RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 KCNQ1P51787 676 aa13.5□□□□□ -0.25
VPS53-207ENST00000570510 DYNLL1P63167 89 aaKnown RBP13.5□□□□□ -0.25
VPS53-207ENST00000570510 KCNA10Q16322 511 aa13.5□□□□□ -0.25
VPS53-207ENST00000570510 PPP2R2DQ66LE6 453 aa13.5□□□□□ -0.25
VPS53-207ENST00000570510 ALYREFQ86V81 257 aaKnown RBP13.5□□□□□ -0.25
VPS53-207ENST00000570510 EHD4Q9H223 541 aa13.5□□□□□ -0.25
VPS53-207ENST00000570510 EPHX3Q9H6B9 360 aa13.5□□□□□ -0.25
VPS53-207ENST00000570510 BDP1A6H8Y1 2624 aa13.5□□□□□ -0.25
VPS53-207ENST00000570510 SEPT2Q15019 361 aa13.49□□□□□ -0.25
VPS53-207ENST00000570510 C16orf59Q7L2K0 433 aa13.49□□□□□ -0.25
VPS53-207ENST00000570510 ADGRA1Q86SQ6 560 aa13.49□□□□□ -0.25
VPS53-207ENST00000570510 FAM9BQ8IZU0 186 aa13.49□□□□□ -0.25
VPS53-207ENST00000570510 MIGA1Q8NAN2 632 aa13.49□□□□□ -0.25
VPS53-207ENST00000570510 PCSK9Q8NBP7 692 aaKnown RBP13.49□□□□□ -0.25
VPS53-207ENST00000570510 CDCA7LQ96GN5 454 aa13.49□□□□□ -0.25
VPS53-207ENST00000570510 TBX21Q9UL17 535 aa13.49□□□□□ -0.25
VPS53-207ENST00000570510 FAM184BQ9ULE4 1060 aa13.49□□□□□ -0.25
VPS53-207ENST00000570510 MYO9BQ13459 2157 aa13.49□□□□□ -0.25
VPS53-207ENST00000570510 ZNF521Q96K83 1311 aa13.48□□□□□ -0.25
VPS53-207ENST00000570510 IDH1O75874 414 aaKnown RBP13.48□□□□□ -0.25
VPS53-207ENST00000570510 GNAI3P08754 354 aa13.48□□□□□ -0.25
VPS53-207ENST00000570510 C6orf222P0C671 652 aaPredicted RBP13.48□□□□□ -0.25
VPS53-207ENST00000570510 TAL1P17542 331 aaPredicted RBP13.48□□□□□ -0.25
VPS53-207ENST00000570510 DSG3P32926 999 aa13.48□□□□□ -0.25
VPS53-207ENST00000570510 ALDH1L2Q3SY69 923 aa13.48□□□□□ -0.25
VPS53-207ENST00000570510 LENG1Q96BZ8 264 aaPredicted RBP13.48□□□□□ -0.25
VPS53-207ENST00000570510 MEIS3Q99687 375 aa13.48□□□□□ -0.25
VPS53-207ENST00000570510 IL23AQ9NPF7 189 aa13.48□□□□□ -0.25
VPS53-207ENST00000570510 ELP1O95163 1332 aa13.47□□□□□ -0.25
VPS53-207ENST00000570510 SYNRGQ9UMZ2 1314 aa13.47□□□□□ -0.25
VPS53-207ENST00000570510 A0A0U1RQG5 324 aaPredicted RBP13.47□□□□□ -0.25
VPS53-207ENST00000570510 ZBBXA8MT70 800 aa13.47□□□□□ -0.25
VPS53-207ENST00000570510 ERC2O15083 957 aa13.47□□□□□ -0.25
VPS53-207ENST00000570510 IGSF3O75054 1194 aa13.47□□□□□ -0.25
VPS53-207ENST00000570510 OS9Q13438 667 aaPredicted RBP13.47□□□□□ -0.25
VPS53-207ENST00000570510 RASIP1Q5U651 963 aa13.47□□□□□ -0.25
VPS53-207ENST00000570510 OTOP2Q7RTS6 562 aa13.47□□□□□ -0.25
VPS53-207ENST00000570510 SPICE1Q8N0Z3 855 aa13.47□□□□□ -0.25
VPS53-207ENST00000570510 ATG4CQ96DT6 458 aa13.47□□□□□ -0.25
VPS53-207ENST00000570510 API5Q9BZZ5 524 aaKnown RBP13.47□□□□□ -0.25
VPS53-207ENST00000570510 SH2D4AQ9H788 454 aa13.47□□□□□ -0.25
VPS53-207ENST00000570510 ARHGEF10LQ9HCE6 1279 aa13.47□□□□□ -0.25
VPS53-207ENST00000570510 ZHX1Q9UKY1 873 aaPredicted RBP13.47□□□□□ -0.25
VPS53-207ENST00000570510 DIS3Q9Y2L1 958 aaKnown RBP13.47□□□□□ -0.25
VPS53-207ENST00000570510 SLC4A7Q9Y6M7 1214 aa13.47□□□□□ -0.25
VPS53-207ENST00000570510 PLXNA1Q9UIW2 1896 aa13.46□□□□□ -0.25
VPS53-207ENST00000570510 SIPA1L1O43166 1804 aa13.46□□□□□ -0.25
VPS53-207ENST00000570510 TCF20Q9UGU0 1960 aaKnown RBP13.46□□□□□ -0.25
VPS53-207ENST00000570510 ADAMTS4O75173 837 aa13.46□□□□□ -0.25
VPS53-207ENST00000570510 CYP2E1P05181 493 aaPredicted RBP13.46□□□□□ -0.25
VPS53-207ENST00000570510 ZNF865P0CJ78 1059 aaPredicted RBP13.46□□□□□ -0.25
VPS53-207ENST00000570510 CYP2C18P33260 490 aa13.46□□□□□ -0.25
VPS53-207ENST00000570510 DDX11Q96FC9 970 aa13.46□□□□□ -0.25
VPS53-207ENST00000570510 NOB1Q9ULX3 412 aaKnown RBP13.46□□□□□ -0.25
VPS53-207ENST00000570510 COG5Q9UP83 839 aa13.46□□□□□ -0.25
VPS53-207ENST00000570510 YBX2Q9Y2T7 364 aaKnown RBP13.46□□□□□ -0.25
VPS53-207ENST00000570510 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.46□□□□□ -0.25
VPS53-207ENST00000570510 ZNF236Q9UL36 1845 aa13.46□□□□□ -0.26
VPS53-207ENST00000570510 FAM86C2PA6NEL3 165 aa13.45□□□□□ -0.26
VPS53-207ENST00000570510 E9PSI1 815 aa13.45□□□□□ -0.26
VPS53-207ENST00000570510 ARVCFO00192 962 aa13.45□□□□□ -0.26
VPS53-207ENST00000570510 RAD21O60216 631 aa13.45□□□□□ -0.26
VPS53-207ENST00000570510 GPR37L1O60883 481 aa13.45□□□□□ -0.26
VPS53-207ENST00000570510 ASGR1P07306 291 aa13.45□□□□□ -0.26
VPS53-207ENST00000570510 SHMT1P34896 483 aa13.45□□□□□ -0.26
VPS53-207ENST00000570510 COPB2P35606 906 aa13.45□□□□□ -0.26
VPS53-207ENST00000570510 ZAP70P43403 619 aa13.45□□□□□ -0.26
VPS53-207ENST00000570510 RABGGTBP53611 331 aa13.45□□□□□ -0.26
VPS53-207ENST00000570510 GNASQ5JWF2 1037 aa13.45□□□□□ -0.26
VPS53-207ENST00000570510 HIPK3Q9H422 1215 aa13.45□□□□□ -0.26
VPS53-207ENST00000570510 A0A1W2PRG0 241 aa13.44□□□□□ -0.26
VPS53-207ENST00000570510 DUSP11O75319 330 aaKnown RBP13.44□□□□□ -0.26
VPS53-207ENST00000570510 STAT3P40763 770 aa13.44□□□□□ -0.26
VPS53-207ENST00000570510 PLCD1P51178 756 aa13.44□□□□□ -0.26
VPS53-207ENST00000570510 TMEM132BQ14DG7 1078 aa13.44□□□□□ -0.26
VPS53-207ENST00000570510 ZNF792Q3KQV3 632 aa13.44□□□□□ -0.26
VPS53-207ENST00000570510 TMEM179Q6ZVK1 233 aa13.44□□□□□ -0.26
VPS53-207ENST00000570510 RPUSD2Q8IZ73 545 aaKnown RBP13.44□□□□□ -0.26
VPS53-207ENST00000570510 MAGEB6Q8N7X4 407 aa13.44□□□□□ -0.26
VPS53-207ENST00000570510 KLHDC9Q8NEP7 349 aa13.44□□□□□ -0.26
VPS53-207ENST00000570510 HLA-CQ95604 372 aa13.44□□□□□ -0.26
VPS53-207ENST00000570510 UIMC1Q96RL1 719 aa13.44□□□□□ -0.26
VPS53-207ENST00000570510 PCDHA11Q9Y5I1 949 aa13.44□□□□□ -0.26
VPS53-207ENST00000570510 ROBO3Q96MS0 1386 aa13.44□□□□□ -0.26
VPS53-207ENST00000570510 ATP2A2P16615 1042 aaKnown RBP13.43□□□□□ -0.26
VPS53-207ENST00000570510 GUCY1A2P33402 732 aa13.43□□□□□ -0.26
VPS53-207ENST00000570510 SLC4A3P48751 1232 aa13.43□□□□□ -0.26
VPS53-207ENST00000570510 CDK7P50613 346 aa13.43□□□□□ -0.26
VPS53-207ENST00000570510 NOL8Q76FK4 1167 aaKnown RBP13.43□□□□□ -0.26
VPS53-207ENST00000570510 RIOX2Q8IUF8 465 aa13.43□□□□□ -0.26
VPS53-207ENST00000570510 MSL3Q8N5Y2 521 aaKnown RBP13.43□□□□□ -0.26
VPS53-207ENST00000570510 DBNDD2Q9BQY9 259 aa13.43□□□□□ -0.26
VPS53-207ENST00000570510 PIH1D3Q9NQM4 214 aaKnown RBP13.43□□□□□ -0.26
VPS53-207ENST00000570510 MCM9Q9NXL9 1143 aa13.43□□□□□ -0.26
VPS53-207ENST00000570510 CTDP1Q9Y5B0 961 aaPredicted RBP13.43□□□□□ -0.26
VPS53-207ENST00000570510 XIRP2A4UGR9 3374 aa13.43□□□□□ -0.26
VPS53-207ENST00000570510 SMCHD1A6NHR9 2005 aa13.42□□□□□ -0.26
VPS53-207ENST00000570510 SMIM22K7EJ46 135 aa13.42□□□□□ -0.26
VPS53-207ENST00000570510 WDR46O15213 610 aaKnown RBP13.42□□□□□ -0.26
VPS53-207ENST00000570510 MYOGP15173 224 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms