RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	VSNL1	P62760	191 aa		18.34	■□□□□ 0.53
SHMT2-231	ENST00000557433	PTGDR	Q13258	359 aa		18.34	■□□□□ 0.53
SHMT2-231	ENST00000557433	TSR1	Q2NL82	804 aa	Known RBP	18.34	■□□□□ 0.53
SHMT2-231	ENST00000557433	TMTC3	Q6ZXV5	915 aa		18.34	■□□□□ 0.53
SHMT2-231	ENST00000557433	TRAPPC11	Q7Z392	1133 aa		18.34	■□□□□ 0.53
SHMT2-231	ENST00000557433	ENAH	Q8N8S7	591 aa	Predicted RBP	18.34	■□□□□ 0.53
SHMT2-231	ENST00000557433	OR8K1	Q8NGG5	319 aa		18.34	■□□□□ 0.53
SHMT2-231	ENST00000557433	NOC3L	Q8WTT2	800 aa	Known RBP	18.34	■□□□□ 0.53
SHMT2-231	ENST00000557433	NELFB	Q8WX92	580 aa		18.34	■□□□□ 0.53
SHMT2-231	ENST00000557433	BRIP1	Q9BX63	1249 aa		18.34	■□□□□ 0.53
SHMT2-231	ENST00000557433	NUP98	P52948	1817 aa		18.34	■□□□□ 0.53
SHMT2-231	ENST00000557433	MAGEB6P1	A0A0J9YX57	407 aa		18.33	■□□□□ 0.53
SHMT2-231	ENST00000557433	NDUFA10	O95299	355 aa		18.33	■□□□□ 0.53
SHMT2-231	ENST00000557433	CYP7A1	P22680	504 aa		18.33	■□□□□ 0.53
SHMT2-231	ENST00000557433	EEF1G	P26641	437 aa	Known RBP	18.33	■□□□□ 0.53
SHMT2-231	ENST00000557433	CCT6A	P40227	531 aa	Known RBP	18.33	■□□□□ 0.53
SHMT2-231	ENST00000557433	AARS	P49588	968 aa	Known RBP eCLIP	18.33	■□□□□ 0.53
SHMT2-231	ENST00000557433	NT5C2	P49902	561 aa		18.33	■□□□□ 0.53
SHMT2-231	ENST00000557433	KRT83	P78385	493 aa		18.33	■□□□□ 0.53
SHMT2-231	ENST00000557433	HELB	Q8NG08	1087 aa	Predicted RBP	18.33	■□□□□ 0.53
SHMT2-231	ENST00000557433	SHISA4	Q96DD7	197 aa		18.33	■□□□□ 0.53
SHMT2-231	ENST00000557433		V9GY48	417 aa	Predicted RBP	18.33	■□□□□ 0.53
SHMT2-231	ENST00000557433		A0A0U1RQG5	324 aa	Predicted RBP	18.33	■□□□□ 0.52
SHMT2-231	ENST00000557433	FAM205C	A6NFA0	338 aa		18.33	■□□□□ 0.52
SHMT2-231	ENST00000557433	RHOXF2B	P0C7M4	288 aa		18.33	■□□□□ 0.52
SHMT2-231	ENST00000557433	ZNF174	Q15697	407 aa		18.33	■□□□□ 0.52
SHMT2-231	ENST00000557433	NOM1	Q5C9Z4	860 aa	Known RBP	18.33	■□□□□ 0.52
SHMT2-231	ENST00000557433	EARS2	Q5JPH6	523 aa	Known RBP	18.33	■□□□□ 0.52
SHMT2-231	ENST00000557433	SMYD4	Q8IYR2	804 aa	Predicted RBP	18.33	■□□□□ 0.52
SHMT2-231	ENST00000557433	DNAJC7	Q99615	494 aa		18.33	■□□□□ 0.52
SHMT2-231	ENST00000557433	RHOXF2	Q9BQY4	288 aa		18.33	■□□□□ 0.52
SHMT2-231	ENST00000557433	DUOX1	Q9NRD9	1551 aa		18.33	■□□□□ 0.52
SHMT2-231	ENST00000557433	DLEC1	Q9Y238	1755 aa		18.33	■□□□□ 0.52
SHMT2-231	ENST00000557433	IGHMBP2	P38935	993 aa	Known RBP	18.32	■□□□□ 0.52
SHMT2-231	ENST00000557433	USP14	P54578	494 aa		18.32	■□□□□ 0.52
SHMT2-231	ENST00000557433	TROAP	Q12815	778 aa		18.32	■□□□□ 0.52
SHMT2-231	ENST00000557433	NPY5R	Q15761	445 aa		18.32	■□□□□ 0.52
SHMT2-231	ENST00000557433	CCDC152	Q4G0S7	254 aa		18.32	■□□□□ 0.52
SHMT2-231	ENST00000557433	WWC2	Q6AWC2	1192 aa		18.32	■□□□□ 0.52
SHMT2-231	ENST00000557433	SRL	Q86TD4	932 aa		18.32	■□□□□ 0.52
SHMT2-231	ENST00000557433	DZIP3	Q86Y13	1208 aa	Known RBP	18.32	■□□□□ 0.52
SHMT2-231	ENST00000557433	GOLGA6L1	Q8N7Z2	621 aa		18.32	■□□□□ 0.52
SHMT2-231	ENST00000557433	RETREG2	Q8NC44	543 aa		18.32	■□□□□ 0.52
SHMT2-231	ENST00000557433	THAP9	Q9H5L6	903 aa		18.32	■□□□□ 0.52
SHMT2-231	ENST00000557433	GNL3L	Q9NVN8	582 aa	Known RBP	18.32	■□□□□ 0.52
SHMT2-231	ENST00000557433		A0A0U1RQJ8	604 aa		18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	LGALS16	A8MUM7	142 aa		18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	RPN1	P04843	607 aa	Known RBP	18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	CALML3	P27482	149 aa		18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	EVA1C	P58658	441 aa		18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	KCNB1	Q14721	858 aa		18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	PAPD7	Q5XG87	772 aa	Known RBP	18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	ATRIP	Q8WXE1	791 aa		18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	IQCD	Q96DY2	449 aa		18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	NUP58	Q9BVL2	599 aa		18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	VPS16	Q9H269	839 aa		18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	LUC7L2	Q9Y383	392 aa	Known RBP	18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	SOS2	Q07890	1332 aa	Predicted RBP	18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	MINDY4B	A8MYZ0	360 aa		18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	MYO1C	O00159	1063 aa		18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	ZBTB22	O15209	634 aa		18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	UBXN1	Q04323	297 aa		18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	STIM1	Q13586	685 aa		18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	PARP10	Q53GL7	1025 aa		18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	IQCE	Q6IPM2	695 aa		18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	RUBCN	Q92622	972 aa		18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	SLF1	Q9BQI6	1058 aa		18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	TAB2	Q9NYJ8	693 aa		18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	CAPN11	Q9UMQ6	739 aa		18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	FAN1	Q9Y2M0	1017 aa		18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	RREB1	Q92766	1687 aa		18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	BCL9	O00512	1426 aa		18.31	■□□□□ 0.52
SHMT2-231	ENST00000557433	CNTNAP5	Q8WYK1	1306 aa		18.3	■□□□□ 0.52
SHMT2-231	ENST00000557433	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	18.3	■□□□□ 0.52
SHMT2-231	ENST00000557433	NHSL1	Q5SYE7	1610 aa		18.3	■□□□□ 0.52
SHMT2-231	ENST00000557433	STRCP1	A6NGW2	1772 aa		18.3	■□□□□ 0.52
SHMT2-231	ENST00000557433	ANO9	A1A5B4	782 aa		18.3	■□□□□ 0.52
SHMT2-231	ENST00000557433	CASP1	P29466	404 aa		18.3	■□□□□ 0.52
SHMT2-231	ENST00000557433	MB21D1	Q8N884	522 aa		18.3	■□□□□ 0.52
SHMT2-231	ENST00000557433	MIGA1	Q8NAN2	632 aa		18.3	■□□□□ 0.52
SHMT2-231	ENST00000557433	CCDC102A	Q96A19	550 aa		18.3	■□□□□ 0.52
SHMT2-231	ENST00000557433	SAR1B	Q9Y6B6	198 aa		18.3	■□□□□ 0.52
SHMT2-231	ENST00000557433	ZNF804B	A4D1E1	1349 aa		18.3	■□□□□ 0.52
SHMT2-231	ENST00000557433	MYH2	Q9UKX2	1941 aa		18.3	■□□□□ 0.52
SHMT2-231	ENST00000557433	KRT86	O43790	486 aa		18.29	■□□□□ 0.52
SHMT2-231	ENST00000557433	PARP1	P09874	1014 aa	Known RBP	18.29	■□□□□ 0.52
SHMT2-231	ENST00000557433	SCG2	P13521	617 aa		18.29	■□□□□ 0.52
SHMT2-231	ENST00000557433	PPP1R2	P41236	205 aa		18.29	■□□□□ 0.52
SHMT2-231	ENST00000557433	BCAM	P50895	628 aa		18.29	■□□□□ 0.52
SHMT2-231	ENST00000557433	GYS2	P54840	703 aa		18.29	■□□□□ 0.52
SHMT2-231	ENST00000557433	BRINP3	Q76B58	766 aa		18.29	■□□□□ 0.52
SHMT2-231	ENST00000557433	ADSSL1	Q8N142	457 aa		18.29	■□□□□ 0.52
SHMT2-231	ENST00000557433	SH3GLB2	Q9NR46	395 aa		18.29	■□□□□ 0.52
SHMT2-231	ENST00000557433	ZBTB1	Q9Y2K1	713 aa		18.29	■□□□□ 0.52
SHMT2-231	ENST00000557433	RRP15	Q9Y3B9	282 aa	Known RBP	18.29	■□□□□ 0.52
SHMT2-231	ENST00000557433	PDS5A	Q29RF7	1337 aa	Known RBP	18.29	■□□□□ 0.52
SHMT2-231	ENST00000557433	ORC4	O43929	436 aa		18.29	■□□□□ 0.52
SHMT2-231	ENST00000557433	PLEKHA8P1	O95397	391 aa		18.29	■□□□□ 0.52
SHMT2-231	ENST00000557433	CYLC1	P35663	651 aa	Predicted RBP	18.29	■□□□□ 0.52
SHMT2-231	ENST00000557433	DNM2	P50570	870 aa		18.29	■□□□□ 0.52

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