RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 ZNF296Q8WUU4 475 aaPredicted RBP17.44■□□□□ 0.38
VIPAS39-210ENST00000557466 GMCL1Q96IK5 515 aa17.44■□□□□ 0.38
VIPAS39-210ENST00000557466 KAT14Q9H8E8 782 aa17.44■□□□□ 0.38
VIPAS39-210ENST00000557466 SENP2Q9HC62 589 aa17.44■□□□□ 0.38
VIPAS39-210ENST00000557466 FBXO28Q9NVF7 368 aa17.44■□□□□ 0.38
VIPAS39-210ENST00000557466 PEX10O60683 326 aa17.43■□□□□ 0.38
VIPAS39-210ENST00000557466 BMP3P12645 472 aa17.43■□□□□ 0.38
VIPAS39-210ENST00000557466 GCLCP48506 637 aaPredicted RBP17.43■□□□□ 0.38
VIPAS39-210ENST00000557466 TMEM67Q5HYA8 995 aa17.43■□□□□ 0.38
VIPAS39-210ENST00000557466 IFIT1BQ5T764 474 aaKnown RBP17.43■□□□□ 0.38
VIPAS39-210ENST00000557466 PNMA1Q8ND90 353 aa17.43■□□□□ 0.38
VIPAS39-210ENST00000557466 JAKMIP1Q96N16 626 aaKnown RBP17.43■□□□□ 0.38
VIPAS39-210ENST00000557466 GPHNQ9NQX3 736 aaPredicted RBP17.43■□□□□ 0.38
VIPAS39-210ENST00000557466 MYPNQ86TC9 1320 aa17.43■□□□□ 0.38
VIPAS39-210ENST00000557466 ERICH2A1L162 156 aa17.42■□□□□ 0.38
VIPAS39-210ENST00000557466 SH2B2O14492 632 aaPredicted RBP17.42■□□□□ 0.38
VIPAS39-210ENST00000557466 EIF5BO60841 1220 aaKnown RBP17.42■□□□□ 0.38
VIPAS39-210ENST00000557466 FKTNO75072 461 aa17.42■□□□□ 0.38
VIPAS39-210ENST00000557466 PDHBP11177 359 aa17.42■□□□□ 0.38
VIPAS39-210ENST00000557466 DSG3P32926 999 aa17.42■□□□□ 0.38
VIPAS39-210ENST00000557466 SLC1A4P43007 532 aa17.42■□□□□ 0.38
VIPAS39-210ENST00000557466 COG2Q14746 738 aa17.42■□□□□ 0.38
VIPAS39-210ENST00000557466 WTAPQ15007 396 aa17.42■□□□□ 0.38
VIPAS39-210ENST00000557466 SART3Q15020 963 aaKnown RBP17.42■□□□□ 0.38
VIPAS39-210ENST00000557466 CCDC96Q2M329 555 aa17.42■□□□□ 0.38
VIPAS39-210ENST00000557466 SAMD1Q6SPF0 538 aaPredicted RBP17.42■□□□□ 0.38
VIPAS39-210ENST00000557466 LBX2Q6XYB7 198 aa17.42■□□□□ 0.38
VIPAS39-210ENST00000557466 KCTD1Q719H9 257 aa17.42■□□□□ 0.38
VIPAS39-210ENST00000557466 ANKRD13CQ8N6S4 541 aa17.42■□□□□ 0.38
VIPAS39-210ENST00000557466 IGDCC4Q8TDY8 1250 aa17.42■□□□□ 0.38
VIPAS39-210ENST00000557466 DCAF4Q8WV16 495 aa17.42■□□□□ 0.38
VIPAS39-210ENST00000557466 ATG4CQ96DT6 458 aa17.42■□□□□ 0.38
VIPAS39-210ENST00000557466 TCEANC2Q96MN5 208 aa17.42■□□□□ 0.38
VIPAS39-210ENST00000557466 LRRC2Q9BYS8 371 aa17.42■□□□□ 0.38
VIPAS39-210ENST00000557466 TXNRD2Q9NNW7 524 aa17.42■□□□□ 0.38
VIPAS39-210ENST00000557466 ISY1Q9ULR0 285 aaKnown RBP17.42■□□□□ 0.38
VIPAS39-210ENST00000557466 CNMDO75829 334 aa17.41■□□□□ 0.38
VIPAS39-210ENST00000557466 SNHG28P0DPA3 235 aa17.41■□□□□ 0.38
VIPAS39-210ENST00000557466 CPA1P15085 419 aa17.41■□□□□ 0.38
VIPAS39-210ENST00000557466 SP3Q02447 781 aa17.41■□□□□ 0.38
VIPAS39-210ENST00000557466 FAM110CQ1W6H9 321 aa17.41■□□□□ 0.38
VIPAS39-210ENST00000557466 GTF3C2Q8WUA4 911 aaPredicted RBP17.41■□□□□ 0.38
VIPAS39-210ENST00000557466 TMEM87BQ96K49 555 aa17.41■□□□□ 0.38
VIPAS39-210ENST00000557466 SLF1Q9BQI6 1058 aa17.41■□□□□ 0.38
VIPAS39-210ENST00000557466 MTA3Q9BTC8 594 aa17.41■□□□□ 0.38
VIPAS39-210ENST00000557466 PAGR1Q9BTK6 254 aa17.41■□□□□ 0.38
VIPAS39-210ENST00000557466 LY9Q9HBG7 655 aa17.41■□□□□ 0.38
VIPAS39-210ENST00000557466 RBPJLQ9UBG7 517 aa17.41■□□□□ 0.38
VIPAS39-210ENST00000557466 MORF4L1Q9UBU8 362 aa17.41■□□□□ 0.38
VIPAS39-210ENST00000557466 PPP1R9AQ9ULJ8 1098 aa17.41■□□□□ 0.38
VIPAS39-210ENST00000557466 FRMPD2Q68DX3 1309 aaPredicted RBP17.41■□□□□ 0.38
VIPAS39-210ENST00000557466 WDR19Q8NEZ3 1342 aa17.41■□□□□ 0.38
VIPAS39-210ENST00000557466 TMEM232C9JQI7 657 aa17.4■□□□□ 0.38
VIPAS39-210ENST00000557466 CAP1Q01518 475 aa17.4■□□□□ 0.38
VIPAS39-210ENST00000557466 EXOSC10Q01780 885 aaKnown RBP17.4■□□□□ 0.38
VIPAS39-210ENST00000557466 DHX32Q7L7V1 743 aaKnown RBP17.4■□□□□ 0.38
VIPAS39-210ENST00000557466 CD99L2Q8TCZ2 262 aa17.4■□□□□ 0.38
VIPAS39-210ENST00000557466 PRDM10Q9NQV6 1147 aa17.4■□□□□ 0.38
VIPAS39-210ENST00000557466 FEM1BQ9UK73 627 aa17.4■□□□□ 0.38
VIPAS39-210ENST00000557466 ECM2O94769 699 aaPredicted RBP17.39■□□□□ 0.37
VIPAS39-210ENST00000557466 HMGB1P09429 215 aaKnown RBP17.39■□□□□ 0.37
VIPAS39-210ENST00000557466 CASTP20810 708 aaKnown RBP17.39■□□□□ 0.37
VIPAS39-210ENST00000557466 STAT2P52630 851 aa17.39■□□□□ 0.37
VIPAS39-210ENST00000557466 ZNF543Q08ER8 600 aa17.39■□□□□ 0.37
VIPAS39-210ENST00000557466 TTBK2Q6IQ55 1244 aa17.39■□□□□ 0.37
VIPAS39-210ENST00000557466 BLOC1S2Q6QNY1 142 aa17.39■□□□□ 0.37
VIPAS39-210ENST00000557466 GPCPD1Q9NPB8 672 aa17.39■□□□□ 0.37
VIPAS39-210ENST00000557466 HOXC10Q9NYD6 342 aa17.39■□□□□ 0.37
VIPAS39-210ENST00000557466 BTBD7Q9P203 1132 aa17.39■□□□□ 0.37
VIPAS39-210ENST00000557466 RABGAP1Q9Y3P9 1069 aa17.39■□□□□ 0.37
VIPAS39-210ENST00000557466 PLXNB2O15031 1838 aa17.39■□□□□ 0.37
VIPAS39-210ENST00000557466 RPS6KB1P23443 525 aa17.38■□□□□ 0.37
VIPAS39-210ENST00000557466 PSMA5P28066 241 aa17.38■□□□□ 0.37
VIPAS39-210ENST00000557466 CTGFP29279 349 aa17.38■□□□□ 0.37
VIPAS39-210ENST00000557466 ERVK-9P63128 1117 aa17.38■□□□□ 0.37
VIPAS39-210ENST00000557466 ERVK-24P63145 666 aa17.38■□□□□ 0.37
VIPAS39-210ENST00000557466 LACTBP83111 547 aaPredicted RBP17.38■□□□□ 0.37
VIPAS39-210ENST00000557466 FAM160B2Q86V87 743 aa17.38■□□□□ 0.37
VIPAS39-210ENST00000557466 KIFC2Q96AC6 838 aa17.38■□□□□ 0.37
VIPAS39-210ENST00000557466 ERO1AQ96HE7 468 aa17.38■□□□□ 0.37
VIPAS39-210ENST00000557466 ARHGAP39Q9C0H5 1083 aa17.38■□□□□ 0.37
VIPAS39-210ENST00000557466 ADAMTS5Q9UNA0 930 aa17.38■□□□□ 0.37
VIPAS39-210ENST00000557466 MYH6P13533 1939 aa17.38■□□□□ 0.37
VIPAS39-210ENST00000557466 VWA5AO00534 786 aa17.37■□□□□ 0.37
VIPAS39-210ENST00000557466 PLA2G6O60733 806 aa17.37■□□□□ 0.37
VIPAS39-210ENST00000557466 GOLGA8HP0CJ92 632 aa17.37■□□□□ 0.37
VIPAS39-210ENST00000557466 LIFRP42702 1097 aa17.37■□□□□ 0.37
VIPAS39-210ENST00000557466 ANAPC15P60006 121 aa17.37■□□□□ 0.37
VIPAS39-210ENST00000557466 IKQ13123 557 aaPredicted RBP17.37■□□□□ 0.37
VIPAS39-210ENST00000557466 Q3C1V9 767 aa17.37■□□□□ 0.37
VIPAS39-210ENST00000557466 ZNF654Q8IZM8 581 aa17.37■□□□□ 0.37
VIPAS39-210ENST00000557466 MB21D1Q8N884 522 aa17.37■□□□□ 0.37
VIPAS39-210ENST00000557466 PRPF38AQ8NAV1 312 aaKnown RBP17.37■□□□□ 0.37
VIPAS39-210ENST00000557466 REPS2Q8NFH8 660 aa17.37■□□□□ 0.37
VIPAS39-210ENST00000557466 GPRC5AQ8NFJ5 357 aa17.37■□□□□ 0.37
VIPAS39-210ENST00000557466 ZSWIM6Q9HCJ5 1215 aa17.37■□□□□ 0.37
VIPAS39-210ENST00000557466 DOCK3Q8IZD9 2030 aa17.37■□□□□ 0.37
VIPAS39-210ENST00000557466 CCDC69A6NI79 296 aa17.36■□□□□ 0.37
VIPAS39-210ENST00000557466 PARP1P09874 1014 aaKnown RBP17.36■□□□□ 0.37
VIPAS39-210ENST00000557466 SLC16A2P36021 539 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms