RNA–Protein interactions for RNA: ENST00000565545.1

CSPG4P13-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 13, humanhuman

TSL 5

Gene CSPG4P13, Length 657 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P13-201ENST00000565545 INHBEP58166 350 aa22.17■■□□□ 1.14
CSPG4P13-201ENST00000565545 GRM4Q14833 912 aa22.17■■□□□ 1.14
CSPG4P13-201ENST00000565545 DDX11Q96FC9 970 aa22.17■■□□□ 1.14
CSPG4P13-201ENST00000565545 CFHR5Q9BXR6 569 aa22.17■■□□□ 1.14
CSPG4P13-201ENST00000565545 GINM1Q9NU53 330 aa22.17■■□□□ 1.14
CSPG4P13-201ENST00000565545 NYAP2Q9P242 653 aa22.17■■□□□ 1.14
CSPG4P13-201ENST00000565545 ORC3Q9UBD5 711 aaPredicted RBP22.17■■□□□ 1.14
CSPG4P13-201ENST00000565545 MYH4Q9Y623 1939 aa22.17■■□□□ 1.14
CSPG4P13-201ENST00000565545 FAM196BA6NMK8 535 aa22.16■■□□□ 1.14
CSPG4P13-201ENST00000565545 FMNL1O95466 1100 aaPredicted RBP22.16■■□□□ 1.14
CSPG4P13-201ENST00000565545 SSRP1Q08945 709 aaKnown RBP22.16■■□□□ 1.14
CSPG4P13-201ENST00000565545 SUPT20HL1Q3ZLR7 823 aa22.16■■□□□ 1.14
CSPG4P13-201ENST00000565545 TRIM22Q8IYM9 498 aa22.16■■□□□ 1.14
CSPG4P13-201ENST00000565545 WASF1Q92558 559 aa22.16■■□□□ 1.14
CSPG4P13-201ENST00000565545 TNPO1Q92973 898 aaKnown RBP22.16■■□□□ 1.14
CSPG4P13-201ENST00000565545 MKL1Q969V6 931 aa22.16■■□□□ 1.14
CSPG4P13-201ENST00000565545 LZTS2Q9BRK4 669 aa22.16■■□□□ 1.14
CSPG4P13-201ENST00000565545 SYNPO2Q9UMS6 1093 aa22.16■■□□□ 1.14
CSPG4P13-201ENST00000565545 ZDHHC9Q9Y397 364 aa22.16■■□□□ 1.14
CSPG4P13-201ENST00000565545 ZSCAN22P10073 491 aaPredicted RBP22.15■■□□□ 1.14
CSPG4P13-201ENST00000565545 FDPSP14324 419 aaKnown RBP22.15■■□□□ 1.14
CSPG4P13-201ENST00000565545 PKP1Q13835 747 aa22.15■■□□□ 1.14
CSPG4P13-201ENST00000565545 DCAF15Q66K64 600 aa22.15■■□□□ 1.14
CSPG4P13-201ENST00000565545 IFNL1Q8IU54 200 aa22.15■■□□□ 1.14
CSPG4P13-201ENST00000565545 RNF26Q9BY78 433 aaPredicted RBP22.15■■□□□ 1.14
CSPG4P13-201ENST00000565545 TNRC18O15417 2968 aaPredicted RBP22.15■■□□□ 1.14
CSPG4P13-201ENST00000565545 SLURP2P0DP57 97 aa22.14■■□□□ 1.13
CSPG4P13-201ENST00000565545 CLEC17AQ6ZS10 378 aa22.14■■□□□ 1.13
CSPG4P13-201ENST00000565545 TMTC3Q6ZXV5 915 aa22.14■■□□□ 1.13
CSPG4P13-201ENST00000565545 CLMNQ96JQ2 1002 aa22.14■■□□□ 1.13
CSPG4P13-201ENST00000565545 RBM27Q9P2N5 1060 aaKnown RBP22.14■■□□□ 1.13
CSPG4P13-201ENST00000565545 CLIP2Q9UDT6 1046 aa22.14■■□□□ 1.13
CSPG4P13-201ENST00000565545 MTMR6Q9Y217 621 aa22.14■■□□□ 1.13
CSPG4P13-201ENST00000565545 TRIM17Q9Y577 477 aa22.14■■□□□ 1.13
CSPG4P13-201ENST00000565545 MYH6P13533 1939 aa22.14■■□□□ 1.13
CSPG4P13-201ENST00000565545 ZBTB48P10074 688 aaPredicted RBP22.13■■□□□ 1.13
CSPG4P13-201ENST00000565545 SMARCA1P28370 1054 aa22.13■■□□□ 1.13
CSPG4P13-201ENST00000565545 NBPF11Q86T75 865 aa22.13■■□□□ 1.13
CSPG4P13-201ENST00000565545 WNK4Q96J92 1243 aa22.13■■□□□ 1.13
CSPG4P13-201ENST00000565545 GBP4Q96PP9 640 aa22.13■■□□□ 1.13
CSPG4P13-201ENST00000565545 ATP6V1DQ9Y5K8 247 aa22.13■■□□□ 1.13
CSPG4P13-201ENST00000565545 PALM3A6NDB9 673 aaPredicted RBP22.12■■□□□ 1.13
CSPG4P13-201ENST00000565545 H3BQV1 296 aa22.12■■□□□ 1.13
CSPG4P13-201ENST00000565545 PRPF3O43395 683 aaKnown RBP22.12■■□□□ 1.13
CSPG4P13-201ENST00000565545 GDF11O95390 407 aa22.12■■□□□ 1.13
CSPG4P13-201ENST00000565545 DEXIO95424 95 aa22.12■■□□□ 1.13
CSPG4P13-201ENST00000565545 GH2P01242 217 aa22.12■■□□□ 1.13
CSPG4P13-201ENST00000565545 PARP1P09874 1014 aaKnown RBP22.12■■□□□ 1.13
CSPG4P13-201ENST00000565545 GUCY1A2P33402 732 aa22.12■■□□□ 1.13
CSPG4P13-201ENST00000565545 CAP2P40123 477 aa22.12■■□□□ 1.13
CSPG4P13-201ENST00000565545 AKAP17AQ02040 695 aaKnown RBP22.12■■□□□ 1.13
CSPG4P13-201ENST00000565545 ICA1Q05084 483 aa22.12■■□□□ 1.13
CSPG4P13-201ENST00000565545 SEPT2Q15019 361 aa22.12■■□□□ 1.13
CSPG4P13-201ENST00000565545 MAP3K11Q16584 847 aa22.12■■□□□ 1.13
CSPG4P13-201ENST00000565545 OTUD7BQ6GQQ9 843 aa22.12■■□□□ 1.13
CSPG4P13-201ENST00000565545 MIGA2Q7L4E1 593 aa22.12■■□□□ 1.13
CSPG4P13-201ENST00000565545 CDAN1Q8IWY9 1227 aa22.12■■□□□ 1.13
CSPG4P13-201ENST00000565545 SLC26A6Q9BXS9 759 aa22.12■■□□□ 1.13
CSPG4P13-201ENST00000565545 VPS37CA5D8V6 355 aaPredicted RBP22.11■■□□□ 1.13
CSPG4P13-201ENST00000565545 EEF2P13639 858 aaKnown RBP22.11■■□□□ 1.13
CSPG4P13-201ENST00000565545 IREB2P48200 963 aaKnown RBP22.11■■□□□ 1.13
CSPG4P13-201ENST00000565545 FUT2Q10981 343 aa22.11■■□□□ 1.13
CSPG4P13-201ENST00000565545 RRP1BQ14684 758 aaKnown RBP22.11■■□□□ 1.13
CSPG4P13-201ENST00000565545 PHKBQ93100 1093 aa22.11■■□□□ 1.13
CSPG4P13-201ENST00000565545 MAD2L2Q9UI95 211 aa22.11■■□□□ 1.13
CSPG4P13-201ENST00000565545 F13A1P00488 732 aa22.1■■□□□ 1.13
CSPG4P13-201ENST00000565545 ASNSP08243 561 aa22.1■■□□□ 1.13
CSPG4P13-201ENST00000565545 SNHG28P0DPA3 235 aa22.1■■□□□ 1.13
CSPG4P13-201ENST00000565545 ASPRV1Q53RT3 343 aa22.1■■□□□ 1.13
CSPG4P13-201ENST00000565545 NBPF12Q5TAG4 269 aaPredicted RBP22.1■■□□□ 1.13
CSPG4P13-201ENST00000565545 C8orf76Q96K31 380 aa22.1■■□□□ 1.13
CSPG4P13-201ENST00000565545 ALG1Q9BT22 464 aa22.1■■□□□ 1.13
CSPG4P13-201ENST00000565545 ZNF341Q9BYN7 854 aa22.1■■□□□ 1.13
CSPG4P13-201ENST00000565545 ZBTB21Q9ULJ3 1066 aa22.1■■□□□ 1.13
CSPG4P13-201ENST00000565545 ATAD5Q96QE3 1844 aa22.1■■□□□ 1.13
CSPG4P13-201ENST00000565545 UNCXA6NJT0 531 aa22.09■■□□□ 1.13
CSPG4P13-201ENST00000565545 PHF20L1A8MW92 1017 aa22.09■■□□□ 1.13
CSPG4P13-201ENST00000565545 IGF2BP3O00425 579 aaKnown RBP eCLIP22.09■■□□□ 1.13
CSPG4P13-201ENST00000565545 CTNND1O60716 968 aaKnown RBP22.09■■□□□ 1.13
CSPG4P13-201ENST00000565545 DTNBO60941 627 aa22.09■■□□□ 1.13
CSPG4P13-201ENST00000565545 PLEKHA8P1O95397 391 aa22.09■■□□□ 1.13
CSPG4P13-201ENST00000565545 ARHGEF10LQ9HCE6 1279 aa22.09■■□□□ 1.13
CSPG4P13-201ENST00000565545 CNTNAP5Q8WYK1 1306 aa22.08■■□□□ 1.13
CSPG4P13-201ENST00000565545 PDHBP11177 359 aa22.08■■□□□ 1.13
CSPG4P13-201ENST00000565545 ATP2B2Q01814 1243 aa22.08■■□□□ 1.13
CSPG4P13-201ENST00000565545 OTOP1Q7RTM1 612 aa22.08■■□□□ 1.13
CSPG4P13-201ENST00000565545 LRRC47Q8N1G4 583 aaKnown RBP22.08■■□□□ 1.13
CSPG4P13-201ENST00000565545 SRBD1Q8N5C6 995 aaKnown RBP22.08■■□□□ 1.13
CSPG4P13-201ENST00000565545 GMCL1P1Q8NEA9 526 aa22.08■■□□□ 1.13
CSPG4P13-201ENST00000565545 FBXO18Q8NFZ0 1043 aa22.08■■□□□ 1.13
CSPG4P13-201ENST00000565545 DCAF4Q8WV16 495 aa22.08■■□□□ 1.13
CSPG4P13-201ENST00000565545 ERO1AQ96HE7 468 aa22.08■■□□□ 1.13
CSPG4P13-201ENST00000565545 ZSCAN16Q9H4T2 348 aaPredicted RBP22.08■■□□□ 1.13
CSPG4P13-201ENST00000565545 ZNF112Q9UJU3 913 aa22.08■■□□□ 1.13
CSPG4P13-201ENST00000565545 USP2O75604 605 aaPredicted RBP22.07■■□□□ 1.12
CSPG4P13-201ENST00000565545 JAG1P78504 1218 aa22.07■■□□□ 1.12
CSPG4P13-201ENST00000565545 TRIM29Q14134 588 aa22.07■■□□□ 1.12
CSPG4P13-201ENST00000565545 GPATCH4Q5T3I0 446 aaKnown RBP22.07■■□□□ 1.12
CSPG4P13-201ENST00000565545 CLEC10AQ8IUN9 316 aa22.07■■□□□ 1.12
CSPG4P13-201ENST00000565545 SIAH1Q8IUQ4 282 aa22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms