RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 LOC285556D6RIA3 1793 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 THSD7BQ9C0I4 1608 aa10.78□□□□□ -0.68
LDLR-210ENST00000559340 CCDC196A0A1B0GTZ2 297 aa10.78□□□□□ -0.68
LDLR-210ENST00000559340 A0A1W2PRG0 241 aa10.78□□□□□ -0.68
LDLR-210ENST00000559340 PARP1P09874 1014 aaKnown RBP10.78□□□□□ -0.68
LDLR-210ENST00000559340 FDX1P10109 184 aa10.78□□□□□ -0.68
LDLR-210ENST00000559340 BMP3P12645 472 aa10.78□□□□□ -0.68
LDLR-210ENST00000559340 GJA5P36382 358 aa10.78□□□□□ -0.68
LDLR-210ENST00000559340 SLC1A4P43007 532 aa10.78□□□□□ -0.68
LDLR-210ENST00000559340 TM4SF4P48230 202 aa10.78□□□□□ -0.68
LDLR-210ENST00000559340 KIF23Q02241 960 aaPredicted RBP10.78□□□□□ -0.68
LDLR-210ENST00000559340 ZYXQ15942 572 aaKnown RBP10.78□□□□□ -0.68
LDLR-210ENST00000559340 ASPRV1Q53RT3 343 aa10.78□□□□□ -0.68
LDLR-210ENST00000559340 GPATCH4Q5T3I0 446 aaKnown RBP10.78□□□□□ -0.68
LDLR-210ENST00000559340 ANKRD23Q86SG2 305 aa10.78□□□□□ -0.68
LDLR-210ENST00000559340 CLEC10AQ8IUN9 316 aa10.78□□□□□ -0.68
LDLR-210ENST00000559340 LRRC47Q8N1G4 583 aaKnown RBP10.78□□□□□ -0.68
LDLR-210ENST00000559340 CTCFLQ8NI51 663 aaPredicted RBP10.78□□□□□ -0.68
LDLR-210ENST00000559340 GTF3C2Q8WUA4 911 aaPredicted RBP10.78□□□□□ -0.68
LDLR-210ENST00000559340 MS4A4AQ96JQ5 239 aa10.78□□□□□ -0.68
LDLR-210ENST00000559340 LZTS2Q9BRK4 669 aa10.78□□□□□ -0.68
LDLR-210ENST00000559340 LRRC2Q9BYS8 371 aa10.78□□□□□ -0.68
LDLR-210ENST00000559340 AGXT2Q9BYV1 514 aa10.78□□□□□ -0.68
LDLR-210ENST00000559340 EMILIN3Q9NT22 766 aa10.78□□□□□ -0.68
LDLR-210ENST00000559340 HOXC10Q9NYD6 342 aa10.78□□□□□ -0.68
LDLR-210ENST00000559340 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.78□□□□□ -0.68
LDLR-210ENST00000559340 FEM1BQ9UK73 627 aa10.78□□□□□ -0.68
LDLR-210ENST00000559340 ISY1Q9ULR0 285 aaKnown RBP10.78□□□□□ -0.68
LDLR-210ENST00000559340 NAP1L2Q9ULW6 460 aaPredicted RBP10.78□□□□□ -0.68
LDLR-210ENST00000559340 AGTPBP1Q9UPW5 1226 aa10.78□□□□□ -0.68
LDLR-210ENST00000559340 ZBTB43O43298 467 aa10.77□□□□□ -0.69
LDLR-210ENST00000559340 PLA2G6O60733 806 aa10.77□□□□□ -0.69
LDLR-210ENST00000559340 NDUFB10O96000 172 aa10.77□□□□□ -0.69
LDLR-210ENST00000559340 CPA1P15085 419 aa10.77□□□□□ -0.69
LDLR-210ENST00000559340 HOXA7P31268 230 aaPredicted RBP10.77□□□□□ -0.69
LDLR-210ENST00000559340 IRX3P78415 501 aaPredicted RBP10.77□□□□□ -0.69
LDLR-210ENST00000559340 CCDC96Q2M329 555 aa10.77□□□□□ -0.69
LDLR-210ENST00000559340 CPLX2Q6PUV4 134 aaKnown RBP10.77□□□□□ -0.69
LDLR-210ENST00000559340 FAM160B2Q86V87 743 aa10.77□□□□□ -0.69
LDLR-210ENST00000559340 ZNF654Q8IZM8 581 aa10.77□□□□□ -0.69
LDLR-210ENST00000559340 NUP133Q8WUM0 1156 aa10.77□□□□□ -0.69
LDLR-210ENST00000559340 BRF1Q92994 677 aa10.77□□□□□ -0.69
LDLR-210ENST00000559340 ZNF274Q96GC6 653 aaPredicted RBP10.77□□□□□ -0.69
LDLR-210ENST00000559340 ZSCAN31Q96LW9 406 aaPredicted RBP10.77□□□□□ -0.69
LDLR-210ENST00000559340 TCEANC2Q96MN5 208 aa10.77□□□□□ -0.69
LDLR-210ENST00000559340 RBM28Q9NW13 759 aaKnown RBP10.77□□□□□ -0.69
LDLR-210ENST00000559340 MTMR7Q9Y216 660 aa10.77□□□□□ -0.69
LDLR-210ENST00000559340 CTDP1Q9Y5B0 961 aaPredicted RBP10.77□□□□□ -0.69
LDLR-210ENST00000559340 KLF18A0A0U1RQI7 1052 aa10.76□□□□□ -0.69
LDLR-210ENST00000559340 DHX16O60231 1041 aaKnown RBP10.76□□□□□ -0.69
LDLR-210ENST00000559340 PDHBP11177 359 aa10.76□□□□□ -0.69
LDLR-210ENST00000559340 VCAM1P19320 739 aa10.76□□□□□ -0.69
LDLR-210ENST00000559340 SMARCA1P28370 1054 aa10.76□□□□□ -0.69
LDLR-210ENST00000559340 EVCP57679 992 aa10.76□□□□□ -0.69
LDLR-210ENST00000559340 IKQ13123 557 aaPredicted RBP10.76□□□□□ -0.69
LDLR-210ENST00000559340 COG2Q14746 738 aa10.76□□□□□ -0.69
LDLR-210ENST00000559340 GRM4Q14833 912 aa10.76□□□□□ -0.69
LDLR-210ENST00000559340 CATSPERGQ6ZRH7 1159 aa10.76□□□□□ -0.69
LDLR-210ENST00000559340 NKX2-3Q8TAU0 364 aa10.76□□□□□ -0.69
LDLR-210ENST00000559340 BRI3BPQ8WY22 251 aa10.76□□□□□ -0.69
LDLR-210ENST00000559340 PARK7Q99497 189 aaKnown RBP10.76□□□□□ -0.69
LDLR-210ENST00000559340 KIF2CQ99661 725 aa10.76□□□□□ -0.69
LDLR-210ENST00000559340 TANGO6Q9C0B7 1094 aa10.76□□□□□ -0.69
LDLR-210ENST00000559340 RPAP3Q9H6T3 665 aaPredicted RBP10.76□□□□□ -0.69
LDLR-210ENST00000559340 PNMA2Q9UL42 364 aa10.76□□□□□ -0.69
LDLR-210ENST00000559340 LIMCH1Q9UPQ0 1083 aa10.76□□□□□ -0.69
LDLR-210ENST00000559340 PARP14Q460N5 1801 aa10.76□□□□□ -0.69
LDLR-210ENST00000559340 MYPNQ86TC9 1320 aa10.76□□□□□ -0.69
LDLR-210ENST00000559340 BTBD19C9JJ37 291 aa10.75□□□□□ -0.69
LDLR-210ENST00000559340 PDHXO00330 501 aa10.75□□□□□ -0.69
LDLR-210ENST00000559340 SNHG28P0DPA3 235 aa10.75□□□□□ -0.69
LDLR-210ENST00000559340 GCLCP48506 637 aaPredicted RBP10.75□□□□□ -0.69
LDLR-210ENST00000559340 STAT2P52630 851 aa10.75□□□□□ -0.69
LDLR-210ENST00000559340 AK2P54819 239 aa10.75□□□□□ -0.69
LDLR-210ENST00000559340 ZNF543Q08ER8 600 aa10.75□□□□□ -0.69
LDLR-210ENST00000559340 APOBRQ0VD83 1088 aa10.75□□□□□ -0.69
LDLR-210ENST00000559340 TROAPQ12815 778 aa10.75□□□□□ -0.69
LDLR-210ENST00000559340 TRAF1Q13077 416 aa10.75□□□□□ -0.69
LDLR-210ENST00000559340 RTN1Q16799 776 aa10.75□□□□□ -0.69
LDLR-210ENST00000559340 FAM83BQ5T0W9 1011 aa10.75□□□□□ -0.69
LDLR-210ENST00000559340 APOA5Q6Q788 366 aa10.75□□□□□ -0.69
LDLR-210ENST00000559340 IFNL1Q8IU54 200 aa10.75□□□□□ -0.69
LDLR-210ENST00000559340 SPICE1Q8N0Z3 855 aa10.75□□□□□ -0.69
LDLR-210ENST00000559340 PRPF38AQ8NAV1 312 aaKnown RBP10.75□□□□□ -0.69
LDLR-210ENST00000559340 FANCBQ8NB91 859 aa10.75□□□□□ -0.69
LDLR-210ENST00000559340 SLKQ9H2G2 1235 aaPredicted RBP10.75□□□□□ -0.69
LDLR-210ENST00000559340 ZFYVE28Q9HCC9 887 aa10.75□□□□□ -0.69
LDLR-210ENST00000559340 SH2B1Q9NRF2 756 aaPredicted RBP10.75□□□□□ -0.69
LDLR-210ENST00000559340 PALM3A6NDB9 673 aaPredicted RBP10.74□□□□□ -0.69
LDLR-210ENST00000559340 GOLGA8AA7E2F4 631 aa10.74□□□□□ -0.69
LDLR-210ENST00000559340 GOLGA8BA8MQT2 603 aa10.74□□□□□ -0.69
LDLR-210ENST00000559340 TMEM232C9JQI7 657 aa10.74□□□□□ -0.69
LDLR-210ENST00000559340 AOC2O75106 756 aa10.74□□□□□ -0.69
LDLR-210ENST00000559340 ZBED4O75132 1171 aa10.74□□□□□ -0.69
LDLR-210ENST00000559340 FLOT1O75955 427 aa10.74□□□□□ -0.69
LDLR-210ENST00000559340 DSG3P32926 999 aa10.74□□□□□ -0.69
LDLR-210ENST00000559340 METAP2P50579 478 aaKnown RBP eCLIP10.74□□□□□ -0.695e-7■□□□□ 8.9
LDLR-210ENST00000559340 MOGSQ13724 837 aa10.74□□□□□ -0.69
LDLR-210ENST00000559340 TOB2Q14106 344 aaPredicted RBP10.74□□□□□ -0.69
LDLR-210ENST00000559340 TAF1CQ15572 869 aaPredicted RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms