RNA–Protein interactions for RNA: ENST00000564899.1

SF3B3-205, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-205ENST00000564899 RXRAP19793 462 aa12.94□□□□□ -0.34
SF3B3-205ENST00000564899 RCAN1P53805 252 aa12.94□□□□□ -0.34
SF3B3-205ENST00000564899 INHBEP58166 350 aa12.94□□□□□ -0.34
SF3B3-205ENST00000564899 CCT2P78371 535 aaKnown RBP12.94□□□□□ -0.34
SF3B3-205ENST00000564899 SHROOM1Q2M3G4 852 aaPredicted RBP12.94□□□□□ -0.34
SF3B3-205ENST00000564899 CHRDL2Q6WN34 429 aa12.94□□□□□ -0.34
SF3B3-205ENST00000564899 CLEC10AQ8IUN9 316 aa12.94□□□□□ -0.34
SF3B3-205ENST00000564899 FAM43AQ8N2R8 423 aa12.94□□□□□ -0.34
SF3B3-205ENST00000564899 NUP133Q8WUM0 1156 aa12.94□□□□□ -0.34
SF3B3-205ENST00000564899 OPTNQ96CV9 577 aa12.94□□□□□ -0.34
SF3B3-205ENST00000564899 SHISA4Q96DD7 197 aa12.94□□□□□ -0.34
SF3B3-205ENST00000564899 ZNF341Q9BYN7 854 aa12.94□□□□□ -0.34
SF3B3-205ENST00000564899 MTMR4Q9NYA4 1195 aa12.94□□□□□ -0.34
SF3B3-205ENST00000564899 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.94□□□□□ -0.34
SF3B3-205ENST00000564899 UNC80Q8N2C7 3258 aa12.93□□□□□ -0.34
SF3B3-205ENST00000564899 TTLL1O95922 423 aa12.93□□□□□ -0.34
SF3B3-205ENST00000564899 TOP1P11387 765 aaKnown RBP12.93□□□□□ -0.34
SF3B3-205ENST00000564899 NOVP48745 357 aa12.93□□□□□ -0.34
SF3B3-205ENST00000564899 JAG1P78504 1218 aa12.93□□□□□ -0.34
SF3B3-205ENST00000564899 ICA1Q05084 483 aa12.93□□□□□ -0.34
SF3B3-205ENST00000564899 SEPT2Q15019 361 aa12.93□□□□□ -0.34
SF3B3-205ENST00000564899 CCDC144CPQ8IYA2 1237 aa12.93□□□□□ -0.34
SF3B3-205ENST00000564899 PNMA1Q8ND90 353 aa12.93□□□□□ -0.34
SF3B3-205ENST00000564899 CHMP4CQ96CF2 233 aa12.93□□□□□ -0.34
SF3B3-205ENST00000564899 TMEM47Q9BQJ4 181 aa12.93□□□□□ -0.34
SF3B3-205ENST00000564899 KANSL2Q9H9L4 492 aa12.93□□□□□ -0.34
SF3B3-205ENST00000564899 NCOA5Q9HCD5 579 aaKnown RBP12.93□□□□□ -0.34
SF3B3-205ENST00000564899 ZBTB21Q9ULJ3 1066 aa12.93□□□□□ -0.34
SF3B3-205ENST00000564899 NID2Q14112 1375 aa12.93□□□□□ -0.34
SF3B3-205ENST00000564899 PHF20L1A8MW92 1017 aa12.92□□□□□ -0.34
SF3B3-205ENST00000564899 CPLX1O14810 134 aa12.92□□□□□ -0.34
SF3B3-205ENST00000564899 DHX16O60231 1041 aaKnown RBP12.92□□□□□ -0.34
SF3B3-205ENST00000564899 PPP1R12BO60237 982 aaPredicted RBP12.92□□□□□ -0.34
SF3B3-205ENST00000564899 CALM1P0DP23 149 aa12.92□□□□□ -0.34
SF3B3-205ENST00000564899 CALM2P0DP24 149 aa12.92□□□□□ -0.34
SF3B3-205ENST00000564899 CALM3P0DP25 149 aa12.92□□□□□ -0.34
SF3B3-205ENST00000564899 CTGFP29279 349 aa12.92□□□□□ -0.34
SF3B3-205ENST00000564899 GUCY1A2P33402 732 aa12.92□□□□□ -0.34
SF3B3-205ENST00000564899 CAP2P40123 477 aa12.92□□□□□ -0.34
SF3B3-205ENST00000564899 ATP2B2Q01814 1243 aa12.92□□□□□ -0.34
SF3B3-205ENST00000564899 RAB3GAP1Q15042 981 aa12.92□□□□□ -0.34
SF3B3-205ENST00000564899 RTN1Q16799 776 aa12.92□□□□□ -0.34
SF3B3-205ENST00000564899 SLC9C1Q4G0N8 1177 aa12.92□□□□□ -0.34
SF3B3-205ENST00000564899 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.92□□□□□ -0.34
SF3B3-205ENST00000564899 LRRC47Q8N1G4 583 aaKnown RBP12.92□□□□□ -0.34
SF3B3-205ENST00000564899 RBM27Q9P2N5 1060 aaKnown RBP12.92□□□□□ -0.34
SF3B3-205ENST00000564899 CLIP2Q9UDT6 1046 aa12.92□□□□□ -0.34
SF3B3-205ENST00000564899 SMC3Q9UQE7 1217 aa12.92□□□□□ -0.34
SF3B3-205ENST00000564899 ASNSP08243 561 aa12.91□□□□□ -0.34
SF3B3-205ENST00000564899 EEF2P13639 858 aaKnown RBP12.91□□□□□ -0.34
SF3B3-205ENST00000564899 TROAPQ12815 778 aa12.91□□□□□ -0.34
SF3B3-205ENST00000564899 VGLL4Q14135 290 aa12.91□□□□□ -0.34
SF3B3-205ENST00000564899 MTFR1Q15390 333 aa12.91□□□□□ -0.34
SF3B3-205ENST00000564899 CPLX2Q6PUV4 134 aaKnown RBP12.91□□□□□ -0.34
SF3B3-205ENST00000564899 CTCFLQ8NI51 663 aaPredicted RBP12.91□□□□□ -0.34
SF3B3-205ENST00000564899 LLPHQ9BRT6 129 aaKnown RBP12.91□□□□□ -0.34
SF3B3-205ENST00000564899 TMEM106CQ9BVX2 250 aa12.91□□□□□ -0.34
SF3B3-205ENST00000564899 CWC22Q9HCG8 908 aaKnown RBP12.91□□□□□ -0.34
SF3B3-205ENST00000564899 GINM1Q9NU53 330 aa12.91□□□□□ -0.34
SF3B3-205ENST00000564899 NYAP2Q9P242 653 aa12.91□□□□□ -0.34
SF3B3-205ENST00000564899 MYH8P13535 1937 aa12.91□□□□□ -0.34
SF3B3-205ENST00000564899 GREB1LQ9C091 1923 aaPredicted RBP12.91□□□□□ -0.34
SF3B3-205ENST00000564899 CCL15-CCL14A0A0B4J2E2 113 aa12.9□□□□□ -0.34
SF3B3-205ENST00000564899 CCDC196A0A1B0GTZ2 297 aa12.9□□□□□ -0.34
SF3B3-205ENST00000564899 PTPDC1A2A3K4 754 aa12.9□□□□□ -0.34
SF3B3-205ENST00000564899 JAK2O60674 1132 aa12.9□□□□□ -0.34
SF3B3-205ENST00000564899 CTNND1O60716 968 aaKnown RBP12.9□□□□□ -0.34
SF3B3-205ENST00000564899 CDC27P30260 824 aa12.9□□□□□ -0.34
SF3B3-205ENST00000564899 INPP5BP32019 993 aa12.9□□□□□ -0.34
SF3B3-205ENST00000564899 IREB2P48200 963 aaKnown RBP12.9□□□□□ -0.34
SF3B3-205ENST00000564899 PPP2R5BQ15173 497 aa12.9□□□□□ -0.34
SF3B3-205ENST00000564899 TAF1CQ15572 869 aaPredicted RBP12.9□□□□□ -0.34
SF3B3-205ENST00000564899 CCL15Q16663 113 aa12.9□□□□□ -0.34
SF3B3-205ENST00000564899 ANKRD13AQ8IZ07 590 aa12.9□□□□□ -0.34
SF3B3-205ENST00000564899 FANCBQ8NB91 859 aa12.9□□□□□ -0.34
SF3B3-205ENST00000564899 NSUN7Q8NE18 718 aaKnown RBP12.9□□□□□ -0.34
SF3B3-205ENST00000564899 WRNIP1Q96S55 665 aa12.9□□□□□ -0.34
SF3B3-205ENST00000564899 RBM28Q9NW13 759 aaKnown RBP12.9□□□□□ -0.34
SF3B3-205ENST00000564899 ZNF112Q9UJU3 913 aa12.9□□□□□ -0.34
SF3B3-205ENST00000564899 MTMR7Q9Y216 660 aa12.9□□□□□ -0.34
SF3B3-205ENST00000564899 DTNBO60941 627 aa12.89□□□□□ -0.35
SF3B3-205ENST00000564899 CDKL5O76039 1030 aa12.89□□□□□ -0.35
SF3B3-205ENST00000564899 CTDNEP1O95476 244 aa12.89□□□□□ -0.35
SF3B3-205ENST00000564899 GJB2P29033 226 aa12.89□□□□□ -0.35
SF3B3-205ENST00000564899 KIF5BP33176 963 aa12.89□□□□□ -0.35
SF3B3-205ENST00000564899 ADD1P35611 737 aaKnown RBP12.89□□□□□ -0.35
SF3B3-205ENST00000564899 GRM4Q14833 912 aa12.89□□□□□ -0.35
SF3B3-205ENST00000564899 SCYL3Q8IZE3 742 aa12.89□□□□□ -0.35
SF3B3-205ENST00000564899 MKL1Q969V6 931 aa12.89□□□□□ -0.35
SF3B3-205ENST00000564899 MAP3K14Q99558 947 aa12.89□□□□□ -0.35
SF3B3-205ENST00000564899 ARHGEF10LQ9HCE6 1279 aa12.89□□□□□ -0.35
SF3B3-205ENST00000564899 FAM217BQ9NTX9 383 aaPredicted RBP12.89□□□□□ -0.35
SF3B3-205ENST00000564899 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.89□□□□□ -0.35
SF3B3-205ENST00000564899 VCANP13611 3396 aa12.88□□□□□ -0.35
SF3B3-205ENST00000564899 HMGN5P82970 282 aaKnown RBP12.88□□□□□ -0.35
SF3B3-205ENST00000564899 RASGRP2Q7LDG7 609 aa12.88□□□□□ -0.35
SF3B3-205ENST00000564899 SIAH1Q8IUQ4 282 aa12.88□□□□□ -0.35
SF3B3-205ENST00000564899 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.88□□□□□ -0.35
SF3B3-205ENST00000564899 SMARCC2Q8TAQ2 1214 aa12.88□□□□□ -0.35
SF3B3-205ENST00000564899 DDX11Q96FC9 970 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms