Q96I82 304 aa7.29□□□□□ -1.24
VPS53-208ENST00000570650 SENP6Q9GZR1 1112 aaPredicted RBP7.29□□□□□ -1.24
VPS53-208ENST00000570650 TTYH1Q9H313 450 aaPredicted RBP7.29□□□□□ -1.24
VPS53-208ENST00000570650 RAPGEFL1Q9UHV5 662 aa7.29□□□□□ -1.24
VPS53-208ENST00000570650 PLXNB2O15031 1838 aa7.29□□□□□ -1.24
VPS53-208ENST00000570650 IL16Q14005 1332 aa7.28□□□□□ -1.24
VPS53-208ENST00000570650 TMEM265A0A087WTH1 108 aa7.28□□□□□ -1.24
VPS53-208ENST00000570650 DDTLA6NHG4 134 aaPredicted RBP7.28□□□□□ -1.24
VPS53-208ENST00000570650 VAMP4O75379 141 aa7.28□□□□□ -1.24
VPS53-208ENST00000570650 SLURP2P0DP57 97 aa7.28□□□□□ -1.24
VPS53-208ENST00000570650 ABL2P42684 1182 aa7.28□□□□□ -1.24
VPS53-208ENST00000570650 HMGCS2P54868 508 aa7.28□□□□□ -1.24
VPS53-208ENST00000570650 IRX3P78415 501 aaPredicted RBP7.28□□□□□ -1.24
VPS53-208ENST00000570650 PDE3AQ14432 1141 aa7.28□□□□□ -1.24
VPS53-208ENST00000570650 CCDC27Q2M243 656 aa7.28□□□□□ -1.24
VPS53-208ENST00000570650 NBPF20Q3BBV1 942 aa7.28□□□□□ -1.24
VPS53-208ENST00000570650 SLC4A10Q6U841 1118 aa7.28□□□□□ -1.24
VPS53-208ENST00000570650 WWC1Q8IX03 1113 aa7.28□□□□□ -1.24
VPS53-208ENST00000570650 LPIN2Q92539 896 aa7.28□□□□□ -1.24
VPS53-208ENST00000570650 FAM122AQ96E09 287 aa7.28□□□□□ -1.24
VPS53-208ENST00000570650 SRCIN1Q9C0H9 1055 aa7.28□□□□□ -1.24
VPS53-208ENST00000570650 OSBPL5Q9H0X9 879 aaPredicted RBP7.28□□□□□ -1.24
VPS53-208ENST00000570650 BICC1Q9H694 974 aaKnown RBP7.28□□□□□ -1.24
VPS53-208ENST00000570650 RFX7Q2KHR2 1363 aa7.28□□□□□ -1.24
VPS53-208ENST00000570650 MYH13Q9UKX3 1938 aa7.28□□□□□ -1.24
VPS53-208ENST00000570650 LOC285556D6RIA3 1793 aa7.28□□□□□ -1.24
VPS53-208ENST00000570650 MAST2Q6P0Q8 1798 aa7.28□□□□□ -1.24
VPS53-208ENST00000570650 UTYO14607 1347 aa7.27□□□□□ -1.24
VPS53-208ENST00000570650 GAKO14976 1311 aa7.27□□□□□ -1.24
VPS53-208ENST00000570650 SALL1Q9NSC2 1324 aa7.27□□□□□ -1.24
VPS53-208ENST00000570650 TTC28Q96AY4 2481 aa7.27□□□□□ -1.24
VPS53-208ENST00000570650 ESPNB1AK53 854 aa7.27□□□□□ -1.25
VPS53-208ENST00000570650 NBPF7P0C2Y1 421 aaPredicted RBP7.27□□□□□ -1.25
VPS53-208ENST00000570650 MAPK4P31152 587 aa7.27□□□□□ -1.25
VPS53-208ENST00000570650 RGS2P41220 211 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms