RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 KCNA4P22459 653 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 RAD23BP54727 409 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 SOGA3Q5TF21 947 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 BHMTQ93088 406 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 CARD9Q9H257 536 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 CCDC87Q9NVE4 849 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 EPN1Q9Y6I3 576 aaPredicted RBP6.87□□□□□ -1.31
CLK3-212ENST00000563418 SPAG7O75391 227 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 TNIP1Q15025 636 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 WDR93Q6P2C0 686 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 WDR75Q8IWA0 830 aaKnown RBP6.87□□□□□ -1.31
CLK3-212ENST00000563418 ATP11CQ8NB49 1132 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 ZKSCAN4Q969J2 545 aaPredicted RBP6.87□□□□□ -1.31
CLK3-212ENST00000563418 FAM167BQ9BTA0 163 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 RNF41Q9H4P4 317 aaPredicted RBP6.87□□□□□ -1.31
CLK3-212ENST00000563418 ANKRD65E5RJM6 399 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 MMEP08473 750 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 FAM200BP0CF97 657 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 MDH1P40925 334 aaKnown RBP6.87□□□□□ -1.31
CLK3-212ENST00000563418 MAP3K12Q12852 859 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 NDUFA5Q16718 116 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 TMEM259Q4ZIN3 620 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 SCYL3Q8IZE3 742 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 UBAP1Q9NZ09 502 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 PLCD1P51178 756 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 CCT2P78371 535 aaKnown RBP6.87□□□□□ -1.31
CLK3-212ENST00000563418 GUCY1B3Q02153 619 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 TMEM154Q6P9G4 183 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 C15orf41Q9Y2V0 281 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.87□□□□□ -1.31
CLK3-212ENST00000563418 ZWINTO95229 277 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 GUCY2DQ02846 1103 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 MCF2L2Q86YR7 1114 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 RHBDL2Q9NX52 303 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 VPS41P49754 854 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 DHX32Q7L7V1 743 aaKnown RBP6.87□□□□□ -1.31
CLK3-212ENST00000563418 NLRP7Q8WX94 980 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 CLMNQ96JQ2 1002 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 INTUQ9ULD6 942 aa6.87□□□□□ -1.31
CLK3-212ENST00000563418 GOLGA8QA0A0J9YX86 632 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 GOLGA8OA6NCC3 632 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 GOLGA8NF8WBI6 632 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 NR1H3Q13133 447 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 IL17RAQ96F46 866 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.86□□□□□ -1.31
CLK3-212ENST00000563418 SNX14Q9Y5W7 946 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 PIK3R4Q99570 1358 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 S100A1P23297 94 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 CMA1P23946 247 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 LSP1P33241 339 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 GCLCP48506 637 aaPredicted RBP6.86□□□□□ -1.31
CLK3-212ENST00000563418 SNX1Q13596 522 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 ADRM1Q16186 407 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 MFSD4BQ5TF39 518 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 RIC3Q7Z5B4 369 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 CROCCP3Q8IVE0 287 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 SYTL4Q96C24 671 aaPredicted RBP6.86□□□□□ -1.31
CLK3-212ENST00000563418 FTOQ9C0B1 505 aaKnown RBP eCLIP6.86□□□□□ -1.31
CLK3-212ENST00000563418 EXOC5O00471 708 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 MLH1P40692 756 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 NDE1Q9NXR1 346 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 SEPT3Q9UH03 358 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 ZBTB7BO15156 539 aaPredicted RBP6.86□□□□□ -1.31
CLK3-212ENST00000563418 S100BP04271 92 aaPredicted RBP6.86□□□□□ -1.31
CLK3-212ENST00000563418 UBA7P41226 1012 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 ITIH4Q14624 930 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 HSP90AA4PQ58FG1 418 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 TMTC2Q8N394 836 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 GID8Q9NWU2 228 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 SUCLA2Q9P2R7 463 aaPredicted RBP6.86□□□□□ -1.31
CLK3-212ENST00000563418 WDR37Q9Y2I8 494 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 DYTNA2CJ06 578 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 HEXIM1O94992 359 aaKnown RBP6.86□□□□□ -1.31
CLK3-212ENST00000563418 CTNNA2P26232 953 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 CDR2Q01850 454 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 KDM7AQ6ZMT4 941 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 TTC5Q8N0Z6 440 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 LRRC43Q8N309 656 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 JARID2Q92833 1246 aaPredicted RBP6.86□□□□□ -1.31
CLK3-212ENST00000563418 ALG1Q9BT22 464 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 RAD54L2Q9Y4B4 1467 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 ZFYVE9O95405 1425 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 TRIM75PA6NK02 468 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 MYO1FO00160 1098 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 MAN1A1P33908 653 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 OCA2Q04671 838 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 NAA35Q5VZE5 725 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 TERB1Q8NA31 727 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 BBOF1Q8ND07 529 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 ABCF2Q9UG63 623 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 TMCO1Q9UM00 188 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 ARHGEF9O43307 516 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 GHRP10912 638 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 SERPINB3P29508 390 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 MARCKSP29966 332 aaPredicted RBP6.86□□□□□ -1.31
CLK3-212ENST00000563418 TTC6Q86TZ1 520 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 ECT2Q9H8V3 914 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 ATAD2BQ9ULI0 1458 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 SEMA3EO15041 775 aa6.86□□□□□ -1.31
CLK3-212ENST00000563418 TTF1Q15361 905 aaPredicted RBP6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms