RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 MKL1Q969V6 931 aa7.3□□□□□ -1.24
VPS13C-210ENST00000561258 DPH2Q9BQC3 489 aaPredicted RBP7.3□□□□□ -1.24
VPS13C-210ENST00000561258 UBP1Q9NZI7 540 aa7.3□□□□□ -1.24
VPS13C-210ENST00000561258 PRRG2O14669 202 aa7.29□□□□□ -1.24
VPS13C-210ENST00000561258 KLF4O43474 513 aa7.29□□□□□ -1.24
VPS13C-210ENST00000561258 TFE3P19532 575 aaPredicted RBP7.29□□□□□ -1.24
VPS13C-210ENST00000561258 CYP7A1P22680 504 aa7.29□□□□□ -1.24
VPS13C-210ENST00000561258 KIR3DL1P43629 444 aa7.29□□□□□ -1.24
VPS13C-210ENST00000561258 CRKP46108 304 aa7.29□□□□□ -1.24
VPS13C-210ENST00000561258 SNAP47Q5SQN1 464 aa7.29□□□□□ -1.24
VPS13C-210ENST00000561258 TTBK2Q6IQ55 1244 aa7.29□□□□□ -1.24
VPS13C-210ENST00000561258 ANKS3Q6ZW76 656 aa7.29□□□□□ -1.24
VPS13C-210ENST00000561258 AMIGO3Q86WK7 504 aa7.29□□□□□ -1.24
VPS13C-210ENST00000561258 ANKRD13AQ8IZ07 590 aa7.29□□□□□ -1.24
VPS13C-210ENST00000561258 MYLIPQ8WY64 445 aa7.29□□□□□ -1.24
VPS13C-210ENST00000561258 MRFAP1L1Q96HT8 127 aa7.29□□□□□ -1.24
VPS13C-210ENST00000561258 ADAMTS10Q9H324 1103 aa7.29□□□□□ -1.24
VPS13C-210ENST00000561258 TMEM59LQ9UK28 342 aa7.29□□□□□ -1.24
VPS13C-210ENST00000561258 PCDHB5Q9Y5E4 795 aa7.29□□□□□ -1.24
VPS13C-210ENST00000561258 MRVI1Q9Y6F6 885 aa7.29□□□□□ -1.24
VPS13C-210ENST00000561258 SBNO2Q9Y2G9 1366 aa7.29□□□□□ -1.24
VPS13C-210ENST00000561258 NCANO14594 1321 aa7.28□□□□□ -1.24
VPS13C-210ENST00000561258 TCAF2A6NFQ2 919 aa7.28□□□□□ -1.24
VPS13C-210ENST00000561258 B8ZZF3 427 aa7.28□□□□□ -1.24
VPS13C-210ENST00000561258 MED14OSP0DP75 135 aa7.28□□□□□ -1.24
VPS13C-210ENST00000561258 TRHRP34981 398 aaPredicted RBP7.28□□□□□ -1.24
VPS13C-210ENST00000561258 RPS26P62854 115 aaKnown RBP7.28□□□□□ -1.24
VPS13C-210ENST00000561258 SEPT6Q14141 434 aa7.28□□□□□ -1.24
VPS13C-210ENST00000561258 TCEAL1Q15170 157 aa7.28□□□□□ -1.24
VPS13C-210ENST00000561258 CREG2Q8IUH2 290 aa7.28□□□□□ -1.24
VPS13C-210ENST00000561258 GOLM1Q8NBJ4 401 aa7.28□□□□□ -1.24
VPS13C-210ENST00000561258 SIRPGQ9P1W8 387 aa7.28□□□□□ -1.24
VPS13C-210ENST00000561258 SMG5Q9UPR3 1016 aaKnown RBP7.28□□□□□ -1.24
VPS13C-210ENST00000561258 MRPL42Q9Y6G3 142 aaKnown RBP7.28□□□□□ -1.24
VPS13C-210ENST00000561258 GFRA2O00451 464 aa7.27□□□□□ -1.25
VPS13C-210ENST00000561258 HPXP02790 462 aa7.27□□□□□ -1.25
VPS13C-210ENST00000561258 INHBBP09529 407 aa7.27□□□□□ -1.25
VPS13C-210ENST00000561258 APOBRQ0VD83 1088 aa7.27□□□□□ -1.25
VPS13C-210ENST00000561258 RAB33AQ14088 237 aa7.27□□□□□ -1.25
VPS13C-210ENST00000561258 LCE5AQ5TCM9 118 aa7.27□□□□□ -1.25
VPS13C-210ENST00000561258 FAM196AQ6ZSG2 479 aa7.27□□□□□ -1.25
VPS13C-210ENST00000561258 TMPRSS7Q7RTY8 843 aa7.27□□□□□ -1.25
VPS13C-210ENST00000561258 SLITRK4Q8IW52 837 aa7.27□□□□□ -1.25
VPS13C-210ENST00000561258 KCNN1Q92952 543 aa7.27□□□□□ -1.25
VPS13C-210ENST00000561258 Q96M66 194 aa7.27□□□□□ -1.25
VPS13C-210ENST00000561258 KRTAP4-5Q9BYR2 181 aa7.27□□□□□ -1.25
VPS13C-210ENST00000561258 TJP2Q9UDY2 1190 aa7.27□□□□□ -1.25
VPS13C-210ENST00000561258 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.27□□□□□ -1.25
VPS13C-210ENST00000561258 GLDCP23378 1020 aa7.26□□□□□ -1.25
VPS13C-210ENST00000561258 BUD31P41223 144 aaPredicted RBP7.26□□□□□ -1.25
VPS13C-210ENST00000561258 CIAPIN1Q6FI81 312 aa7.26□□□□□ -1.25
VPS13C-210ENST00000561258 HNRNPLLQ8WVV9 542 aaKnown RBP7.26□□□□□ -1.25
VPS13C-210ENST00000561258 NKD1Q969G9 470 aa7.26□□□□□ -1.25
VPS13C-210ENST00000561258 SHDQ96IW2 340 aa7.26□□□□□ -1.25
VPS13C-210ENST00000561258 COX4I2Q96KJ9 171 aa7.26□□□□□ -1.25
VPS13C-210ENST00000561258 LRRC3Q9BY71 257 aa7.26□□□□□ -1.25
VPS13C-210ENST00000561258 DUSP15Q9H1R2 295 aaPredicted RBP7.26□□□□□ -1.25
VPS13C-210ENST00000561258 PRKAG3Q9UGI9 489 aa7.26□□□□□ -1.25
VPS13C-210ENST00000561258 ROBO2Q9HCK4 1378 aa7.25□□□□□ -1.25
VPS13C-210ENST00000561258 PGRP06401 933 aa7.25□□□□□ -1.25
VPS13C-210ENST00000561258 TPP2P29144 1249 aaPredicted RBP7.25□□□□□ -1.25
VPS13C-210ENST00000561258 CCDC84Q86UT8 332 aaPredicted RBP7.25□□□□□ -1.25
VPS13C-210ENST00000561258 PIWIL2Q8TC59 973 aaKnown RBP7.25□□□□□ -1.25
VPS13C-210ENST00000561258 SRRTQ9BXP5 876 aaKnown RBP7.25□□□□□ -1.25
VPS13C-210ENST00000561258 RNF32Q9H0A6 362 aa7.25□□□□□ -1.25
VPS13C-210ENST00000561258 C19orf44Q9H6X5 657 aa7.25□□□□□ -1.25
VPS13C-210ENST00000561258 SP110Q9HB58 689 aa7.25□□□□□ -1.25
VPS13C-210ENST00000561258 F13A1P00488 732 aa7.24□□□□□ -1.25
VPS13C-210ENST00000561258 HSD3B2P26439 372 aa7.24□□□□□ -1.25
VPS13C-210ENST00000561258 LINC00310P59036 64 aa7.24□□□□□ -1.25
VPS13C-210ENST00000561258 RASA3Q14644 834 aa7.24□□□□□ -1.25
VPS13C-210ENST00000561258 MRPL41Q8IXM3 137 aaKnown RBP7.24□□□□□ -1.25
VPS13C-210ENST00000561258 CPLX3Q8WVH0 158 aa7.24□□□□□ -1.25
VPS13C-210ENST00000561258 ANAPC16Q96DE5 110 aa7.24□□□□□ -1.25
VPS13C-210ENST00000561258 TMEM87BQ96K49 555 aa7.24□□□□□ -1.25
VPS13C-210ENST00000561258 SLC26A8Q96RN1 970 aa7.24□□□□□ -1.25
VPS13C-210ENST00000561258 TRIM55Q9BYV6 548 aa7.24□□□□□ -1.25
VPS13C-210ENST00000561258 SNTG2Q9NY99 539 aa7.24□□□□□ -1.25
VPS13C-210ENST00000561258 RAPGEFL1Q9UHV5 662 aa7.24□□□□□ -1.25
VPS13C-210ENST00000561258 ENPP3O14638 875 aa7.23□□□□□ -1.25
VPS13C-210ENST00000561258 NUAK1O60285 661 aa7.23□□□□□ -1.25
VPS13C-210ENST00000561258 ETV3P41162 512 aa7.23□□□□□ -1.25
VPS13C-210ENST00000561258 GAB4Q2WGN9 574 aa7.23□□□□□ -1.25
VPS13C-210ENST00000561258 SEZ6Q53EL9 994 aa7.23□□□□□ -1.25
VPS13C-210ENST00000561258 SLC6A19Q695T7 634 aa7.23□□□□□ -1.25
VPS13C-210ENST00000561258 BNC2Q6ZN30 1099 aaPredicted RBP7.23□□□□□ -1.25
VPS13C-210ENST00000561258 CCDC81Q6ZN84 652 aa7.23□□□□□ -1.25
VPS13C-210ENST00000561258 DNAJB8Q8NHS0 232 aa7.23□□□□□ -1.25
VPS13C-210ENST00000561258 FBXO27Q8NI29 283 aa7.23□□□□□ -1.25
VPS13C-210ENST00000561258 SRPK1Q96SB4 655 aaKnown RBP7.23□□□□□ -1.25
VPS13C-210ENST00000561258 IRF2BPLQ9H1B7 796 aa7.23□□□□□ -1.25
VPS13C-210ENST00000561258 PPT2Q9UMR5 302 aa7.23□□□□□ -1.25
VPS13C-210ENST00000561258 CCDC180Q9P1Z9 1646 aa7.23□□□□□ -1.25
VPS13C-210ENST00000561258 FAM221AA4D161 298 aa7.22□□□□□ -1.25
VPS13C-210ENST00000561258 U2SURPO15042 1029 aaKnown RBP7.22□□□□□ -1.25
VPS13C-210ENST00000561258 SMAD7O15105 426 aaKnown RBP7.22□□□□□ -1.25
VPS13C-210ENST00000561258 LRP10Q7Z4F1 713 aa7.22□□□□□ -1.25
VPS13C-210ENST00000561258 FAM169BQ8N8A8 192 aa7.22□□□□□ -1.25
VPS13C-210ENST00000561258 GATAD2BQ8WXI9 593 aa7.22□□□□□ -1.25
VPS13C-210ENST00000561258 RNPC3Q96LT9 517 aaKnown RBP7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms