RNA–Protein interactions for RNA: ENST00000567935.1

COMMD4-221, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 502 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-221ENST00000567935 SWAP70Q9UH65 585 aa16.9■□□□□ 0.3
COMMD4-221ENST00000567935 RCOR1Q9UKL0 485 aa16.9■□□□□ 0.3
COMMD4-221ENST00000567935 ZNF646O15015 1829 aaPredicted RBP16.9■□□□□ 0.3
COMMD4-221ENST00000567935 SMIM22K7EJ46 135 aa16.89■□□□□ 0.29
COMMD4-221ENST00000567935 SOX1O00570 391 aaPredicted RBP16.89■□□□□ 0.29
COMMD4-221ENST00000567935 GADD45BO75293 160 aaPredicted RBP16.89■□□□□ 0.29
COMMD4-221ENST00000567935 MYCP01106 439 aaPredicted RBP16.89■□□□□ 0.29
COMMD4-221ENST00000567935 TSPY3P0CV98 308 aa16.89■□□□□ 0.29
COMMD4-221ENST00000567935 TSPY8P0CW00 308 aa16.89■□□□□ 0.29
COMMD4-221ENST00000567935 GNAQP50148 359 aa16.89■□□□□ 0.29
COMMD4-221ENST00000567935 SAFBQ15424 915 aaKnown RBP eCLIP16.89■□□□□ 0.29
COMMD4-221ENST00000567935 SLC4A8Q2Y0W8 1093 aa16.89■□□□□ 0.29
COMMD4-221ENST00000567935 PPP4R3BQ5MIZ7 849 aa16.89■□□□□ 0.29
COMMD4-221ENST00000567935 CCDC183Q5T5S1 534 aa16.89■□□□□ 0.29
COMMD4-221ENST00000567935 NBPF11Q86T75 865 aa16.89■□□□□ 0.29
COMMD4-221ENST00000567935 CCDC144CPQ8IYA2 1237 aa16.89■□□□□ 0.29
COMMD4-221ENST00000567935 AGBL3Q8NEM8 1001 aa16.89■□□□□ 0.29
COMMD4-221ENST00000567935 NEDD1Q8NHV4 660 aa16.89■□□□□ 0.29
COMMD4-221ENST00000567935 KAT14Q9H8E8 782 aa16.89■□□□□ 0.29
COMMD4-221ENST00000567935 USP40Q9NVE5 1235 aa16.89■□□□□ 0.29
COMMD4-221ENST00000567935 ECM29Q5VYK3 1845 aa16.89■□□□□ 0.29
COMMD4-221ENST00000567935 PLIN4Q96Q06 1357 aa16.89■□□□□ 0.29
COMMD4-221ENST00000567935 PRPF3O43395 683 aaKnown RBP16.88■□□□□ 0.29
COMMD4-221ENST00000567935 WDHD1O75717 1129 aaPredicted RBP16.88■□□□□ 0.29
COMMD4-221ENST00000567935 HLA-DOAP06340 250 aa16.88■□□□□ 0.29
COMMD4-221ENST00000567935 RASA1P20936 1047 aa16.88■□□□□ 0.29
COMMD4-221ENST00000567935 CDK8P49336 464 aa16.88■□□□□ 0.29
COMMD4-221ENST00000567935 PLCD1P51178 756 aa16.88■□□□□ 0.29
COMMD4-221ENST00000567935 NBPF9Q3BBW0 867 aa16.88■□□□□ 0.29
COMMD4-221ENST00000567935 FAM47AQ5JRC9 791 aa16.88■□□□□ 0.29
COMMD4-221ENST00000567935 KRT40Q6A162 431 aa16.88■□□□□ 0.29
COMMD4-221ENST00000567935 APOBEC3HQ6NTF7 200 aaKnown RBP16.88■□□□□ 0.29
COMMD4-221ENST00000567935 PHKBQ93100 1093 aa16.88■□□□□ 0.29
COMMD4-221ENST00000567935 GMLQ99445 158 aa16.88■□□□□ 0.29
COMMD4-221ENST00000567935 TMEM63CQ9P1W3 806 aa16.88■□□□□ 0.29
COMMD4-221ENST00000567935 SAP30BPQ9UHR5 308 aaKnown RBP16.88■□□□□ 0.29
COMMD4-221ENST00000567935 MYH6P13533 1939 aa16.88■□□□□ 0.29
COMMD4-221ENST00000567935 MANSC4A6NHS7 340 aaPredicted RBP16.87■□□□□ 0.29
COMMD4-221ENST00000567935 F8W031 263 aaPredicted RBP16.87■□□□□ 0.29
COMMD4-221ENST00000567935 YEATS4O95619 227 aa16.87■□□□□ 0.29
COMMD4-221ENST00000567935 GUCY1B3Q02153 619 aa16.87■□□□□ 0.29
COMMD4-221ENST00000567935 CRHR2Q13324 411 aa16.87■□□□□ 0.29
COMMD4-221ENST00000567935 LDLRAD1Q5T700 205 aa16.87■□□□□ 0.29
COMMD4-221ENST00000567935 RCSD1Q6JBY9 416 aa16.87■□□□□ 0.29
COMMD4-221ENST00000567935 CDC42EP5Q6NZY7 148 aa16.87■□□□□ 0.29
COMMD4-221ENST00000567935 FAM173BQ6P4H8 233 aa16.87■□□□□ 0.29
COMMD4-221ENST00000567935 TMTC3Q6ZXV5 915 aa16.87■□□□□ 0.29
COMMD4-221ENST00000567935 FAM177A1Q8N128 213 aaPredicted RBP16.87■□□□□ 0.29
COMMD4-221ENST00000567935 DYNLL2Q96FJ2 89 aa16.87■□□□□ 0.29
COMMD4-221ENST00000567935 LRCH3Q96II8 777 aa16.87■□□□□ 0.29
COMMD4-221ENST00000567935 OSBPL5Q9H0X9 879 aaPredicted RBP16.87■□□□□ 0.29
COMMD4-221ENST00000567935 EHD4Q9H223 541 aa16.87■□□□□ 0.29
COMMD4-221ENST00000567935 DHX36Q9H2U1 1008 aaKnown RBP16.87■□□□□ 0.29
COMMD4-221ENST00000567935 POLR3EQ9NVU0 708 aa16.87■□□□□ 0.29
COMMD4-221ENST00000567935 RTEL1Q9NZ71 1219 aa16.87■□□□□ 0.29
COMMD4-221ENST00000567935 FZD1Q9UP38 647 aa16.87■□□□□ 0.29
COMMD4-221ENST00000567935 PTCH2Q9Y6C5 1203 aa16.87■□□□□ 0.29
COMMD4-221ENST00000567935 LAMA3Q16787 3333 aa16.87■□□□□ 0.29
COMMD4-221ENST00000567935 U2AF2P26368 475 aaKnown RBP eCLIP16.86■□□□□ 0.29
COMMD4-221ENST00000567935 NF2P35240 595 aa16.86■□□□□ 0.29
COMMD4-221ENST00000567935 MMP14P50281 582 aa16.86■□□□□ 0.29
COMMD4-221ENST00000567935 GABPAQ06546 454 aa16.86■□□□□ 0.29
COMMD4-221ENST00000567935 SLC9C1Q4G0N8 1177 aa16.86■□□□□ 0.29
COMMD4-221ENST00000567935 MYSM1Q5VVJ2 828 aa16.86■□□□□ 0.29
COMMD4-221ENST00000567935 ARMC9Q7Z3E5 817 aa16.86■□□□□ 0.29
COMMD4-221ENST00000567935 KCNG4Q8TDN1 519 aa16.86■□□□□ 0.29
COMMD4-221ENST00000567935 LZTS2Q9BRK4 669 aa16.86■□□□□ 0.29
COMMD4-221ENST00000567935 COL25A1Q9BXS0 654 aaPredicted RBP16.86■□□□□ 0.29
COMMD4-221ENST00000567935 IDI2Q9BXS1 227 aa16.86■□□□□ 0.29
COMMD4-221ENST00000567935 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.86■□□□□ 0.29
COMMD4-221ENST00000567935 TFIP11Q9UBB9 837 aaKnown RBP16.86■□□□□ 0.29
COMMD4-221ENST00000567935 COL2A1P02458 1487 aaPredicted RBP16.86■□□□□ 0.29
COMMD4-221ENST00000567935 NOVP48745 357 aa16.85■□□□□ 0.29
COMMD4-221ENST00000567935 FOSBP53539 338 aa16.85■□□□□ 0.29
COMMD4-221ENST00000567935 INHBEP58166 350 aa16.85■□□□□ 0.29
COMMD4-221ENST00000567935 SP3Q02447 781 aa16.85■□□□□ 0.29
COMMD4-221ENST00000567935 FUT2Q10981 343 aa16.85■□□□□ 0.29
COMMD4-221ENST00000567935 GNL2Q13823 731 aaKnown RBP16.85■□□□□ 0.29
COMMD4-221ENST00000567935 LRSAM1Q6UWE0 723 aa16.85■□□□□ 0.29
COMMD4-221ENST00000567935 PNMA1Q8ND90 353 aa16.85■□□□□ 0.29
COMMD4-221ENST00000567935 DPF3Q92784 378 aa16.85■□□□□ 0.29
COMMD4-221ENST00000567935 FOXP1Q9H334 677 aaPredicted RBP16.85■□□□□ 0.29
COMMD4-221ENST00000567935 DDX19AQ9NUU7 478 aaKnown RBP16.85■□□□□ 0.29
COMMD4-221ENST00000567935 MMP1P03956 469 aa16.84■□□□□ 0.29
COMMD4-221ENST00000567935 NASPP49321 788 aaPredicted RBP16.84■□□□□ 0.29
COMMD4-221ENST00000567935 EVX2Q03828 476 aa16.84■□□□□ 0.29
COMMD4-221ENST00000567935 GRM4Q14833 912 aa16.84■□□□□ 0.29
COMMD4-221ENST00000567935 KIAA0825Q8IV33 1275 aa16.84■□□□□ 0.29
COMMD4-221ENST00000567935 CCDC17Q96LX7 622 aa16.84■□□□□ 0.29
COMMD4-221ENST00000567935 USP28Q96RU2 1077 aa16.84■□□□□ 0.29
COMMD4-221ENST00000567935 GRPEL1Q9HAV7 217 aa16.84■□□□□ 0.29
COMMD4-221ENST00000567935 IL17RBQ9NRM6 502 aa16.84■□□□□ 0.29
COMMD4-221ENST00000567935 SERPINB13Q9UIV8 391 aa16.84■□□□□ 0.29
COMMD4-221ENST00000567935 MYH8P13535 1937 aa16.84■□□□□ 0.29
COMMD4-221ENST00000567935 NMT2O60551 498 aa16.83■□□□□ 0.28
COMMD4-221ENST00000567935 PPFIA3O75145 1194 aa16.83■□□□□ 0.28
COMMD4-221ENST00000567935 TOP1P11387 765 aaKnown RBP16.83■□□□□ 0.28
COMMD4-221ENST00000567935 SMARCA1P28370 1054 aa16.83■□□□□ 0.28
COMMD4-221ENST00000567935 OTUD7BQ6GQQ9 843 aa16.83■□□□□ 0.28
COMMD4-221ENST00000567935 SHISA4Q96DD7 197 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms