RNA–Protein interactions for RNA: ENST00000569827.5

CAPN3-220, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 908 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-220ENST00000569827 SHCBP1Q8NEM2 672 aa14.58□□□□□ -0.08
CAPN3-220ENST00000569827 VCPKMTQ9H867 229 aa14.58□□□□□ -0.08
CAPN3-220ENST00000569827 PDLIM7Q9NR12 457 aa14.58□□□□□ -0.08
CAPN3-220ENST00000569827 TRIM43BA6NCK2 446 aa14.57□□□□□ -0.08
CAPN3-220ENST00000569827 PGK1P00558 417 aa14.57□□□□□ -0.08
CAPN3-220ENST00000569827 ITGB8P26012 769 aa14.57□□□□□ -0.08
CAPN3-220ENST00000569827 ADD2P35612 726 aa14.57□□□□□ -0.08
CAPN3-220ENST00000569827 CDK8P49336 464 aa14.57□□□□□ -0.08
CAPN3-220ENST00000569827 ZNF697Q5TEC3 545 aa14.57□□□□□ -0.08
CAPN3-220ENST00000569827 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.57□□□□□ -0.08
CAPN3-220ENST00000569827 CLASRPQ8N2M8 674 aaKnown RBP14.57□□□□□ -0.08
CAPN3-220ENST00000569827 TRIM43Q96BQ3 446 aaPredicted RBP14.57□□□□□ -0.08
CAPN3-220ENST00000569827 ARHGEF10LQ9HCE6 1279 aa14.57□□□□□ -0.08
CAPN3-220ENST00000569827 PAG1Q9NWQ8 432 aa14.57□□□□□ -0.08
CAPN3-220ENST00000569827 COG6Q9Y2V7 657 aa14.57□□□□□ -0.08
CAPN3-220ENST00000569827 TMX2Q9Y320 296 aa14.57□□□□□ -0.08
CAPN3-220ENST00000569827 USP17L12C9JPN9 530 aa14.56□□□□□ -0.08
CAPN3-220ENST00000569827 USP17L21D6R901 530 aa14.56□□□□□ -0.08
CAPN3-220ENST00000569827 STRNO43815 780 aa14.56□□□□□ -0.08
CAPN3-220ENST00000569827 EEF2P13639 858 aaKnown RBP14.56□□□□□ -0.08
CAPN3-220ENST00000569827 KIF1BPQ96EK5 621 aa14.56□□□□□ -0.08
CAPN3-220ENST00000569827 MMP19Q99542 508 aa14.56□□□□□ -0.08
CAPN3-220ENST00000569827 NUP88Q99567 741 aaPredicted RBP14.56□□□□□ -0.08
CAPN3-220ENST00000569827 SWAP70Q9UH65 585 aa14.56□□□□□ -0.08
CAPN3-220ENST00000569827 WDR46O15213 610 aaKnown RBP14.55□□□□□ -0.08
CAPN3-220ENST00000569827 FCER1AP12319 257 aa14.55□□□□□ -0.08
CAPN3-220ENST00000569827 TLE2Q04725 743 aa14.55□□□□□ -0.08
CAPN3-220ENST00000569827 HSP90AB4PQ58FF6 505 aa14.55□□□□□ -0.08
CAPN3-220ENST00000569827 FAM83BQ5T0W9 1011 aa14.55□□□□□ -0.08
CAPN3-220ENST00000569827 C12orf60Q5U649 245 aa14.55□□□□□ -0.08
CAPN3-220ENST00000569827 MIER1Q8N108 512 aa14.55□□□□□ -0.08
CAPN3-220ENST00000569827 MB21D1Q8N884 522 aa14.55□□□□□ -0.08
CAPN3-220ENST00000569827 MYLIPQ8WY64 445 aa14.55□□□□□ -0.08
CAPN3-220ENST00000569827 CDX2Q99626 313 aaPredicted RBP14.55□□□□□ -0.08
CAPN3-220ENST00000569827 MROH8Q9H579 483 aa14.55□□□□□ -0.08
CAPN3-220ENST00000569827 TTC28Q96AY4 2481 aa14.55□□□□□ -0.08
CAPN3-220ENST00000569827 SMARCA5O60264 1052 aaPredicted RBP14.54□□□□□ -0.08
CAPN3-220ENST00000569827 SLC4A3P48751 1232 aa14.54□□□□□ -0.08
CAPN3-220ENST00000569827 EPHB4P54760 987 aa14.54□□□□□ -0.08
CAPN3-220ENST00000569827 IRX5P78411 483 aaPredicted RBP14.54□□□□□ -0.08
CAPN3-220ENST00000569827 SNX17Q15036 470 aa14.54□□□□□ -0.08
CAPN3-220ENST00000569827 FAM109BQ6ICB4 259 aaPredicted RBP14.54□□□□□ -0.08
CAPN3-220ENST00000569827 C16orf86Q6ZW13 317 aa14.54□□□□□ -0.08
CAPN3-220ENST00000569827 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.54□□□□□ -0.08
CAPN3-220ENST00000569827 TTYH1Q9H313 450 aaPredicted RBP14.54□□□□□ -0.08
CAPN3-220ENST00000569827 XPNPEP3Q9NQH7 507 aa14.54□□□□□ -0.08
CAPN3-220ENST00000569827 SLC4A4Q9Y6R1 1079 aa14.54□□□□□ -0.08
CAPN3-220ENST00000569827 LCTP09848 1927 aa14.54□□□□□ -0.08
CAPN3-220ENST00000569827 LRRC37A2A6NM11 1700 aa14.53□□□□□ -0.08
CAPN3-220ENST00000569827 PQBP1O60828 265 aaKnown RBP14.53□□□□□ -0.08
CAPN3-220ENST00000569827 TMED8Q6PL24 325 aaPredicted RBP14.53□□□□□ -0.08
CAPN3-220ENST00000569827 RIOX2Q8IUF8 465 aa14.53□□□□□ -0.08
CAPN3-220ENST00000569827 PUS7LQ9H0K6 701 aaKnown RBP14.53□□□□□ -0.08
CAPN3-220ENST00000569827 ATP8A2Q9NTI2 1148 aa14.53□□□□□ -0.08
CAPN3-220ENST00000569827 SLC5A4Q9NY91 659 aa14.53□□□□□ -0.08
CAPN3-220ENST00000569827 VWA5AO00534 786 aa14.52□□□□□ -0.09
CAPN3-220ENST00000569827 RARBP10826 455 aa14.52□□□□□ -0.09
CAPN3-220ENST00000569827 ZNF792Q3KQV3 632 aa14.52□□□□□ -0.09
CAPN3-220ENST00000569827 CTR9Q6PD62 1173 aa14.52□□□□□ -0.09
CAPN3-220ENST00000569827 ABRAQ8N0Z2 381 aa14.52□□□□□ -0.09
CAPN3-220ENST00000569827 REPS2Q8NFH8 660 aa14.52□□□□□ -0.09
CAPN3-220ENST00000569827 MAFAQ8NHW3 353 aaPredicted RBP14.52□□□□□ -0.09
CAPN3-220ENST00000569827 HAUS7Q99871 368 aa14.52□□□□□ -0.09
CAPN3-220ENST00000569827 TINF2Q9BSI4 451 aa14.52□□□□□ -0.09
CAPN3-220ENST00000569827 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.52□□□□□ -0.09
CAPN3-220ENST00000569827 SEMA6BQ9H3T3 888 aa14.52□□□□□ -0.09
CAPN3-220ENST00000569827 SH2D4AQ9H788 454 aa14.52□□□□□ -0.09
CAPN3-220ENST00000569827 ZNF214Q9UL59 606 aaPredicted RBP14.52□□□□□ -0.09
CAPN3-220ENST00000569827 PPP1R9AQ9ULJ8 1098 aa14.52□□□□□ -0.09
CAPN3-220ENST00000569827 PHF24Q9UPV7 400 aa14.52□□□□□ -0.09
CAPN3-220ENST00000569827 ZBED9Q6R2W3 1325 aa14.51□□□□□ -0.09
CAPN3-220ENST00000569827 A0A1W2PQ45 241 aaPredicted RBP14.51□□□□□ -0.09
CAPN3-220ENST00000569827 A0A1W2PQY0 241 aa14.51□□□□□ -0.09
CAPN3-220ENST00000569827 MYADML2A6NDP7 307 aa14.51□□□□□ -0.09
CAPN3-220ENST00000569827 HMMRO75330 724 aa14.51□□□□□ -0.09
CAPN3-220ENST00000569827 CLTBP09497 229 aa14.51□□□□□ -0.09
CAPN3-220ENST00000569827 ZNF865P0CJ78 1059 aaPredicted RBP14.51□□□□□ -0.09
CAPN3-220ENST00000569827 ATP5JP18859 108 aa14.51□□□□□ -0.09
CAPN3-220ENST00000569827 STAT3P40763 770 aa14.51□□□□□ -0.09
CAPN3-220ENST00000569827 KCTD2Q14681 263 aa14.51□□□□□ -0.09
CAPN3-220ENST00000569827 TSHZ3Q63HK5 1081 aa14.51□□□□□ -0.09
CAPN3-220ENST00000569827 AMOTL1Q8IY63 956 aa14.51□□□□□ -0.09
CAPN3-220ENST00000569827 CHMP4CQ96CF2 233 aa14.51□□□□□ -0.09
CAPN3-220ENST00000569827 RNPC3Q96LT9 517 aaKnown RBP14.51□□□□□ -0.09
CAPN3-220ENST00000569827 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.51□□□□□ -0.09
CAPN3-220ENST00000569827 GOPCQ9HD26 462 aa14.51□□□□□ -0.09
CAPN3-220ENST00000569827 ZBTB40Q9NUA8 1239 aa14.51□□□□□ -0.09
CAPN3-220ENST00000569827 ADAMTS5Q9UNA0 930 aa14.51□□□□□ -0.09
CAPN3-220ENST00000569827 RIPK3Q9Y572 518 aa14.51□□□□□ -0.09
CAPN3-220ENST00000569827 REV3LO60673 3130 aa14.5□□□□□ -0.09
CAPN3-220ENST00000569827 MUC3AQ02505 3323 aa14.5□□□□□ -0.09
CAPN3-220ENST00000569827 SYNRGQ9UMZ2 1314 aa14.5□□□□□ -0.09
CAPN3-220ENST00000569827 ADCY6O43306 1168 aa14.5□□□□□ -0.09
CAPN3-220ENST00000569827 SLC25A27O95847 323 aa14.5□□□□□ -0.09
CAPN3-220ENST00000569827 RPAP2Q8IXW5 612 aaPredicted RBP14.5□□□□□ -0.09
CAPN3-220ENST00000569827 CPXCR1Q8N123 301 aa14.5□□□□□ -0.09
CAPN3-220ENST00000569827 CCDC17Q96LX7 622 aa14.5□□□□□ -0.09
CAPN3-220ENST00000569827 KANSL2Q9H9L4 492 aa14.5□□□□□ -0.09
CAPN3-220ENST00000569827 MINDY4BA8MYZ0 360 aa14.49□□□□□ -0.09
CAPN3-220ENST00000569827 ADAMTS4O75173 837 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms