RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 ZNF214Q9UL59 606 aaPredicted RBP11.66□□□□□ -0.54
CLN3-220ENST00000566040 HPS5Q9UPZ3 1129 aa11.66□□□□□ -0.54
CLN3-220ENST00000566040 TRIM17Q9Y577 477 aa11.66□□□□□ -0.54
CLN3-220ENST00000566040 PTCH2Q9Y6C5 1203 aa11.66□□□□□ -0.54
CLN3-220ENST00000566040 MYPNQ86TC9 1320 aa11.65□□□□□ -0.54
CLN3-220ENST00000566040 TSPY2A6NKD2 308 aa11.65□□□□□ -0.54
CLN3-220ENST00000566040 E7EWF7 191 aa11.65□□□□□ -0.54
CLN3-220ENST00000566040 SLC27A2O14975 620 aa11.65□□□□□ -0.54
CLN3-220ENST00000566040 SLC3A2P08195 630 aaKnown RBP11.65□□□□□ -0.54
CLN3-220ENST00000566040 PCP11498 1178 aaKnown RBP11.65□□□□□ -0.54
CLN3-220ENST00000566040 PSMC4P43686 418 aa11.65□□□□□ -0.54
CLN3-220ENST00000566040 IRX3P78415 501 aaPredicted RBP11.65□□□□□ -0.54
CLN3-220ENST00000566040 PRKCZQ05513 592 aa11.65□□□□□ -0.54
CLN3-220ENST00000566040 PABPC4Q13310 644 aaKnown RBP eCLIP11.65□□□□□ -0.54
CLN3-220ENST00000566040 FBXO46Q6PJ61 603 aaPredicted RBP11.65□□□□□ -0.54
CLN3-220ENST00000566040 MFSD6Q6ZSS7 791 aa11.65□□□□□ -0.54
CLN3-220ENST00000566040 SMCR8Q8TEV9 937 aaPredicted RBP11.65□□□□□ -0.54
CLN3-220ENST00000566040 ANKS1AQ92625 1134 aa11.65□□□□□ -0.54
CLN3-220ENST00000566040 KCNB2Q92953 911 aa11.65□□□□□ -0.54
CLN3-220ENST00000566040 EFCC1Q9HA90 598 aa11.65□□□□□ -0.54
CLN3-220ENST00000566040 GPHNQ9NQX3 736 aaPredicted RBP11.65□□□□□ -0.54
CLN3-220ENST00000566040 PPP1R9AQ9ULJ8 1098 aa11.65□□□□□ -0.54
CLN3-220ENST00000566040 U3KPZ7 1027 aaPredicted RBP11.65□□□□□ -0.54
CLN3-220ENST00000566040 ZNF536O15090 1300 aa11.64□□□□□ -0.55
CLN3-220ENST00000566040 TAL1P17542 331 aaPredicted RBP11.64□□□□□ -0.55
CLN3-220ENST00000566040 TMEM132BQ14DG7 1078 aa11.64□□□□□ -0.55
CLN3-220ENST00000566040 IMMTQ16891 758 aaKnown RBP11.64□□□□□ -0.55
CLN3-220ENST00000566040 CREB3L3Q68CJ9 461 aa11.64□□□□□ -0.55
CLN3-220ENST00000566040 GMCL1Q96IK5 515 aa11.64□□□□□ -0.55
CLN3-220ENST00000566040 PAGR1Q9BTK6 254 aa11.64□□□□□ -0.55
CLN3-220ENST00000566040 TANGO6Q9C0B7 1094 aa11.64□□□□□ -0.55
CLN3-220ENST00000566040 SH2D4AQ9H788 454 aa11.64□□□□□ -0.55
CLN3-220ENST00000566040 ZNF287Q9HBT7 754 aa11.64□□□□□ -0.55
CLN3-220ENST00000566040 SRRDQ9UH36 339 aa11.64□□□□□ -0.55
CLN3-220ENST00000566040 RABGAP1Q9Y3P9 1069 aa11.64□□□□□ -0.55
CLN3-220ENST00000566040 TNKSO95271 1327 aa11.63□□□□□ -0.55
CLN3-220ENST00000566040 VWA5AO00534 786 aa11.63□□□□□ -0.55
CLN3-220ENST00000566040 FLOT1O75955 427 aa11.63□□□□□ -0.55
CLN3-220ENST00000566040 PDHBP11177 359 aa11.63□□□□□ -0.55
CLN3-220ENST00000566040 COG2Q14746 738 aa11.63□□□□□ -0.55
CLN3-220ENST00000566040 ADCK5Q3MIX3 580 aa11.63□□□□□ -0.55
CLN3-220ENST00000566040 MORN1Q5T089 497 aa11.63□□□□□ -0.55
CLN3-220ENST00000566040 SLFN13Q68D06 897 aa11.63□□□□□ -0.55
CLN3-220ENST00000566040 TTBK2Q6IQ55 1244 aa11.63□□□□□ -0.55
CLN3-220ENST00000566040 ARMC5Q96C12 935 aa11.63□□□□□ -0.55
CLN3-220ENST00000566040 CHMP4CQ96CF2 233 aa11.63□□□□□ -0.55
CLN3-220ENST00000566040 MOV10L1Q9BXT6 1211 aaKnown RBP11.63□□□□□ -0.55
CLN3-220ENST00000566040 RNF41Q9H4P4 317 aaPredicted RBP11.63□□□□□ -0.55
CLN3-220ENST00000566040 GOPCQ9HD26 462 aa11.63□□□□□ -0.55
CLN3-220ENST00000566040 CTNNA3Q9UI47 895 aa11.63□□□□□ -0.55
CLN3-220ENST00000566040 STX8Q9UNK0 236 aa11.63□□□□□ -0.55
CLN3-220ENST00000566040 TOP1P11387 765 aaKnown RBP11.62□□□□□ -0.55
CLN3-220ENST00000566040 MCCP23508 829 aa11.62□□□□□ -0.55
CLN3-220ENST00000566040 BTNL9Q6UXG8 535 aa11.62□□□□□ -0.55
CLN3-220ENST00000566040 KCTD1Q719H9 257 aa11.62□□□□□ -0.55
CLN3-220ENST00000566040 ESR2Q92731 530 aa11.62□□□□□ -0.55
CLN3-220ENST00000566040 ZSCAN10Q96SZ4 725 aaPredicted RBP11.62□□□□□ -0.55
CLN3-220ENST00000566040 SPATC1LQ9H0A9 340 aa11.62□□□□□ -0.55
CLN3-220ENST00000566040 CPVLQ9H3G5 476 aa11.62□□□□□ -0.55
CLN3-220ENST00000566040 ANO2Q9NQ90 1003 aa11.62□□□□□ -0.55
CLN3-220ENST00000566040 TOMM22Q9NS69 142 aa11.62□□□□□ -0.55
CLN3-220ENST00000566040 RIPK3Q9Y572 518 aa11.62□□□□□ -0.55
CLN3-220ENST00000566040 PLA2G6O60733 806 aa11.61□□□□□ -0.55
CLN3-220ENST00000566040 BMP3P12645 472 aa11.61□□□□□ -0.55
CLN3-220ENST00000566040 FLT3LGP49771 235 aa11.61□□□□□ -0.55
CLN3-220ENST00000566040 FCGRTP55899 365 aa11.61□□□□□ -0.55
CLN3-220ENST00000566040 TRIM32Q13049 653 aa11.61□□□□□ -0.55
CLN3-220ENST00000566040 CHST3Q7LGC8 479 aa11.61□□□□□ -0.55
CLN3-220ENST00000566040 GPR142Q7Z601 462 aa11.61□□□□□ -0.55
CLN3-220ENST00000566040 DGKHQ86XP1 1220 aa11.61□□□□□ -0.55
CLN3-220ENST00000566040 GPRC5AQ8NFJ5 357 aa11.61□□□□□ -0.55
CLN3-220ENST00000566040 IGDCC4Q8TDY8 1250 aa11.61□□□□□ -0.55
CLN3-220ENST00000566040 GTF3C2Q8WUA4 911 aaPredicted RBP11.61□□□□□ -0.55
CLN3-220ENST00000566040 ZNF333Q96JL9 665 aa11.61□□□□□ -0.55
CLN3-220ENST00000566040 FGD4Q96M96 766 aa11.61□□□□□ -0.55
CLN3-220ENST00000566040 SLF1Q9BQI6 1058 aa11.61□□□□□ -0.55
CLN3-220ENST00000566040 SLC38A10Q9HBR0 1119 aa11.61□□□□□ -0.55
CLN3-220ENST00000566040 FLRT1Q9NZU1 646 aa11.61□□□□□ -0.55
CLN3-220ENST00000566040 DNAH12Q6ZR08 3092 aa11.61□□□□□ -0.55
CLN3-220ENST00000566040 FRMPD2Q68DX3 1309 aaPredicted RBP11.6□□□□□ -0.55
CLN3-220ENST00000566040 TMEM232C9JQI7 657 aa11.6□□□□□ -0.55
CLN3-220ENST00000566040 TNPO2O14787 897 aaKnown RBP11.6□□□□□ -0.55
CLN3-220ENST00000566040 ATP2A1O14983 1001 aa11.6□□□□□ -0.55
CLN3-220ENST00000566040 FMNL1O95466 1100 aaPredicted RBP11.6□□□□□ -0.55
CLN3-220ENST00000566040 GNRH1P01148 92 aa11.6□□□□□ -0.55
CLN3-220ENST00000566040 ELNP15502 786 aa11.6□□□□□ -0.55
CLN3-220ENST00000566040 SNAP25P60880 206 aa11.6□□□□□ -0.55
CLN3-220ENST00000566040 ZNF543Q08ER8 600 aa11.6□□□□□ -0.55
CLN3-220ENST00000566040 IRF5Q13568 498 aa11.6□□□□□ -0.55
CLN3-220ENST00000566040 GRB14Q14449 540 aa11.6□□□□□ -0.55
CLN3-220ENST00000566040 PKN2Q16513 984 aaKnown RBP11.6□□□□□ -0.55
CLN3-220ENST00000566040 TSGA10IPQ3SY00 556 aa11.6□□□□□ -0.55
CLN3-220ENST00000566040 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.6□□□□□ -0.55
CLN3-220ENST00000566040 SH3TC2Q8TF17 1288 aa11.6□□□□□ -0.55
CLN3-220ENST00000566040 DCAF4Q8WV16 495 aa11.6□□□□□ -0.55
CLN3-220ENST00000566040 TTC14Q96N46 770 aa11.6□□□□□ -0.55
CLN3-220ENST00000566040 KRT23Q9C075 422 aa11.6□□□□□ -0.55
CLN3-220ENST00000566040 LY9Q9HBG7 655 aa11.6□□□□□ -0.55
CLN3-220ENST00000566040 PRR12Q9ULL5 1215 aa11.6□□□□□ -0.55
CLN3-220ENST00000566040 ASTN1O14525 1302 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms