RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 GNPTABQ3T906 1256 aa10.45□□□□□ -0.74
VPS39-205ENST00000562258 C12orf60Q5U649 245 aa10.45□□□□□ -0.74
VPS39-205ENST00000562258 SYDE2Q5VT97 1194 aa10.45□□□□□ -0.74
VPS39-205ENST00000562258 DYMQ7RTS9 669 aa10.45□□□□□ -0.74
VPS39-205ENST00000562258 AGBL3Q8NEM8 1001 aa10.45□□□□□ -0.74
VPS39-205ENST00000562258 CHD2O14647 1828 aaKnown RBP10.45□□□□□ -0.74
VPS39-205ENST00000562258 RGS12O14924 1447 aa10.45□□□□□ -0.74
VPS39-205ENST00000562258 FMN2Q9NZ56 1722 aa10.45□□□□□ -0.74
VPS39-205ENST00000562258 INPP5BP32019 993 aa10.45□□□□□ -0.74
VPS39-205ENST00000562258 UBE2HP62256 183 aa10.45□□□□□ -0.74
VPS39-205ENST00000562258 NR5A1Q13285 461 aa10.45□□□□□ -0.74
VPS39-205ENST00000562258 ASPRV1Q53RT3 343 aa10.45□□□□□ -0.74
VPS39-205ENST00000562258 ANO1Q5XXA6 986 aa10.45□□□□□ -0.74
VPS39-205ENST00000562258 HHIPL2Q6UWX4 724 aa10.45□□□□□ -0.74
VPS39-205ENST00000562258 ERCC4Q92889 916 aaPredicted RBP10.45□□□□□ -0.74
VPS39-205ENST00000562258 TRIM47Q96LD4 638 aa10.45□□□□□ -0.74
VPS39-205ENST00000562258 ANO10Q9NW15 660 aa10.45□□□□□ -0.74
VPS39-205ENST00000562258 TBC1D7Q9P0N9 293 aa10.45□□□□□ -0.74
VPS39-205ENST00000562258 NALCNQ8IZF0 1738 aa10.45□□□□□ -0.74
VPS39-205ENST00000562258 HOXA10P31260 410 aaPredicted RBP10.44□□□□□ -0.74
VPS39-205ENST00000562258 CDC37Q16543 378 aaPredicted RBP10.44□□□□□ -0.74
VPS39-205ENST00000562258 PLA2G4DQ86XP0 818 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 ENAHQ8N8S7 591 aaPredicted RBP10.44□□□□□ -0.74
VPS39-205ENST00000562258 RNF169Q8NCN4 708 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 LLPHQ9BRT6 129 aaKnown RBP10.44□□□□□ -0.74
VPS39-205ENST00000562258 ZNHIT6Q9NWK9 470 aaKnown RBP10.44□□□□□ -0.74
VPS39-205ENST00000562258 TECP42680 631 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 PKP1Q13835 747 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 SNRNP48Q6IEG0 339 aaKnown RBP10.44□□□□□ -0.74
VPS39-205ENST00000562258 FAM151AQ8WW52 585 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 GLT8D2Q9H1C3 349 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 ADARB2Q9NS39 739 aaKnown RBP10.44□□□□□ -0.74
VPS39-205ENST00000562258 PUF60Q9UHX1 559 aaKnown RBP10.44□□□□□ -0.74
VPS39-205ENST00000562258 SLURP2P0DP57 97 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 TTBK2Q6IQ55 1244 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 DDX19AQ9NUU7 478 aaKnown RBP10.44□□□□□ -0.74
VPS39-205ENST00000562258 SERPINA10Q9UK55 444 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 PCDHA12Q9UN75 941 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 TRPC6Q9Y210 931 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 SUGT1Q9Y2Z0 365 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 PCDHAC2Q9Y5I4 1007 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 KIF20BQ96Q89 1820 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 ARHGEF35A5YM69 484 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 USP17L15C9J2P7 530 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 USP17L13C9JLJ4 530 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 USP17L11C9JVI0 530 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 USP17L18D6R9N7 530 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 USP17L22D6RA61 530 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 USP17L17D6RBQ6 530 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 USP17L19D6RCP7 530 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 USP17L20D6RJB6 530 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 LARGE1O95461 756 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 CDC25AP30304 524 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 ZNF165P49910 485 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 USP17L24Q0WX57 530 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 CCDC183Q5T5S1 534 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 USP17L6PQ6QN14 398 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 DGKHQ86XP1 1220 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 IQUBQ8NA54 791 aa10.44□□□□□ -0.74
VPS39-205ENST00000562258 HERC5Q9UII4 1024 aaKnown RBP10.44□□□□□ -0.74
VPS39-205ENST00000562258 ADM5C9JUS6 153 aa10.43□□□□□ -0.74
VPS39-205ENST00000562258 SH2B2O14492 632 aaPredicted RBP10.43□□□□□ -0.74
VPS39-205ENST00000562258 POLR2DO15514 142 aaKnown RBP10.43□□□□□ -0.74
VPS39-205ENST00000562258 PFKFB2O60825 505 aa10.43□□□□□ -0.74
VPS39-205ENST00000562258 DDAH1O94760 285 aa10.43□□□□□ -0.74
VPS39-205ENST00000562258 KIF20AO95235 890 aa10.43□□□□□ -0.74
VPS39-205ENST00000562258 PNMA3Q9UL41 463 aa10.43□□□□□ -0.74
VPS39-205ENST00000562258 ZMYM6O95789 1325 aa10.43□□□□□ -0.74
VPS39-205ENST00000562258 WNT10BO00744 389 aa10.43□□□□□ -0.74
VPS39-205ENST00000562258 NEMFO60524 1076 aa10.43□□□□□ -0.74
VPS39-205ENST00000562258 RPS12P25398 132 aaKnown RBP10.43□□□□□ -0.74
VPS39-205ENST00000562258 MAP3K9P80192 1104 aa10.43□□□□□ -0.74
VPS39-205ENST00000562258 NCBP1Q09161 790 aaKnown RBP10.43□□□□□ -0.74
VPS39-205ENST00000562258 STXBP4Q6ZWJ1 553 aa10.43□□□□□ -0.74
VPS39-205ENST00000562258 DPH6Q7L8W6 267 aa10.43□□□□□ -0.74
VPS39-205ENST00000562258 CACNA2D4Q7Z3S7 1137 aa10.43□□□□□ -0.74
VPS39-205ENST00000562258 MCF2L2Q86YR7 1114 aa10.43□□□□□ -0.74
VPS39-205ENST00000562258 SLIT2O94813 1529 aa10.43□□□□□ -0.74
VPS39-205ENST00000562258 PHACTR2O75167 634 aa10.43□□□□□ -0.74
VPS39-205ENST00000562258 GRIK5Q16478 980 aa10.43□□□□□ -0.74
VPS39-205ENST00000562258 SLC51AQ86UW1 340 aa10.43□□□□□ -0.74
VPS39-205ENST00000562258 SPDYE2BA6NHP3 402 aa10.42□□□□□ -0.74
VPS39-205ENST00000562258 CSPG5O95196 566 aa10.42□□□□□ -0.74
VPS39-205ENST00000562258 SPDYE6P0CI01 402 aa10.42□□□□□ -0.74
VPS39-205ENST00000562258 SSR1P43307 286 aaKnown RBP10.42□□□□□ -0.74
VPS39-205ENST00000562258 HOXC10Q9NYD6 342 aa10.42□□□□□ -0.74
VPS39-205ENST00000562258 GPR75-ASB3A0A0A6YYF3 556 aa10.42□□□□□ -0.74
VPS39-205ENST00000562258 ARHGEF6Q15052 776 aa10.42□□□□□ -0.74
VPS39-205ENST00000562258 IL25Q9H293 177 aa10.42□□□□□ -0.74
VPS39-205ENST00000562258 RPAP3Q9H6T3 665 aaPredicted RBP10.42□□□□□ -0.74
VPS39-205ENST00000562258 TAF6LQ9Y6J9 622 aa10.42□□□□□ -0.74
VPS39-205ENST00000562258 POLR1AO95602 1720 aaPredicted RBP10.42□□□□□ -0.74
VPS39-205ENST00000562258 CCL15-CCL14A0A0B4J2E2 113 aa10.42□□□□□ -0.74
VPS39-205ENST00000562258 DDTLA6NHG4 134 aaPredicted RBP10.42□□□□□ -0.74
VPS39-205ENST00000562258 CCL15Q16663 113 aa10.42□□□□□ -0.74
VPS39-205ENST00000562258 MIER3Q7Z3K6 550 aa10.42□□□□□ -0.74
VPS39-205ENST00000562258 STAG2Q8N3U4 1231 aa10.42□□□□□ -0.74
VPS39-205ENST00000562258 RGS17Q9UGC6 210 aaPredicted RBP10.42□□□□□ -0.74
VPS39-205ENST00000562258 MKRN1Q9UHC7 482 aaKnown RBP10.42□□□□□ -0.74
VPS39-205ENST00000562258 PIK3C2AO00443 1686 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms