RNA–Protein interactions for RNA: ENST00000568169.5

TCF4-238, Transcript of transcription factor 4, human

TSL 5

Gene TCF4, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-238	ENST00000568169	ITPRIP	Q8IWB1	547 aa		13.78	□□□□□ -0.2
TCF4-238	ENST00000568169	SDR42E1	Q8WUS8	393 aa		13.78	□□□□□ -0.2
TCF4-238	ENST00000568169	VCPKMT	Q9H867	229 aa		13.78	□□□□□ -0.2
TCF4-238	ENST00000568169	ARHGEF10L	Q9HCE6	1279 aa		13.78	□□□□□ -0.2
TCF4-238	ENST00000568169	ADAMTS5	Q9UNA0	930 aa		13.78	□□□□□ -0.2
TCF4-238	ENST00000568169	EXOC6B	Q9Y2D4	811 aa		13.78	□□□□□ -0.2
TCF4-238	ENST00000568169	TACC3	Q9Y6A5	838 aa		13.78	□□□□□ -0.2
TCF4-238	ENST00000568169	ZNF532	Q9HCE3	1301 aa		13.78	□□□□□ -0.2
TCF4-238	ENST00000568169	TMEM265	A0A087WTH1	108 aa		13.77	□□□□□ -0.21
TCF4-238	ENST00000568169	KIAA0355	O15063	1070 aa		13.77	□□□□□ -0.21
TCF4-238	ENST00000568169	SLC25A27	O95847	323 aa		13.77	□□□□□ -0.21
TCF4-238	ENST00000568169	TMEM132B	Q14DG7	1078 aa		13.77	□□□□□ -0.21
TCF4-238	ENST00000568169	FTSJ3	Q8IY81	847 aa	Known RBP	13.77	□□□□□ -0.21
TCF4-238	ENST00000568169	SPICE1	Q8N0Z3	855 aa		13.77	□□□□□ -0.21
TCF4-238	ENST00000568169	LCORL	Q8N3X6	602 aa		13.77	□□□□□ -0.21
TCF4-238	ENST00000568169	DYNLL2	Q96FJ2	89 aa		13.77	□□□□□ -0.21
TCF4-238	ENST00000568169	GREB1L	Q9C091	1923 aa	Predicted RBP	13.77	□□□□□ -0.21
TCF4-238	ENST00000568169	SH2D4A	Q9H788	454 aa		13.77	□□□□□ -0.21
TCF4-238	ENST00000568169	XPNPEP3	Q9NQH7	507 aa		13.77	□□□□□ -0.21
TCF4-238	ENST00000568169	ROBO3	Q96MS0	1386 aa		13.76	□□□□□ -0.21
TCF4-238	ENST00000568169	WDR46	O15213	610 aa	Known RBP	13.76	□□□□□ -0.21
TCF4-238	ENST00000568169	CLTB	P09497	229 aa		13.76	□□□□□ -0.21
TCF4-238	ENST00000568169	RARB	P10826	455 aa		13.76	□□□□□ -0.21
TCF4-238	ENST00000568169	AKR1B1	P15121	316 aa		13.76	□□□□□ -0.21
TCF4-238	ENST00000568169	EPHB4	P54760	987 aa		13.76	□□□□□ -0.21
TCF4-238	ENST00000568169	ICA1	Q05084	483 aa		13.76	□□□□□ -0.21
TCF4-238	ENST00000568169	RIOX2	Q8IUF8	465 aa		13.76	□□□□□ -0.21
TCF4-238	ENST00000568169	RHPN1	Q8TCX5	695 aa		13.76	□□□□□ -0.21
TCF4-238	ENST00000568169	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	13.76	□□□□□ -0.21
TCF4-238	ENST00000568169	CCDC17	Q96LX7	622 aa		13.76	□□□□□ -0.21
TCF4-238	ENST00000568169	IL1RAPL2	Q9NP60	686 aa		13.76	□□□□□ -0.21
TCF4-238	ENST00000568169	DIS3	Q9Y2L1	958 aa	Known RBP	13.76	□□□□□ -0.21
TCF4-238	ENST00000568169	MYH4	Q9Y623	1939 aa		13.76	□□□□□ -0.21
TCF4-238	ENST00000568169	PGK1	P00558	417 aa		13.75	□□□□□ -0.21
TCF4-238	ENST00000568169	ZNF792	Q3KQV3	632 aa		13.75	□□□□□ -0.21
TCF4-238	ENST00000568169	HSP90AB4P	Q58FF6	505 aa		13.75	□□□□□ -0.21
TCF4-238	ENST00000568169	RNF180	Q86T96	592 aa		13.75	□□□□□ -0.21
TCF4-238	ENST00000568169	RNPC3	Q96LT9	517 aa	Known RBP	13.75	□□□□□ -0.21
TCF4-238	ENST00000568169	MMP19	Q99542	508 aa		13.75	□□□□□ -0.21
TCF4-238	ENST00000568169	TINF2	Q9BSI4	451 aa		13.75	□□□□□ -0.21
TCF4-238	ENST00000568169	ARMT1	Q9H993	441 aa		13.75	□□□□□ -0.21
TCF4-238	ENST00000568169	ATP8A2	Q9NTI2	1148 aa		13.75	□□□□□ -0.21
TCF4-238	ENST00000568169	LAMA2	P24043	3122 aa	Known RBP	13.74	□□□□□ -0.21
TCF4-238	ENST00000568169		A0A1W2PQ45	241 aa	Predicted RBP	13.74	□□□□□ -0.21
TCF4-238	ENST00000568169		A0A1W2PQY0	241 aa		13.74	□□□□□ -0.21
TCF4-238	ENST00000568169	SMIM22	K7EJ46	135 aa		13.74	□□□□□ -0.21
TCF4-238	ENST00000568169	GOLIM4	O00461	696 aa		13.74	□□□□□ -0.21
TCF4-238	ENST00000568169	PRKAB2	O43741	272 aa		13.74	□□□□□ -0.21
TCF4-238	ENST00000568169	PGK2	P07205	417 aa		13.74	□□□□□ -0.21
TCF4-238	ENST00000568169	ZNF865	P0CJ78	1059 aa	Predicted RBP	13.74	□□□□□ -0.21
TCF4-238	ENST00000568169	FOSL2	P15408	326 aa		13.74	□□□□□ -0.21
TCF4-238	ENST00000568169	RAG1	P15918	1043 aa		13.74	□□□□□ -0.21
TCF4-238	ENST00000568169	TAL1	P17542	331 aa	Predicted RBP	13.74	□□□□□ -0.21
TCF4-238	ENST00000568169	CDK8	P49336	464 aa		13.74	□□□□□ -0.21
TCF4-238	ENST00000568169	KCTD2	Q14681	263 aa		13.74	□□□□□ -0.21
TCF4-238	ENST00000568169	C12orf60	Q5U649	245 aa		13.74	□□□□□ -0.21
TCF4-238	ENST00000568169	FBXO28	Q9NVF7	368 aa		13.74	□□□□□ -0.21
TCF4-238	ENST00000568169	VWA5A	O00534	786 aa		13.73	□□□□□ -0.21
TCF4-238	ENST00000568169	ADAMTS4	O75173	837 aa		13.73	□□□□□ -0.21
TCF4-238	ENST00000568169	EEF2	P13639	858 aa	Known RBP	13.73	□□□□□ -0.21
TCF4-238	ENST00000568169	AKR1A1	P14550	325 aa		13.73	□□□□□ -0.21
TCF4-238	ENST00000568169	STAT3	P40763	770 aa		13.73	□□□□□ -0.21
TCF4-238	ENST00000568169	FPGS	Q05932	587 aa		13.73	□□□□□ -0.21
TCF4-238	ENST00000568169	ANKRD33	Q7Z3H0	272 aa		13.73	□□□□□ -0.21
TCF4-238	ENST00000568169	CLASRP	Q8N2M8	674 aa	Known RBP	13.73	□□□□□ -0.21
TCF4-238	ENST00000568169	REPS2	Q8NFH8	660 aa		13.73	□□□□□ -0.21
TCF4-238	ENST00000568169	TOX2	Q96NM4	488 aa		13.73	□□□□□ -0.21
TCF4-238	ENST00000568169	DNAJC2	Q99543	621 aa	Known RBP	13.73	□□□□□ -0.21
TCF4-238	ENST00000568169	TSEN34	Q9BSV6	310 aa	Known RBP	13.73	□□□□□ -0.21
TCF4-238	ENST00000568169	KANSL2	Q9H9L4	492 aa		13.73	□□□□□ -0.21
TCF4-238	ENST00000568169	PRDM6	Q9NQX0	595 aa		13.73	□□□□□ -0.21
TCF4-238	ENST00000568169	TMEM39A	Q9NV64	488 aa		13.73	□□□□□ -0.21
TCF4-238	ENST00000568169	ZNF214	Q9UL59	606 aa	Predicted RBP	13.73	□□□□□ -0.21
TCF4-238	ENST00000568169	PPP1R9A	Q9ULJ8	1098 aa		13.73	□□□□□ -0.21
TCF4-238	ENST00000568169	GBF1	Q92538	1859 aa		13.73	□□□□□ -0.21
TCF4-238	ENST00000568169	CYP2D7	A0A087X1C5	515 aa		13.72	□□□□□ -0.21
TCF4-238	ENST00000568169	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	13.72	□□□□□ -0.21
TCF4-238	ENST00000568169	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	13.72	□□□□□ -0.21
TCF4-238	ENST00000568169	USP17L12	C9JPN9	530 aa		13.72	□□□□□ -0.21
TCF4-238	ENST00000568169	USP17L21	D6R901	530 aa		13.72	□□□□□ -0.21
TCF4-238	ENST00000568169	PQBP1	O60828	265 aa	Known RBP	13.72	□□□□□ -0.21
TCF4-238	ENST00000568169	MBD4	O95243	580 aa		13.72	□□□□□ -0.21
TCF4-238	ENST00000568169	COPB2	P35606	906 aa		13.72	□□□□□ -0.21
TCF4-238	ENST00000568169	ADD2	P35612	726 aa		13.72	□□□□□ -0.21
TCF4-238	ENST00000568169	FAAP100	Q0VG06	881 aa		13.72	□□□□□ -0.21
TCF4-238	ENST00000568169	GRIN2C	Q14957	1233 aa		13.72	□□□□□ -0.21
TCF4-238	ENST00000568169	SLFNL1	Q499Z3	407 aa		13.72	□□□□□ -0.21
TCF4-238	ENST00000568169	C16orf86	Q6ZW13	317 aa		13.72	□□□□□ -0.21
TCF4-238	ENST00000568169	SYMPK	Q92797	1274 aa	Known RBP	13.72	□□□□□ -0.21
TCF4-238	ENST00000568169	KIF1BP	Q96EK5	621 aa		13.72	□□□□□ -0.21
TCF4-238	ENST00000568169	DCDC2C	A8MYV0	355 aa		13.71	□□□□□ -0.21
TCF4-238	ENST00000568169	ACLY	P53396	1101 aa		13.71	□□□□□ -0.21
TCF4-238	ENST00000568169	CCSAP	Q6IQ19	270 aa	Predicted RBP	13.71	□□□□□ -0.21
TCF4-238	ENST00000568169	MSL3	Q8N5Y2	521 aa	Known RBP	13.71	□□□□□ -0.21
TCF4-238	ENST00000568169	KLHDC9	Q8NEP7	349 aa		13.71	□□□□□ -0.21
TCF4-238	ENST00000568169	LENG1	Q96BZ8	264 aa	Predicted RBP	13.71	□□□□□ -0.21
TCF4-238	ENST00000568169	GOPC	Q9HD26	462 aa		13.71	□□□□□ -0.21
TCF4-238	ENST00000568169	PAG1	Q9NWQ8	432 aa		13.71	□□□□□ -0.21
TCF4-238	ENST00000568169	CNPY2	Q9Y2B0	182 aa		13.71	□□□□□ -0.21
TCF4-238	ENST00000568169	ZBED9	Q6R2W3	1325 aa		13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms