RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 PHF20Q9BVI0 1012 aa12.79□□□□□ -0.36
CUX1-218ENST00000560541 RNF225M0QZC1 329 aaPredicted RBP12.78□□□□□ -0.36
CUX1-218ENST00000560541 ADAMTS3O15072 1205 aa12.78□□□□□ -0.36
CUX1-218ENST00000560541 VEGFAP15692 232 aaPredicted RBP12.78□□□□□ -0.36
CUX1-218ENST00000560541 RABGGTAQ92696 567 aa12.78□□□□□ -0.36
CUX1-218ENST00000560541 TXLNAP40222 546 aa12.78□□□□□ -0.36
CUX1-218ENST00000560541 LONRF2Q1L5Z9 754 aa12.78□□□□□ -0.36
CUX1-218ENST00000560541 TTC38Q5R3I4 469 aa12.78□□□□□ -0.36
CUX1-218ENST00000560541 RRAGBQ5VZM2 374 aa12.78□□□□□ -0.36
CUX1-218ENST00000560541 MCTP2Q6DN12 878 aa12.78□□□□□ -0.36
CUX1-218ENST00000560541 CATIPQ7Z7H3 387 aa12.78□□□□□ -0.36
CUX1-218ENST00000560541 FUT8Q9BYC5 575 aa12.78□□□□□ -0.36
CUX1-218ENST00000560541 MED4Q9NPJ6 270 aa12.78□□□□□ -0.36
CUX1-218ENST00000560541 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.78□□□□□ -0.36
CUX1-218ENST00000560541 NUP98P52948 1817 aa12.78□□□□□ -0.36
CUX1-218ENST00000560541 N4BP3O15049 544 aa12.77□□□□□ -0.36
CUX1-218ENST00000560541 MCM7P33993 719 aa12.77□□□□□ -0.36
CUX1-218ENST00000560541 IL6STP40189 918 aaPredicted RBP12.77□□□□□ -0.36
CUX1-218ENST00000560541 MCM6Q14566 821 aa12.77□□□□□ -0.36
CUX1-218ENST00000560541 FILIP1LQ4L180 1135 aa12.77□□□□□ -0.36
CUX1-218ENST00000560541 CDKAL1Q5VV42 579 aa12.77□□□□□ -0.36
CUX1-218ENST00000560541 WWC2Q6AWC2 1192 aa12.77□□□□□ -0.36
CUX1-218ENST00000560541 PIK3AP1Q6ZUJ8 805 aa12.77□□□□□ -0.36
CUX1-218ENST00000560541 SUGCTQ9HAC7 445 aa12.77□□□□□ -0.36
CUX1-218ENST00000560541 TAB2Q9NYJ8 693 aa12.77□□□□□ -0.36
CUX1-218ENST00000560541 XDHP47989 1333 aa12.77□□□□□ -0.36
CUX1-218ENST00000560541 ERVV-1B6SEH8 477 aa12.77□□□□□ -0.37
CUX1-218ENST00000560541 ECM2O94769 699 aaPredicted RBP12.77□□□□□ -0.37
CUX1-218ENST00000560541 RHOXF2BP0C7M4 288 aa12.77□□□□□ -0.37
CUX1-218ENST00000560541 FUT2Q10981 343 aa12.77□□□□□ -0.37
CUX1-218ENST00000560541 KRT31Q15323 416 aa12.77□□□□□ -0.37
CUX1-218ENST00000560541 SLC35F6Q8N357 371 aa12.77□□□□□ -0.37
CUX1-218ENST00000560541 RHOXF2Q9BQY4 288 aa12.77□□□□□ -0.37
CUX1-218ENST00000560541 MYH6P13533 1939 aa12.77□□□□□ -0.37
CUX1-218ENST00000560541 MYH2Q9UKX2 1941 aa12.77□□□□□ -0.37
CUX1-218ENST00000560541 RTL9Q8NET4 1388 aa12.77□□□□□ -0.37
CUX1-218ENST00000560541 KIF1CO43896 1103 aaKnown RBP12.77□□□□□ -0.37
CUX1-218ENST00000560541 PBX1P40424 430 aa12.77□□□□□ -0.37
CUX1-218ENST00000560541 MAGEA9P43362 315 aa12.77□□□□□ -0.37
CUX1-218ENST00000560541 CCDC152Q4G0S7 254 aa12.77□□□□□ -0.37
CUX1-218ENST00000560541 FAM47AQ5JRC9 791 aa12.77□□□□□ -0.37
CUX1-218ENST00000560541 SH3RF1Q7Z6J0 888 aa12.77□□□□□ -0.37
CUX1-218ENST00000560541 PNKPQ96T60 521 aa12.77□□□□□ -0.37
CUX1-218ENST00000560541 NUP88Q99567 741 aaPredicted RBP12.77□□□□□ -0.37
CUX1-218ENST00000560541 NIP7Q9Y221 180 aaKnown RBP eCLIP12.77□□□□□ -0.37
CUX1-218ENST00000560541 BCL9O00512 1426 aa12.76□□□□□ -0.37
CUX1-218ENST00000560541 EIF3CLB5ME19 914 aaKnown RBP12.76□□□□□ -0.37
CUX1-218ENST00000560541 MPHOSPH10O00566 681 aaKnown RBP12.76□□□□□ -0.37
CUX1-218ENST00000560541 SRGAP1Q7Z6B7 1085 aa12.76□□□□□ -0.37
CUX1-218ENST00000560541 EIF3CQ99613 913 aaKnown RBP12.76□□□□□ -0.37
CUX1-218ENST00000560541 H3BQF6 201 aa12.76□□□□□ -0.37
CUX1-218ENST00000560541 PES1O00541 588 aaKnown RBP12.76□□□□□ -0.37
CUX1-218ENST00000560541 IBSPP21815 317 aaPredicted RBP12.76□□□□□ -0.37
CUX1-218ENST00000560541 MNAT1P51948 309 aa12.76□□□□□ -0.37
CUX1-218ENST00000560541 ERVK-24P63145 666 aa12.76□□□□□ -0.37
CUX1-218ENST00000560541 NPY5RQ15761 445 aa12.76□□□□□ -0.37
CUX1-218ENST00000560541 GSDMAQ96QA5 445 aa12.76□□□□□ -0.37
CUX1-218ENST00000560541 MTRQ99707 1265 aa12.76□□□□□ -0.37
CUX1-218ENST00000560541 SLF1Q9BQI6 1058 aa12.76□□□□□ -0.37
CUX1-218ENST00000560541 ANKZF1Q9H8Y5 726 aa12.76□□□□□ -0.37
CUX1-218ENST00000560541 TIAM2Q8IVF5 1701 aa12.76□□□□□ -0.37
CUX1-218ENST00000560541 TROAPQ12815 778 aa12.75□□□□□ -0.37
CUX1-218ENST00000560541 IQCA1Q86XH1 822 aa12.75□□□□□ -0.37
CUX1-218ENST00000560541 FERMT2Q96AC1 680 aa12.75□□□□□ -0.37
CUX1-218ENST00000560541 EEF2KMTQ96G04 330 aa12.75□□□□□ -0.37
CUX1-218ENST00000560541 ACSBG1Q96GR2 724 aa12.75□□□□□ -0.37
CUX1-218ENST00000560541 CDC23Q9UJX2 597 aa12.75□□□□□ -0.37
CUX1-218ENST00000560541 USP17L12C9JPN9 530 aa12.75□□□□□ -0.37
CUX1-218ENST00000560541 USP17L21D6R901 530 aa12.75□□□□□ -0.37
CUX1-218ENST00000560541 PRPF3O43395 683 aaKnown RBP12.75□□□□□ -0.37
CUX1-218ENST00000560541 NLRP5P59047 1200 aa12.75□□□□□ -0.37
CUX1-218ENST00000560541 RASGRP2Q7LDG7 609 aa12.75□□□□□ -0.37
CUX1-218ENST00000560541 CNGA4Q8IV77 575 aa12.75□□□□□ -0.37
CUX1-218ENST00000560541 SRBD1Q8N5C6 995 aaKnown RBP12.75□□□□□ -0.37
CUX1-218ENST00000560541 CTAGE1Q96RT6 745 aa12.75□□□□□ -0.37
CUX1-218ENST00000560541 RIOK1Q9BRS2 568 aaKnown RBP12.75□□□□□ -0.37
CUX1-218ENST00000560541 UBXN6Q9BZV1 441 aa12.75□□□□□ -0.37
CUX1-218ENST00000560541 TRIM10Q9UDY6 481 aa12.75□□□□□ -0.37
CUX1-218ENST00000560541 TFR2Q9UP52 801 aa12.75□□□□□ -0.37
CUX1-218ENST00000560541 JAG2Q9Y219 1238 aa12.75□□□□□ -0.37
CUX1-218ENST00000560541 GDAQ9Y2T3 454 aa12.75□□□□□ -0.37
CUX1-218ENST00000560541 BAZ2AQ9UIF9 1905 aaKnown RBP12.75□□□□□ -0.37
CUX1-218ENST00000560541 ITGB4P16144 1822 aa12.75□□□□□ -0.37
CUX1-218ENST00000560541 CTAGE9A4FU28 777 aa12.75□□□□□ -0.37
CUX1-218ENST00000560541 GSCP56915 257 aaPredicted RBP12.75□□□□□ -0.37
CUX1-218ENST00000560541 IL17AQ16552 155 aa12.75□□□□□ -0.37
CUX1-218ENST00000560541 PLIN2Q99541 437 aa12.75□□□□□ -0.37
CUX1-218ENST00000560541 PLEKHA4Q9H4M7 779 aa12.75□□□□□ -0.37
CUX1-218ENST00000560541 MTMR7Q9Y216 660 aa12.75□□□□□ -0.37
CUX1-218ENST00000560541 MYH8P13535 1937 aa12.75□□□□□ -0.37
CUX1-218ENST00000560541 TRIM49BA6NDI0 452 aa12.74□□□□□ -0.37
CUX1-218ENST00000560541 GOLGA5Q8TBA6 731 aa12.74□□□□□ -0.37
CUX1-218ENST00000560541 RASGRP4Q8TDF6 673 aa12.74□□□□□ -0.37
CUX1-218ENST00000560541 NAA15Q9BXJ9 866 aaKnown RBP12.74□□□□□ -0.37
CUX1-218ENST00000560541 PDE11AQ9HCR9 933 aa12.74□□□□□ -0.37
CUX1-218ENST00000560541 ABHD10Q9NUJ1 306 aa12.74□□□□□ -0.37
CUX1-218ENST00000560541 DOCK2Q92608 1830 aa12.74□□□□□ -0.37
CUX1-218ENST00000560541 ANKRD36CQ5JPF3 1778 aa12.74□□□□□ -0.37
CUX1-218ENST00000560541 CCDC151A5D8V7 595 aa12.74□□□□□ -0.37
CUX1-218ENST00000560541 ATP8B1O43520 1251 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 110.5 ms