RNA–Protein interactions for RNA: ENST00000558080.1

SPG11-205, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 1 (best)

Gene SPG11, Length 759 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-205ENST00000558080 C20orf194Q5TEA3 1177 aa9.19□□□□□ -0.94
SPG11-205ENST00000558080 GPAT2Q6NUI2 795 aa9.19□□□□□ -0.94
SPG11-205ENST00000558080 TRIM46Q7Z4K8 759 aa9.19□□□□□ -0.94
SPG11-205ENST00000558080 SIRT2Q8IXJ6 389 aa9.19□□□□□ -0.94
SPG11-205ENST00000558080 RPAP2Q8IXW5 612 aaPredicted RBP9.19□□□□□ -0.94
SPG11-205ENST00000558080 KRI1Q8N9T8 703 aaKnown RBP9.19□□□□□ -0.94
SPG11-205ENST00000558080 ARHGAP39Q9C0H5 1083 aa9.19□□□□□ -0.94
SPG11-205ENST00000558080 ANTXR1Q9H6X2 564 aa9.19□□□□□ -0.94
SPG11-205ENST00000558080 NXF1Q9UBU9 619 aaKnown RBP9.19□□□□□ -0.94
SPG11-205ENST00000558080 AFG3L2Q9Y4W6 797 aa9.19□□□□□ -0.94
SPG11-205ENST00000558080 WASF2Q9Y6W5 498 aa9.19□□□□□ -0.94
SPG11-205ENST00000558080 TRIM75PA6NK02 468 aa9.18□□□□□ -0.94
SPG11-205ENST00000558080 CAPN5O15484 640 aaPredicted RBP9.18□□□□□ -0.94
SPG11-205ENST00000558080 COL2A1P02458 1487 aaPredicted RBP9.18□□□□□ -0.94
SPG11-205ENST00000558080 BMP1P13497 986 aa9.18□□□□□ -0.94
SPG11-205ENST00000558080 LACTBP83111 547 aaPredicted RBP9.18□□□□□ -0.94
SPG11-205ENST00000558080 RRP1BQ14684 758 aaKnown RBP9.18□□□□□ -0.94
SPG11-205ENST00000558080 KIF22Q14807 665 aa9.18□□□□□ -0.94
SPG11-205ENST00000558080 C17orf99Q6UX52 265 aa9.18□□□□□ -0.94
SPG11-205ENST00000558080 NPAS3Q8IXF0 933 aa9.18□□□□□ -0.94
SPG11-205ENST00000558080 MAGEB6Q8N7X4 407 aa9.18□□□□□ -0.94
SPG11-205ENST00000558080 SAP30BPQ9UHR5 308 aaKnown RBP9.18□□□□□ -0.94
SPG11-205ENST00000558080 FLT1P17948 1338 aa9.17□□□□□ -0.94
SPG11-205ENST00000558080 A0A0G2JLL6 359 aaPredicted RBP9.17□□□□□ -0.94
SPG11-205ENST00000558080 IFIT2P09913 472 aaKnown RBP9.17□□□□□ -0.94
SPG11-205ENST00000558080 CYP2C8P10632 490 aa9.17□□□□□ -0.94
SPG11-205ENST00000558080 CAP2P40123 477 aa9.17□□□□□ -0.94
SPG11-205ENST00000558080 SLC4A8Q2Y0W8 1093 aa9.17□□□□□ -0.94
SPG11-205ENST00000558080 FASTKD5Q7L8L6 764 aaKnown RBP9.17□□□□□ -0.94
SPG11-205ENST00000558080 PRRT2Q7Z6L0 340 aaPredicted RBP9.17□□□□□ -0.94
SPG11-205ENST00000558080 CLASRPQ8N2M8 674 aaKnown RBP9.17□□□□□ -0.94
SPG11-205ENST00000558080 MIGA1Q8NAN2 632 aa9.17□□□□□ -0.94
SPG11-205ENST00000558080 SPIRE2Q8WWL2 714 aa9.17□□□□□ -0.94
SPG11-205ENST00000558080 KIF1BPQ96EK5 621 aa9.17□□□□□ -0.94
SPG11-205ENST00000558080 DHX36Q9H2U1 1008 aaKnown RBP9.17□□□□□ -0.94
SPG11-205ENST00000558080 CHMP4BQ9H444 224 aaKnown RBP9.17□□□□□ -0.94
SPG11-205ENST00000558080 EVA1BQ9NVM1 165 aa9.17□□□□□ -0.94
SPG11-205ENST00000558080 PI4KBQ9UBF8 816 aa9.17□□□□□ -0.94
SPG11-205ENST00000558080 PALD1Q9ULE6 856 aa9.17□□□□□ -0.94
SPG11-205ENST00000558080 PTCH2Q9Y6C5 1203 aa9.17□□□□□ -0.94
SPG11-205ENST00000558080 ADGRA2Q96PE1 1338 aa9.16□□□□□ -0.94
SPG11-205ENST00000558080 ZNFX1Q9P2E3 1918 aaKnown RBP9.16□□□□□ -0.94
SPG11-205ENST00000558080 RAB11FIP3O75154 756 aa9.16□□□□□ -0.94
SPG11-205ENST00000558080 MYCP01106 439 aaPredicted RBP9.16□□□□□ -0.94
SPG11-205ENST00000558080 CTGFP29279 349 aa9.16□□□□□ -0.94
SPG11-205ENST00000558080 PSMC4P43686 418 aa9.16□□□□□ -0.94
SPG11-205ENST00000558080 MAP3K12Q12852 859 aa9.16□□□□□ -0.94
SPG11-205ENST00000558080 SPP2Q13103 211 aa9.16□□□□□ -0.94
SPG11-205ENST00000558080 PDE3AQ14432 1141 aa9.16□□□□□ -0.94
SPG11-205ENST00000558080 CRACR2BQ8N4Y2 399 aaPredicted RBP9.16□□□□□ -0.94
SPG11-205ENST00000558080 PARK7Q99497 189 aaKnown RBP9.16□□□□□ -0.94
SPG11-205ENST00000558080 DNAJC2Q99543 621 aaKnown RBP9.16□□□□□ -0.94
SPG11-205ENST00000558080 TRIM34Q9BYJ4 488 aa9.16□□□□□ -0.94
SPG11-205ENST00000558080 UNC93B1Q9H1C4 597 aa9.16□□□□□ -0.94
SPG11-205ENST00000558080 HERC5Q9UII4 1024 aaKnown RBP9.16□□□□□ -0.94
SPG11-205ENST00000558080 HTTP42858 3142 aa9.16□□□□□ -0.94
SPG11-205ENST00000558080 PLXNB2O15031 1838 aa9.15□□□□□ -0.94
SPG11-205ENST00000558080 DDX60LQ5H9U9 1706 aaKnown RBP9.15□□□□□ -0.94
SPG11-205ENST00000558080 USP17L5A8MUK1 530 aa9.15□□□□□ -0.94
SPG11-205ENST00000558080 GOLIM4O00461 696 aa9.15□□□□□ -0.94
SPG11-205ENST00000558080 SMARCA5O60264 1052 aaPredicted RBP9.15□□□□□ -0.94
SPG11-205ENST00000558080 IGSF3O75054 1194 aa9.15□□□□□ -0.94
SPG11-205ENST00000558080 GDF11O95390 407 aa9.15□□□□□ -0.94
SPG11-205ENST00000558080 SSTR3P32745 418 aaPredicted RBP9.15□□□□□ -0.94
SPG11-205ENST00000558080 USP5P45974 858 aa9.15□□□□□ -0.94
SPG11-205ENST00000558080 JAG1P78504 1218 aa9.15□□□□□ -0.94
SPG11-205ENST00000558080 SHROOM1Q2M3G4 852 aaPredicted RBP9.15□□□□□ -0.94
SPG11-205ENST00000558080 SLC9C1Q4G0N8 1177 aa9.15□□□□□ -0.94
SPG11-205ENST00000558080 DESI1Q6ICB0 168 aa9.15□□□□□ -0.94
SPG11-205ENST00000558080 FOXP4Q8IVH2 680 aaPredicted RBP9.15□□□□□ -0.94
SPG11-205ENST00000558080 SH3TC2Q8TF17 1288 aa9.15□□□□□ -0.94
SPG11-205ENST00000558080 ARMC5Q96C12 935 aa9.15□□□□□ -0.94
SPG11-205ENST00000558080 EDC3Q96F86 508 aaKnown RBP9.15□□□□□ -0.94
SPG11-205ENST00000558080 CENPFP49454 3210 aa9.14□□□□□ -0.95
SPG11-205ENST00000558080 MAGEB6P1A0A0J9YX57 407 aa9.14□□□□□ -0.95
SPG11-205ENST00000558080 HLA-DOAP06340 250 aa9.14□□□□□ -0.95
SPG11-205ENST00000558080 BCRP11274 1271 aa9.14□□□□□ -0.95
SPG11-205ENST00000558080 PDE6AP16499 860 aa9.14□□□□□ -0.95
SPG11-205ENST00000558080 HMGCS2P54868 508 aa9.14□□□□□ -0.95
SPG11-205ENST00000558080 KCNH2Q12809 1159 aa9.14□□□□□ -0.95
SPG11-205ENST00000558080 TTF1Q15361 905 aaPredicted RBP9.14□□□□□ -0.95
SPG11-205ENST00000558080 TREML2Q5T2D2 321 aa9.14□□□□□ -0.95
SPG11-205ENST00000558080 SLC9C2Q5TAH2 1124 aa9.14□□□□□ -0.95
SPG11-205ENST00000558080 NBPF11Q86T75 865 aa9.14□□□□□ -0.95
SPG11-205ENST00000558080 ZNF280CQ8ND82 737 aa9.14□□□□□ -0.95
SPG11-205ENST00000558080 BOLA2Q9H3K6 86 aa9.14□□□□□ -0.95
SPG11-205ENST00000558080 DNAJC18Q9H819 358 aa9.14□□□□□ -0.95
SPG11-205ENST00000558080 AGTPBP1Q9UPW5 1226 aa9.14□□□□□ -0.95
SPG11-205ENST00000558080 ZNF532Q9HCE3 1301 aa9.13□□□□□ -0.95
SPG11-205ENST00000558080 MOXD2PA6NHM9 499 aa9.13□□□□□ -0.95
SPG11-205ENST00000558080 GNRH1P01148 92 aa9.13□□□□□ -0.95
SPG11-205ENST00000558080 NDUFV2P19404 249 aa9.13□□□□□ -0.95
SPG11-205ENST00000558080 EN2P19622 333 aaPredicted RBP9.13□□□□□ -0.95
SPG11-205ENST00000558080 HOXD10P28358 340 aa9.13□□□□□ -0.95
SPG11-205ENST00000558080 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.13□□□□□ -0.95
SPG11-205ENST00000558080 PROCA1Q8NCQ7 364 aaPredicted RBP9.13□□□□□ -0.95
SPG11-205ENST00000558080 PRR7Q8TB68 274 aa9.13□□□□□ -0.95
SPG11-205ENST00000558080 RAET1EQ8TD07 263 aa9.13□□□□□ -0.95
SPG11-205ENST00000558080 SMCR8Q8TEV9 937 aaPredicted RBP9.13□□□□□ -0.95
SPG11-205ENST00000558080 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms