RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 REXO2Q9Y3B8 237 aaKnown RBP13.93□□□□□ -0.18
LDLR-205ENST00000557933 FAM237AA0A1B0GTK4 181 aa13.93□□□□□ -0.18
LDLR-205ENST00000557933 DEXIO95424 95 aa13.93□□□□□ -0.18
LDLR-205ENST00000557933 TUBB4AP04350 444 aa13.93□□□□□ -0.18
LDLR-205ENST00000557933 GPKOWQ92917 476 aaPredicted RBP eCLIP13.93□□□□□ -0.187e-9■□□□□ 10.9
LDLR-205ENST00000557933 PCMTD1Q96MG8 357 aaPredicted RBP13.93□□□□□ -0.18
LDLR-205ENST00000557933 GNL3LQ9NVN8 582 aaKnown RBP13.93□□□□□ -0.18
LDLR-205ENST00000557933 TTC26A0AVF1 554 aa13.92□□□□□ -0.18
LDLR-205ENST00000557933 RCCD1A6NED2 376 aa13.92□□□□□ -0.18
LDLR-205ENST00000557933 RNF40O75150 1001 aa13.92□□□□□ -0.18
LDLR-205ENST00000557933 PCCAP05165 728 aaPredicted RBP13.92□□□□□ -0.18
LDLR-205ENST00000557933 CYP7A1P22680 504 aa13.92□□□□□ -0.18
LDLR-205ENST00000557933 MAP3K12Q12852 859 aa13.92□□□□□ -0.18
LDLR-205ENST00000557933 SART3Q15020 963 aaKnown RBP13.92□□□□□ -0.18
LDLR-205ENST00000557933 UBE3CQ15386 1083 aa13.92□□□□□ -0.18
LDLR-205ENST00000557933 NELFBQ8WX92 580 aa13.92□□□□□ -0.18
LDLR-205ENST00000557933 MYO6Q9UM54 1294 aa13.92□□□□□ -0.18
LDLR-205ENST00000557933 GYG1P46976 350 aa13.92□□□□□ -0.18
LDLR-205ENST00000557933 ATP2B2Q01814 1243 aa13.92□□□□□ -0.18
LDLR-205ENST00000557933 C2orf54Q08AI8 447 aa13.92□□□□□ -0.18
LDLR-205ENST00000557933 BRD3Q15059 726 aa13.92□□□□□ -0.18
LDLR-205ENST00000557933 RASGRP2Q7LDG7 609 aa13.92□□□□□ -0.18
LDLR-205ENST00000557933 KRT26Q7Z3Y9 468 aa13.92□□□□□ -0.18
LDLR-205ENST00000557933 ANKRD13CQ8N6S4 541 aa13.92□□□□□ -0.18
LDLR-205ENST00000557933 GOLGA5Q8TBA6 731 aa13.92□□□□□ -0.18
LDLR-205ENST00000557933 CAGE1Q8TC20 777 aa13.92□□□□□ -0.18
LDLR-205ENST00000557933 EXOC4Q96A65 974 aa13.92□□□□□ -0.18
LDLR-205ENST00000557933 PANX2Q96RD6 677 aa13.92□□□□□ -0.18
LDLR-205ENST00000557933 CPVLQ9H3G5 476 aa13.92□□□□□ -0.18
LDLR-205ENST00000557933 AGPAT5Q9NUQ2 364 aa13.92□□□□□ -0.18
LDLR-205ENST00000557933 SBF2Q86WG5 1849 aa13.92□□□□□ -0.18
LDLR-205ENST00000557933 COL5A3P25940 1745 aaPredicted RBP13.92□□□□□ -0.18
LDLR-205ENST00000557933 KCNJ18B7U540 433 aa13.91□□□□□ -0.18
LDLR-205ENST00000557933 SLC7A5Q01650 507 aa13.91□□□□□ -0.18
LDLR-205ENST00000557933 KCNJ12Q14500 433 aa13.91□□□□□ -0.18
LDLR-205ENST00000557933 CCDC122Q5T0U0 273 aa13.91□□□□□ -0.18
LDLR-205ENST00000557933 CCDC24Q8N4L8 307 aa13.91□□□□□ -0.18
LDLR-205ENST00000557933 CEP112Q8N8E3 955 aa13.91□□□□□ -0.18
LDLR-205ENST00000557933 VGLL2Q8N8G2 317 aa13.91□□□□□ -0.18
LDLR-205ENST00000557933 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.91□□□□□ -0.18
LDLR-205ENST00000557933 PIGBQ92521 554 aa13.91□□□□□ -0.18
LDLR-205ENST00000557933 LACRTQ9GZZ8 138 aa13.91□□□□□ -0.18
LDLR-205ENST00000557933 CSF1RP07333 972 aa13.91□□□□□ -0.18
LDLR-205ENST00000557933 COPB1P53618 953 aaKnown RBP13.91□□□□□ -0.18
LDLR-205ENST00000557933 PKN1Q16512 942 aa13.91□□□□□ -0.18
LDLR-205ENST00000557933 IL17AQ16552 155 aa13.91□□□□□ -0.18
LDLR-205ENST00000557933 ENAHQ8N8S7 591 aaPredicted RBP13.91□□□□□ -0.18
LDLR-205ENST00000557933 HDAC7Q8WUI4 952 aa13.91□□□□□ -0.18
LDLR-205ENST00000557933 NUTM2BA6NNL0 878 aaPredicted RBP13.91□□□□□ -0.18
LDLR-205ENST00000557933 NUTM2EB1AL46 878 aaPredicted RBP13.91□□□□□ -0.18
LDLR-205ENST00000557933 ERLIN1O75477 346 aa13.91□□□□□ -0.18
LDLR-205ENST00000557933 LIFRP42702 1097 aa13.91□□□□□ -0.18
LDLR-205ENST00000557933 PRCPP42785 496 aa13.91□□□□□ -0.18
LDLR-205ENST00000557933 NT5DC1Q5TFE4 455 aa13.91□□□□□ -0.18
LDLR-205ENST00000557933 LRRC31Q6UY01 552 aa13.91□□□□□ -0.18
LDLR-205ENST00000557933 FOXP1Q9H334 677 aaPredicted RBP13.91□□□□□ -0.18
LDLR-205ENST00000557933 JADE2Q9NQC1 790 aa13.91□□□□□ -0.18
LDLR-205ENST00000557933 PLEKP08567 350 aaPredicted RBP13.9□□□□□ -0.18
LDLR-205ENST00000557933 PDE4CQ08493 712 aa13.9□□□□□ -0.18
LDLR-205ENST00000557933 E2F4Q16254 413 aa13.9□□□□□ -0.18
LDLR-205ENST00000557933 PTPROQ16827 1216 aa13.9□□□□□ -0.18
LDLR-205ENST00000557933 TTC38Q5R3I4 469 aa13.9□□□□□ -0.18
LDLR-205ENST00000557933 CDKAL1Q5VV42 579 aa13.9□□□□□ -0.18
LDLR-205ENST00000557933 PACS2Q86VP3 889 aa13.9□□□□□ -0.18
LDLR-205ENST00000557933 B4DLN1 442 aa13.9□□□□□ -0.18
LDLR-205ENST00000557933 PDE2AO00408 941 aaPredicted RBP13.9□□□□□ -0.18
LDLR-205ENST00000557933 IBSPP21815 317 aaPredicted RBP13.9□□□□□ -0.18
LDLR-205ENST00000557933 KRT2P35908 639 aa13.9□□□□□ -0.18
LDLR-205ENST00000557933 PBX1P40424 430 aa13.9□□□□□ -0.18
LDLR-205ENST00000557933 TTF1Q15361 905 aaPredicted RBP13.9□□□□□ -0.18
LDLR-205ENST00000557933 CNGA4Q8IV77 575 aa13.9□□□□□ -0.18
LDLR-205ENST00000557933 ATG3Q9NT62 314 aa13.9□□□□□ -0.18
LDLR-205ENST00000557933 EPN1Q9Y6I3 576 aaPredicted RBP13.9□□□□□ -0.18
LDLR-205ENST00000557933 C4AP0C0L4 1744 aa13.9□□□□□ -0.18
LDLR-205ENST00000557933 C4BP0C0L5 1744 aa13.9□□□□□ -0.18
LDLR-205ENST00000557933 GGCXP38435 758 aa13.89□□□□□ -0.19
LDLR-205ENST00000557933 DDB1Q16531 1140 aa13.89□□□□□ -0.19
LDLR-205ENST00000557933 MUM1L1Q5H9M0 696 aa13.89□□□□□ -0.19
LDLR-205ENST00000557933 IFIT1BQ5T764 474 aaKnown RBP13.89□□□□□ -0.19
LDLR-205ENST00000557933 KIAA1328Q86T90 577 aa13.89□□□□□ -0.19
LDLR-205ENST00000557933 WASF1Q92558 559 aa13.89□□□□□ -0.19
LDLR-205ENST00000557933 RRP36Q96EU6 259 aaKnown RBP13.89□□□□□ -0.19
LDLR-205ENST00000557933 NGLY1Q96IV0 654 aa13.89□□□□□ -0.19
LDLR-205ENST00000557933 SLC4A9Q96Q91 983 aa13.89□□□□□ -0.19
LDLR-205ENST00000557933 NDUFA10O95299 355 aa13.89□□□□□ -0.19
LDLR-205ENST00000557933 CYP2D6P10635 497 aa13.89□□□□□ -0.19
LDLR-205ENST00000557933 ERCC5P28715 1186 aaPredicted RBP13.89□□□□□ -0.19
LDLR-205ENST00000557933 RNASE9P60153 205 aaKnown RBP13.89□□□□□ -0.19
LDLR-205ENST00000557933 SLC51AQ86UW1 340 aa13.89□□□□□ -0.19
LDLR-205ENST00000557933 CWC15Q9P013 229 aaKnown RBP13.89□□□□□ -0.19
LDLR-205ENST00000557933 LY75O60449 1722 aa13.89□□□□□ -0.19
LDLR-205ENST00000557933 EIF3CLB5ME19 914 aaKnown RBP13.88□□□□□ -0.19
LDLR-205ENST00000557933 EIF3JO75822 258 aaKnown RBP13.88□□□□□ -0.19
LDLR-205ENST00000557933 NLRP5P59047 1200 aa13.88□□□□□ -0.19
LDLR-205ENST00000557933 PAK1Q13153 545 aa13.88□□□□□ -0.19
LDLR-205ENST00000557933 PUM3Q15397 648 aaKnown RBP13.88□□□□□ -0.19
LDLR-205ENST00000557933 ENOX2Q16206 610 aaKnown RBP13.88□□□□□ -0.19
LDLR-205ENST00000557933 GIGYF2Q6Y7W6 1299 aaKnown RBP13.88□□□□□ -0.19
LDLR-205ENST00000557933 EIF3CQ99613 913 aaKnown RBP13.88□□□□□ -0.19
LDLR-205ENST00000557933 NACAP1Q9BZK3 213 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms