RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 UFL1O94874 794 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 SERPINB2P05120 415 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 GYS1P13807 737 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 ATP2B1P20020 1258 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 RASA1P20936 1047 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 HOXA7P31268 230 aaPredicted RBP7.1□□□□□ -1.27
CLN3-223ENST00000566472 BTDP43251 543 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 FMR1Q06787 632 aaKnown RBP eCLIP7.1□□□□□ -1.27
CLN3-223ENST00000566472 PTGDRQ13258 359 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 CUL4BQ13620 913 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 ZNF174Q15697 407 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 SPECC1Q5M775 1068 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 SPECC1LQ69YQ0 1117 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 ISM2Q6H9L7 571 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 PIK3AP1Q6ZUJ8 805 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 KRT25Q7Z3Z0 450 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 AMIGO3Q86WK7 504 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 ZNF710Q8N1W2 664 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 PDCL2Q8N4E4 241 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 DPF2Q92785 391 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 ERO1AQ96HE7 468 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 CCDC94Q9BW85 323 aaPredicted RBP7.1□□□□□ -1.27
CLN3-223ENST00000566472 NAA15Q9BXJ9 866 aaKnown RBP7.1□□□□□ -1.27
CLN3-223ENST00000566472 CUEDC2Q9H467 287 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 L2HGDHQ9H9P8 463 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 IL17RBQ9NRM6 502 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 INTS13Q9NVM9 706 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 BARHL2Q9NY43 387 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 MAD2L2Q9UI95 211 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 KAT6BQ8WYB5 2073 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 ITIH6Q6UXX5 1313 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 A0A087X0B3 334 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 VWA3AA6NCI4 1184 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 STX10O60499 249 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 NMT2O60551 498 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 SLU7O95391 586 aaKnown RBP7.09□□□□□ -1.27
CLN3-223ENST00000566472 CDK11BP21127 795 aaKnown RBP7.09□□□□□ -1.27
CLN3-223ENST00000566472 PPP1R2P41236 205 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 TRIM14Q14142 442 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 KCNB1Q14721 858 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 NR1I3Q14994 352 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 FILIP1LQ4L180 1135 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 PPP4R3BQ5MIZ7 849 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 MEX3CQ5U5Q3 659 aaKnown RBP7.09□□□□□ -1.27
CLN3-223ENST00000566472 CDKAL1Q5VV42 579 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 PPP1R18Q6NYC8 613 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 PDXDC2PQ6P474 469 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 USP49Q70CQ1 688 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 SMIM5Q71RC9 77 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 TEX11Q8IYF3 940 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 SEPT12Q8IYM1 358 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 PDILTQ8N807 584 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 C4orf32Q8N8J7 132 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 CCDC51Q96ER9 411 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 EPSTI1Q96J88 318 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 AK8Q96MA6 479 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 TMEM47Q9BQJ4 181 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 SRRTQ9BXP5 876 aaKnown RBP7.09□□□□□ -1.27
CLN3-223ENST00000566472 CCSER1Q9C0I3 900 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 COA1Q9GZY4 146 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 CGNQ9P2M7 1197 aaKnown RBP7.09□□□□□ -1.27
CLN3-223ENST00000566472 RWDD2AQ9UIY3 292 aa7.09□□□□□ -1.27
CLN3-223ENST00000566472 BAZ2AQ9UIF9 1905 aaKnown RBP7.09□□□□□ -1.27
CLN3-223ENST00000566472 UBR3Q6ZT12 1888 aa7.09□□□□□ -1.28
CLN3-223ENST00000566472 FLT1P17948 1338 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 AFF2P51816 1311 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 LTBP1Q14766 1721 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 QSER1Q2KHR3 1735 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 hCG_1642624A0A1W2PR95 340 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 PPP1R3GB7ZBB8 358 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 TMEM232C9JQI7 657 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 STXBP3O00186 592 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 WNT7AO00755 349 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 PARP1P09874 1014 aaKnown RBP7.08□□□□□ -1.28
CLN3-223ENST00000566472 FECHP22830 423 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 GNA11P29992 359 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 MCM7P33993 719 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 PBX1P40424 430 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 CDK8P49336 464 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 RHBDL3P58872 404 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 ETF1P62495 437 aaKnown RBP7.08□□□□□ -1.28
CLN3-223ENST00000566472 EVX2Q03828 476 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 NCBP1Q09161 790 aaKnown RBP7.08□□□□□ -1.28
CLN3-223ENST00000566472 DIXDC1Q155Q3 683 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 ZNF827Q17R98 1081 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 ASPRV1Q53RT3 343 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 ZNF658Q5TYW1 1059 aaPredicted RBP7.08□□□□□ -1.28
CLN3-223ENST00000566472 WWC2Q6AWC2 1192 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 DTHD1Q6ZMT9 781 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 TMEM139Q8IV31 216 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 MAPKAPK5Q8IW41 473 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 SP8Q8IXZ3 490 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 GRAMD1CQ8IYS0 662 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 CCDC24Q8N4L8 307 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 ANKRD20A12PQ8NF67 263 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 TBC1D16Q8TBP0 767 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 NOC3LQ8WTT2 800 aaKnown RBP7.08□□□□□ -1.28
CLN3-223ENST00000566472 TGFBRAP1Q8WUH2 860 aa7.08□□□□□ -1.28
CLN3-223ENST00000566472 RRP36Q96EU6 259 aaKnown RBP7.08□□□□□ -1.28
CLN3-223ENST00000566472 DYNLL2Q96FJ2 89 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms