RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 SHDQ96IW2 340 aa6.08□□□□□ -1.44
VPS13C-207ENST00000558919 ZNF512BQ96KM6 892 aaPredicted RBP6.08□□□□□ -1.44
VPS13C-207ENST00000558919 HDAC8Q9BY41 377 aa6.08□□□□□ -1.44
VPS13C-207ENST00000558919 MKRN2Q9H000 416 aaKnown RBP6.08□□□□□ -1.44
VPS13C-207ENST00000558919 PRR13Q9NZ81 148 aa6.08□□□□□ -1.44
VPS13C-207ENST00000558919 CTNND2Q9UQB3 1225 aa6.08□□□□□ -1.44
VPS13C-207ENST00000558919 PAX4O43316 350 aa6.07□□□□□ -1.44
VPS13C-207ENST00000558919 SIGLEC6O43699 453 aa6.07□□□□□ -1.44
VPS13C-207ENST00000558919 PAPLNO95428 1278 aa6.07□□□□□ -1.44
VPS13C-207ENST00000558919 LTKP29376 864 aa6.07□□□□□ -1.44
VPS13C-207ENST00000558919 EGR3Q06889 387 aa6.07□□□□□ -1.44
VPS13C-207ENST00000558919 GNL2Q13823 731 aaKnown RBP6.07□□□□□ -1.44
VPS13C-207ENST00000558919 ZYXQ15942 572 aaKnown RBP6.07□□□□□ -1.44
VPS13C-207ENST00000558919 TMC3Q7Z5M5 1100 aa6.07□□□□□ -1.44
VPS13C-207ENST00000558919 ZNF655Q8N720 491 aaPredicted RBP6.07□□□□□ -1.44
VPS13C-207ENST00000558919 CPLX3Q8WVH0 158 aa6.07□□□□□ -1.44
VPS13C-207ENST00000558919 PRDM14Q9GZV8 571 aa6.07□□□□□ -1.44
VPS13C-207ENST00000558919 CAPN10Q9HC96 672 aa6.07□□□□□ -1.44
VPS13C-207ENST00000558919 TMEM59LQ9UK28 342 aa6.07□□□□□ -1.44
VPS13C-207ENST00000558919 PCDHB12Q9Y5F1 795 aa6.07□□□□□ -1.44
VPS13C-207ENST00000558919 FAM86C2PA6NEL3 165 aa6.06□□□□□ -1.44
VPS13C-207ENST00000558919 AFMP43652 599 aa6.06□□□□□ -1.44
VPS13C-207ENST00000558919 SNW1Q13573 536 aaKnown RBP6.06□□□□□ -1.44
VPS13C-207ENST00000558919 AUHQ13825 339 aaKnown RBP6.06□□□□□ -1.44
VPS13C-207ENST00000558919 BBS9Q3SYG4 887 aa6.06□□□□□ -1.44
VPS13C-207ENST00000558919 ANKRD39Q53RE8 183 aa6.06□□□□□ -1.44
VPS13C-207ENST00000558919 CCDC144CPQ8IYA2 1237 aa6.06□□□□□ -1.44
VPS13C-207ENST00000558919 C7orf61Q8IZ16 206 aa6.06□□□□□ -1.44
VPS13C-207ENST00000558919 C19orf73Q9NVV2 129 aa6.06□□□□□ -1.44
VPS13C-207ENST00000558919 SLAMF8Q9P0V8 285 aa6.06□□□□□ -1.44
VPS13C-207ENST00000558919 PCDHA11Q9Y5I1 949 aa6.06□□□□□ -1.44
VPS13C-207ENST00000558919 C9IYK1 514 aa6.05□□□□□ -1.44
VPS13C-207ENST00000558919 PRAMEF1O95521 474 aa6.05□□□□□ -1.44
VPS13C-207ENST00000558919 CASP7P55210 303 aa6.05□□□□□ -1.44
VPS13C-207ENST00000558919 RALGPS1Q5JS13 557 aa6.05□□□□□ -1.44
VPS13C-207ENST00000558919 RNF111Q6ZNA4 994 aa6.05□□□□□ -1.44
VPS13C-207ENST00000558919 TTC6Q86TZ1 520 aa6.05□□□□□ -1.44
VPS13C-207ENST00000558919 USHBP1Q8N6Y0 703 aa6.05□□□□□ -1.44
VPS13C-207ENST00000558919 SYTL4Q96C24 671 aaPredicted RBP6.05□□□□□ -1.44
VPS13C-207ENST00000558919 TCTN2Q96GX1 697 aa6.05□□□□□ -1.44
VPS13C-207ENST00000558919 PHAXQ9H814 394 aaKnown RBP6.05□□□□□ -1.44
VPS13C-207ENST00000558919 CHST7Q9NS84 486 aa6.05□□□□□ -1.44
VPS13C-207ENST00000558919 FBXL21Q9UKT6 434 aa6.05□□□□□ -1.44
VPS13C-207ENST00000558919 ZNF214Q9UL59 606 aaPredicted RBP6.05□□□□□ -1.44
VPS13C-207ENST00000558919 LTBP3Q9NS15 1303 aa6.04□□□□□ -1.44
VPS13C-207ENST00000558919 DNAJC25-GNG10A0A024R161 153 aa6.04□□□□□ -1.44
VPS13C-207ENST00000558919 A0A1W2PQH9 124 aa6.04□□□□□ -1.44
VPS13C-207ENST00000558919 TEKQ02763 1124 aa6.04□□□□□ -1.44
VPS13C-207ENST00000558919 PPFIBP1Q86W92 1011 aa6.04□□□□□ -1.44
VPS13C-207ENST00000558919 DHX38Q92620 1227 aaKnown RBP6.04□□□□□ -1.44
VPS13C-207ENST00000558919 FMNL2Q96PY5 1086 aa6.04□□□□□ -1.44
VPS13C-207ENST00000558919 TINF2Q9BSI4 451 aa6.04□□□□□ -1.44
VPS13C-207ENST00000558919 ADAMTS10Q9H324 1103 aa6.04□□□□□ -1.44
VPS13C-207ENST00000558919 ZNF281Q9Y2X9 895 aa6.04□□□□□ -1.44
VPS13C-207ENST00000558919 SHOXO15266 292 aa6.03□□□□□ -1.44
VPS13C-207ENST00000558919 ZGLP1P0C6A0 271 aa6.03□□□□□ -1.44
VPS13C-207ENST00000558919 PCBP3P57721 371 aaKnown RBP6.03□□□□□ -1.44
VPS13C-207ENST00000558919 AXDND1Q5T1B0 1012 aaPredicted RBP6.03□□□□□ -1.44
VPS13C-207ENST00000558919 TDRD10Q5VZ19 366 aaKnown RBP6.03□□□□□ -1.44
VPS13C-207ENST00000558919 SLC43A3Q8NBI5 491 aa6.03□□□□□ -1.44
VPS13C-207ENST00000558919 LINC00116Q8NCU8 138 aa6.03□□□□□ -1.44
VPS13C-207ENST00000558919 FAM168AQ92567 244 aa6.03□□□□□ -1.44
VPS13C-207ENST00000558919 GFOD1Q9NXC2 390 aa6.03□□□□□ -1.44
VPS13C-207ENST00000558919 RNF114Q9Y508 228 aa6.03□□□□□ -1.44
VPS13C-207ENST00000558919 CARMIL2Q6F5E8 1435 aa6.02□□□□□ -1.45
VPS13C-207ENST00000558919 SSU72P8A0A1W2PR75 194 aa6.02□□□□□ -1.45
VPS13C-207ENST00000558919 HPXP02790 462 aa6.02□□□□□ -1.45
VPS13C-207ENST00000558919 SSBP05455 408 aaKnown RBP eCLIP6.02□□□□□ -1.45
VPS13C-207ENST00000558919 RAC2P15153 192 aa6.02□□□□□ -1.45
VPS13C-207ENST00000558919 DUSP4Q13115 394 aa6.02□□□□□ -1.45
VPS13C-207ENST00000558919 DCAF15Q66K64 600 aa6.02□□□□□ -1.45
VPS13C-207ENST00000558919 ZSWIM9Q86XI8 627 aa6.02□□□□□ -1.45
VPS13C-207ENST00000558919 PDZD8Q8NEN9 1154 aa6.02□□□□□ -1.45
VPS13C-207ENST00000558919 KIRREL1Q96J84 757 aa6.02□□□□□ -1.45
VPS13C-207ENST00000558919 FOXP3Q9BZS1 431 aa6.02□□□□□ -1.45
VPS13C-207ENST00000558919 TCFL5Q9UL49 500 aa6.02□□□□□ -1.45
VPS13C-207ENST00000558919 TP53P04637 393 aaPredicted RBP6.01□□□□□ -1.45
VPS13C-207ENST00000558919 GSNP06396 782 aa6.01□□□□□ -1.45
VPS13C-207ENST00000558919 SYPP08247 313 aa6.01□□□□□ -1.45
VPS13C-207ENST00000558919 CD247P20963 164 aa6.01□□□□□ -1.45
VPS13C-207ENST00000558919 ENDOUP21128 410 aaKnown RBP6.01□□□□□ -1.45
VPS13C-207ENST00000558919 BMP8BP34820 402 aa6.01□□□□□ -1.45
VPS13C-207ENST00000558919 HK2P52789 917 aa6.01□□□□□ -1.45
VPS13C-207ENST00000558919 SLC7A5Q01650 507 aa6.01□□□□□ -1.45
VPS13C-207ENST00000558919 ARID5AQ03989 594 aa6.01□□□□□ -1.45
VPS13C-207ENST00000558919 NR0B2Q15466 257 aa6.01□□□□□ -1.45
VPS13C-207ENST00000558919 PPP2R5EQ16537 467 aa6.01□□□□□ -1.45
VPS13C-207ENST00000558919 KCNMB1Q16558 191 aa6.01□□□□□ -1.45
VPS13C-207ENST00000558919 GNPTABQ3T906 1256 aa6.01□□□□□ -1.45
VPS13C-207ENST00000558919 SPPL2CQ8IUH8 684 aa6.01□□□□□ -1.45
VPS13C-207ENST00000558919 OXR1Q8N573 874 aa6.01□□□□□ -1.45
VPS13C-207ENST00000558919 FAM169BQ8N8A8 192 aa6.01□□□□□ -1.45
VPS13C-207ENST00000558919 LINC01599Q8WXQ3 324 aa6.01□□□□□ -1.45
VPS13C-207ENST00000558919 ANAPC16Q96DE5 110 aa6.01□□□□□ -1.45
VPS13C-207ENST00000558919 DSCC1Q9BVC3 393 aa6.01□□□□□ -1.45
VPS13C-207ENST00000558919 KRTAP4-9Q9BYQ8 210 aa6.01□□□□□ -1.45
VPS13C-207ENST00000558919 GP6Q9HCN6 339 aa6.01□□□□□ -1.45
VPS13C-207ENST00000558919 A0A087WZG4 1122 aa6□□□□□ -1.45
VPS13C-207ENST00000558919 FITM1A5D6W6 292 aa6□□□□□ -1.45
VPS13C-207ENST00000558919 GLI1P08151 1106 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms