RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 PLA2G6O60733 806 aa16.11■□□□□ 0.17
CLK3-209ENST00000562670 INPP5BP32019 993 aa16.11■□□□□ 0.17
CLK3-209ENST00000562670 SLC1A4P43007 532 aa16.11■□□□□ 0.17
CLK3-209ENST00000562670 RESTQ13127 1097 aa16.11■□□□□ 0.17
CLK3-209ENST00000562670 BTNL9Q6UXG8 535 aa16.11■□□□□ 0.17
CLK3-209ENST00000562670 CMTR1Q8N1G2 835 aaKnown RBP16.11■□□□□ 0.17
CLK3-209ENST00000562670 LPAR1Q92633 364 aa16.11■□□□□ 0.17
CLK3-209ENST00000562670 MTMR8Q96EF0 704 aa16.11■□□□□ 0.17
CLK3-209ENST00000562670 CDCA5Q96FF9 252 aa16.11■□□□□ 0.17
CLK3-209ENST00000562670 AS3MTQ9HBK9 375 aa16.11■□□□□ 0.17
CLK3-209ENST00000562670 DTNBO60941 627 aa16.1■□□□□ 0.17
CLK3-209ENST00000562670 BAG4O95429 457 aaKnown RBP16.1■□□□□ 0.17
CLK3-209ENST00000562670 CCDC96Q2M329 555 aa16.1■□□□□ 0.17
CLK3-209ENST00000562670 EAPPQ56P03 285 aaPredicted RBP16.1■□□□□ 0.17
CLK3-209ENST00000562670 KRT40Q6A162 431 aa16.1■□□□□ 0.17
CLK3-209ENST00000562670 RASGRP2Q7LDG7 609 aa16.1■□□□□ 0.17
CLK3-209ENST00000562670 BRAPQ7Z569 592 aa16.1■□□□□ 0.17
CLK3-209ENST00000562670 LDHDQ86WU2 507 aa16.1■□□□□ 0.17
CLK3-209ENST00000562670 ACER1Q8TDN7 264 aa16.1■□□□□ 0.17
CLK3-209ENST00000562670 AIFM3Q96NN9 605 aa16.1■□□□□ 0.17
CLK3-209ENST00000562670 PICK1Q9NRD5 415 aa16.1■□□□□ 0.17
CLK3-209ENST00000562670 V9GY48 417 aaPredicted RBP16.1■□□□□ 0.17
CLK3-209ENST00000562670 DDX11L8A8MPP1 907 aa16.09■□□□□ 0.17
CLK3-209ENST00000562670 PPFIA3O75145 1194 aa16.09■□□□□ 0.17
CLK3-209ENST00000562670 USP2O75604 605 aaPredicted RBP16.09■□□□□ 0.17
CLK3-209ENST00000562670 MMP1P03956 469 aa16.09■□□□□ 0.17
CLK3-209ENST00000562670 GOLGA8HP0CJ92 632 aa16.09■□□□□ 0.17
CLK3-209ENST00000562670 BMP3P12645 472 aa16.09■□□□□ 0.17
CLK3-209ENST00000562670 PTPRAP18433 802 aa16.09■□□□□ 0.17
CLK3-209ENST00000562670 PTMSP20962 102 aa16.09■□□□□ 0.17
CLK3-209ENST00000562670 ECE1P42892 770 aa16.09■□□□□ 0.17
CLK3-209ENST00000562670 IREB2P48200 963 aaKnown RBP16.09■□□□□ 0.17
CLK3-209ENST00000562670 USP14P54578 494 aa16.09■□□□□ 0.17
CLK3-209ENST00000562670 KIF23Q02241 960 aaPredicted RBP16.09■□□□□ 0.17
CLK3-209ENST00000562670 PRAMEF18Q5VWM3 479 aa16.09■□□□□ 0.17
CLK3-209ENST00000562670 ATL3Q6DD88 541 aa16.09■□□□□ 0.17
CLK3-209ENST00000562670 CCDC82Q8N4S0 544 aa16.09■□□□□ 0.17
CLK3-209ENST00000562670 RRP36Q96EU6 259 aaKnown RBP16.09■□□□□ 0.17
CLK3-209ENST00000562670 C12orf42Q96LP6 360 aa16.09■□□□□ 0.17
CLK3-209ENST00000562670 FRMPD2Q68DX3 1309 aaPredicted RBP16.09■□□□□ 0.17
CLK3-209ENST00000562670 MYH15Q9Y2K3 1946 aa16.09■□□□□ 0.17
CLK3-209ENST00000562670 WDR46O15213 610 aaKnown RBP16.08■□□□□ 0.16
CLK3-209ENST00000562670 U2AF2P26368 475 aaKnown RBP eCLIP16.08■□□□□ 0.163e-6■■□□□ 13
CLK3-209ENST00000562670 MAP3K9P80192 1104 aa16.08■□□□□ 0.16
CLK3-209ENST00000562670 SAFBQ15424 915 aaKnown RBP eCLIP16.08■□□□□ 0.16
CLK3-209ENST00000562670 GALNT17Q6IS24 598 aa16.08■□□□□ 0.16
CLK3-209ENST00000562670 PPP1R18Q6NYC8 613 aa16.08■□□□□ 0.16
CLK3-209ENST00000562670 CCDC148Q8NFR7 591 aa16.08■□□□□ 0.16
CLK3-209ENST00000562670 PHF20Q9BVI0 1012 aa16.08■□□□□ 0.16
CLK3-209ENST00000562670 FOXP1Q9H334 677 aaPredicted RBP16.08■□□□□ 0.16
CLK3-209ENST00000562670 BARHL2Q9NY43 387 aa16.08■□□□□ 0.16
CLK3-209ENST00000562670 SEC63Q9UGP8 760 aaKnown RBP16.08■□□□□ 0.16
CLK3-209ENST00000562670 ESYT2A0FGR8 921 aa16.07■□□□□ 0.16
CLK3-209ENST00000562670 USP17L10C9JJH3 530 aa16.07■□□□□ 0.16
CLK3-209ENST00000562670 UBE2Q2LH0YL09 131 aa16.07■□□□□ 0.16
CLK3-209ENST00000562670 GOLGA6L22H0YM25 854 aa16.07■□□□□ 0.16
CLK3-209ENST00000562670 CALML3P27482 149 aa16.07■□□□□ 0.16
CLK3-209ENST00000562670 MCM4P33991 863 aa16.07■□□□□ 0.16
CLK3-209ENST00000562670 NFKBIBQ15653 356 aa16.07■□□□□ 0.16
CLK3-209ENST00000562670 FAM160B2Q86V87 743 aa16.07■□□□□ 0.16
CLK3-209ENST00000562670 TEX2Q8IWB9 1127 aa16.07■□□□□ 0.16
CLK3-209ENST00000562670 TMEM87AQ8NBN3 555 aa16.07■□□□□ 0.16
CLK3-209ENST00000562670 DAGLBQ8NCG7 672 aa16.07■□□□□ 0.16
CLK3-209ENST00000562670 ZNF280CQ8ND82 737 aa16.07■□□□□ 0.16
CLK3-209ENST00000562670 CCDC12Q8WUD4 166 aaPredicted RBP16.07■□□□□ 0.16
CLK3-209ENST00000562670 FEZ1Q99689 392 aa16.07■□□□□ 0.16
CLK3-209ENST00000562670 GLIS2Q9BZE0 524 aaPredicted RBP16.07■□□□□ 0.16
CLK3-209ENST00000562670 MTMR7Q9Y216 660 aa16.07■□□□□ 0.16
CLK3-209ENST00000562670 SNCAIPQ9Y6H5 919 aa16.07■□□□□ 0.16
CLK3-209ENST00000562670 PNMA6FA0A0J9YX94 578 aa16.06■□□□□ 0.16
CLK3-209ENST00000562670 C19orf81C9J6K1 198 aa16.06■□□□□ 0.16
CLK3-209ENST00000562670 STAT2P52630 851 aa16.06■□□□□ 0.16
CLK3-209ENST00000562670 BACE1P56817 501 aa16.06■□□□□ 0.16
CLK3-209ENST00000562670 FKBP1BP68106 108 aa16.06■□□□□ 0.16
CLK3-209ENST00000562670 VGLL4Q14135 290 aa16.06■□□□□ 0.16
CLK3-209ENST00000562670 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.06■□□□□ 0.16
CLK3-209ENST00000562670 KCTD1Q719H9 257 aa16.06■□□□□ 0.16
CLK3-209ENST00000562670 ANKRD13AQ8IZ07 590 aa16.06■□□□□ 0.16
CLK3-209ENST00000562670 ADGRF4Q8IZF3 695 aa16.06■□□□□ 0.16
CLK3-209ENST00000562670 RBM46Q8TBY0 533 aaKnown RBP16.06■□□□□ 0.16
CLK3-209ENST00000562670 ZKSCAN4Q969J2 545 aaPredicted RBP16.06■□□□□ 0.16
CLK3-209ENST00000562670 SHISA4Q96DD7 197 aa16.06■□□□□ 0.16
CLK3-209ENST00000562670 JMJD4Q9H9V9 463 aa16.06■□□□□ 0.16
CLK3-209ENST00000562670 BRMS1Q9HCU9 246 aa16.06■□□□□ 0.16
CLK3-209ENST00000562670 GPCPD1Q9NPB8 672 aa16.06■□□□□ 0.16
CLK3-209ENST00000562670 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.06■□□□□ 0.16
CLK3-209ENST00000562670 CSADQ9Y600 493 aa16.06■□□□□ 0.16
CLK3-209ENST00000562670 STXBP3O00186 592 aa16.05■□□□□ 0.16
CLK3-209ENST00000562670 ZBTB5O15062 677 aa16.05■□□□□ 0.16
CLK3-209ENST00000562670 KRT85P78386 507 aa16.05■□□□□ 0.16
CLK3-209ENST00000562670 GUCY1B3Q02153 619 aa16.05■□□□□ 0.16
CLK3-209ENST00000562670 NPY5RQ15761 445 aa16.05■□□□□ 0.16
CLK3-209ENST00000562670 KIAA1755Q5JYT7 1200 aa16.05■□□□□ 0.16
CLK3-209ENST00000562670 SYDE2Q5VT97 1194 aa16.05■□□□□ 0.16
CLK3-209ENST00000562670 FOXD4L5Q5VV16 416 aaPredicted RBP16.05■□□□□ 0.16
CLK3-209ENST00000562670 WWC2Q6AWC2 1192 aa16.05■□□□□ 0.16
CLK3-209ENST00000562670 OTUD7BQ6GQQ9 843 aa16.05■□□□□ 0.16
CLK3-209ENST00000562670 TTBK2Q6IQ55 1244 aa16.05■□□□□ 0.16
CLK3-209ENST00000562670 FERMT3Q86UX7 667 aa16.05■□□□□ 0.16
CLK3-209ENST00000562670 DIS3L2Q8IYB7 885 aaKnown RBP16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms