RNA–Protein interactions for RNA: ENST00000563396.1

SMPD3-204, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-204ENST00000563396 ALX1Q15699 326 aa16.75■□□□□ 0.27
SMPD3-204ENST00000563396 VPS53Q5VIR6 699 aa16.75■□□□□ 0.27
SMPD3-204ENST00000563396 B4GALNT3Q6L9W6 998 aa16.75■□□□□ 0.27
SMPD3-204ENST00000563396 REPS2Q8NFH8 660 aa16.75■□□□□ 0.27
SMPD3-204ENST00000563396 NEDD1Q8NHV4 660 aa16.75■□□□□ 0.27
SMPD3-204ENST00000563396 MKL1Q969V6 931 aa16.75■□□□□ 0.27
SMPD3-204ENST00000563396 CEP95Q96GE4 821 aa16.75■□□□□ 0.27
SMPD3-204ENST00000563396 FAM227BQ96M60 508 aa16.75■□□□□ 0.27
SMPD3-204ENST00000563396 HMX1Q9NP08 348 aaPredicted RBP16.75■□□□□ 0.27
SMPD3-204ENST00000563396 MTMR4Q9NYA4 1195 aa16.75■□□□□ 0.27
SMPD3-204ENST00000563396 PPP1R9AQ9ULJ8 1098 aa16.75■□□□□ 0.27
SMPD3-204ENST00000563396 IVNS1ABPQ9Y6Y0 642 aa16.75■□□□□ 0.27
SMPD3-204ENST00000563396 NDUFB10O96000 172 aa16.74■□□□□ 0.27
SMPD3-204ENST00000563396 SLC3A2P08195 630 aaKnown RBP16.74■□□□□ 0.27
SMPD3-204ENST00000563396 PRKAR2AP13861 404 aaKnown RBP16.74■□□□□ 0.27
SMPD3-204ENST00000563396 ATP2B2Q01814 1243 aa16.74■□□□□ 0.27
SMPD3-204ENST00000563396 CCL14Q16627 93 aa16.74■□□□□ 0.27
SMPD3-204ENST00000563396 MCMDC2Q4G0Z9 681 aa16.74■□□□□ 0.27
SMPD3-204ENST00000563396 ZNF444Q8N0Y2 327 aaPredicted RBP16.74■□□□□ 0.27
SMPD3-204ENST00000563396 STK11IPQ8N1F8 1099 aa16.74■□□□□ 0.27
SMPD3-204ENST00000563396 ANKLE1Q8NAG6 615 aa16.74■□□□□ 0.27
SMPD3-204ENST00000563396 GMCL1P1Q8NEA9 526 aa16.74■□□□□ 0.27
SMPD3-204ENST00000563396 MROH8Q9H579 483 aa16.74■□□□□ 0.27
SMPD3-204ENST00000563396 FBXO28Q9NVF7 368 aa16.74■□□□□ 0.27
SMPD3-204ENST00000563396 ZNF214Q9UL59 606 aaPredicted RBP16.74■□□□□ 0.27
SMPD3-204ENST00000563396 CCDC171Q6TFL3 1326 aa16.73■□□□□ 0.27
SMPD3-204ENST00000563396 F5H6K3 240 aa16.73■□□□□ 0.27
SMPD3-204ENST00000563396 STRNO43815 780 aa16.73■□□□□ 0.27
SMPD3-204ENST00000563396 TTLL1O95922 423 aa16.73■□□□□ 0.27
SMPD3-204ENST00000563396 FGRP09769 529 aa16.73■□□□□ 0.27
SMPD3-204ENST00000563396 ERCC3P19447 782 aa16.73■□□□□ 0.27
SMPD3-204ENST00000563396 KLRC3Q07444 240 aa16.73■□□□□ 0.27
SMPD3-204ENST00000563396 NMIQ13287 307 aaPredicted RBP16.73■□□□□ 0.27
SMPD3-204ENST00000563396 TMEM132BQ14DG7 1078 aa16.73■□□□□ 0.27
SMPD3-204ENST00000563396 FAM83BQ5T0W9 1011 aa16.73■□□□□ 0.27
SMPD3-204ENST00000563396 ZNF589Q86UQ0 364 aaPredicted RBP16.73■□□□□ 0.27
SMPD3-204ENST00000563396 ABRAQ8N0Z2 381 aa16.73■□□□□ 0.27
SMPD3-204ENST00000563396 CWC22Q9HCG8 908 aaKnown RBP16.73■□□□□ 0.27
SMPD3-204ENST00000563396 VWA5AO00534 786 aa16.72■□□□□ 0.27
SMPD3-204ENST00000563396 TSPY3P0CV98 308 aa16.72■□□□□ 0.27
SMPD3-204ENST00000563396 TSPY8P0CW00 308 aa16.72■□□□□ 0.27
SMPD3-204ENST00000563396 NOVP48745 357 aa16.72■□□□□ 0.27
SMPD3-204ENST00000563396 CACNB2Q08289 660 aaPredicted RBP16.72■□□□□ 0.27
SMPD3-204ENST00000563396 FLRT1Q9NZU1 646 aa16.72■□□□□ 0.27
SMPD3-204ENST00000563396 OGDHLQ9ULD0 1010 aa16.72■□□□□ 0.27
SMPD3-204ENST00000563396 TRIM6-TRIM34B2RNG4 842 aa16.71■□□□□ 0.27
SMPD3-204ENST00000563396 ORC4O43929 436 aa16.71■□□□□ 0.27
SMPD3-204ENST00000563396 SLC25A27O95847 323 aa16.71■□□□□ 0.27
SMPD3-204ENST00000563396 HSPD1P10809 573 aaKnown RBP16.71■□□□□ 0.27
SMPD3-204ENST00000563396 ADORA2AP29274 412 aa16.71■□□□□ 0.27
SMPD3-204ENST00000563396 WDR78Q5VTH9 848 aa16.71■□□□□ 0.27
SMPD3-204ENST00000563396 RIOX2Q8IUF8 465 aa16.71■□□□□ 0.27
SMPD3-204ENST00000563396 NPLOC4Q8TAT6 608 aa16.71■□□□□ 0.27
SMPD3-204ENST00000563396 NUP88Q99567 741 aaPredicted RBP16.71■□□□□ 0.27
SMPD3-204ENST00000563396 SLF1Q9BQI6 1058 aa16.71■□□□□ 0.27
SMPD3-204ENST00000563396 TACC3Q9Y6A5 838 aa16.71■□□□□ 0.27
SMPD3-204ENST00000563396 CEP290O15078 2479 aa16.7■□□□□ 0.26
SMPD3-204ENST00000563396 ATP2A1O14983 1001 aa16.7■□□□□ 0.26
SMPD3-204ENST00000563396 SDSP20132 328 aa16.7■□□□□ 0.26
SMPD3-204ENST00000563396 COPB2P35606 906 aa16.7■□□□□ 0.26
SMPD3-204ENST00000563396 MNX1P50219 401 aaPredicted RBP16.7■□□□□ 0.26
SMPD3-204ENST00000563396 TFAP4Q01664 338 aa16.7■□□□□ 0.26
SMPD3-204ENST00000563396 PPP4R3BQ5MIZ7 849 aa16.7■□□□□ 0.26
SMPD3-204ENST00000563396 OLFML2BQ68BL8 750 aa16.7■□□□□ 0.26
SMPD3-204ENST00000563396 LRRC47Q8N1G4 583 aaKnown RBP16.7■□□□□ 0.26
SMPD3-204ENST00000563396 HTATIP2Q9BUP3 242 aa16.7■□□□□ 0.26
SMPD3-204ENST00000563396 CLIP2Q9UDT6 1046 aa16.7■□□□□ 0.26
SMPD3-204ENST00000563396 FGAP02671 866 aa16.69■□□□□ 0.26
SMPD3-204ENST00000563396 CTDSPL2Q05D32 466 aa16.69■□□□□ 0.26
SMPD3-204ENST00000563396 FAM47AQ5JRC9 791 aa16.69■□□□□ 0.26
SMPD3-204ENST00000563396 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.69■□□□□ 0.26
SMPD3-204ENST00000563396 RILPL2Q969X0 211 aa16.69■□□□□ 0.26
SMPD3-204ENST00000563396 GMCL1Q96IK5 515 aa16.69■□□□□ 0.26
SMPD3-204ENST00000563396 TEX13BQ9BXU2 312 aa16.69■□□□□ 0.26
SMPD3-204ENST00000563396 IL17RBQ9NRM6 502 aa16.69■□□□□ 0.26
SMPD3-204ENST00000563396 LRRC37A2A6NM11 1700 aa16.69■□□□□ 0.26
SMPD3-204ENST00000563396 TSPY2A6NKD2 308 aa16.68■□□□□ 0.26
SMPD3-204ENST00000563396 TFRCP02786 760 aaKnown RBP16.68■□□□□ 0.26
SMPD3-204ENST00000563396 PCP11498 1178 aaKnown RBP16.68■□□□□ 0.26
SMPD3-204ENST00000563396 CYBAP13498 195 aa16.68■□□□□ 0.26
SMPD3-204ENST00000563396 PDE4AP27815 886 aa16.68■□□□□ 0.26
SMPD3-204ENST00000563396 CCND3P30281 292 aaPredicted RBP16.68■□□□□ 0.26
SMPD3-204ENST00000563396 MFAP1P55081 439 aaKnown RBP16.68■□□□□ 0.26
SMPD3-204ENST00000563396 PLS1Q14651 629 aa16.68■□□□□ 0.26
SMPD3-204ENST00000563396 MFSD14CQ5VZR4 134 aa16.68■□□□□ 0.26
SMPD3-204ENST00000563396 LHX8Q68G74 356 aa16.68■□□□□ 0.26
SMPD3-204ENST00000563396 NCAPG2Q86XI2 1143 aa16.68■□□□□ 0.26
SMPD3-204ENST00000563396 PRPF38AQ8NAV1 312 aaKnown RBP16.68■□□□□ 0.26
SMPD3-204ENST00000563396 HIP1O00291 1037 aa16.67■□□□□ 0.26
SMPD3-204ENST00000563396 RAD21O60216 631 aa16.67■□□□□ 0.26
SMPD3-204ENST00000563396 COBLO75128 1261 aa16.67■□□□□ 0.26
SMPD3-204ENST00000563396 STAT3P40763 770 aa16.67■□□□□ 0.26
SMPD3-204ENST00000563396 NECAB2Q7Z6G3 386 aa16.67■□□□□ 0.26
SMPD3-204ENST00000563396 DIS3LQ8TF46 1054 aaKnown RBP16.67■□□□□ 0.26
SMPD3-204ENST00000563396 PAWRQ96IZ0 340 aaKnown RBP16.67■□□□□ 0.26
SMPD3-204ENST00000563396 NBPF3Q9H094 633 aa16.67■□□□□ 0.26
SMPD3-204ENST00000563396 SLC38A10Q9HBR0 1119 aa16.67■□□□□ 0.26
SMPD3-204ENST00000563396 FEM1BQ9UK73 627 aa16.67■□□□□ 0.26
SMPD3-204ENST00000563396 MSCO60682 206 aa16.66■□□□□ 0.26
SMPD3-204ENST00000563396 PLA2G6O60733 806 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms