RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 SLC44A5Q8NCS7 719 aa15.1■□□□□ 0.01
SHMT2-230ENST00000557427 EAF2Q96CJ1 260 aaPredicted RBP15.1■□□□□ 0.01
SHMT2-230ENST00000557427 MOV10L1Q9BXT6 1211 aaKnown RBP15.1■□□□□ 0.01
SHMT2-230ENST00000557427 GINM1Q9NU53 330 aa15.1■□□□□ 0.01
SHMT2-230ENST00000557427 PALD1Q9ULE6 856 aa15.1■□□□□ 0.01
SHMT2-230ENST00000557427 ZNF236Q9UL36 1845 aa15.1■□□□□ 0.01
SHMT2-230ENST00000557427 GH2P01242 217 aa15.09■□□□□ 0.01
SHMT2-230ENST00000557427 VCAM1P19320 739 aa15.09■□□□□ 0.01
SHMT2-230ENST00000557427 ARID4AP29374 1257 aaPredicted RBP15.09■□□□□ 0.01
SHMT2-230ENST00000557427 TMEM31Q5JXX7 168 aa15.09■□□□□ 0.01
SHMT2-230ENST00000557427 MAPKAPK5Q8IW41 473 aa15.09■□□□□ 0.01
SHMT2-230ENST00000557427 RPAP2Q8IXW5 612 aaPredicted RBP15.09■□□□□ 0.01
SHMT2-230ENST00000557427 SNX27Q96L92 541 aa15.09■□□□□ 0.01
SHMT2-230ENST00000557427 XPNPEP3Q9NQH7 507 aa15.09■□□□□ 0.01
SHMT2-230ENST00000557427 LRP2BPQ9P2M1 347 aa15.09■□□□□ 0.01
SHMT2-230ENST00000557427 GSTO1P78417 241 aa15.08■□□□□ 0
SHMT2-230ENST00000557427 MFSD5Q6N075 450 aa15.08■□□□□ 0
SHMT2-230ENST00000557427 SIRT2Q8IXJ6 389 aa15.08■□□□□ 0
SHMT2-230ENST00000557427 ACER1Q8TDN7 264 aa15.08■□□□□ 0
SHMT2-230ENST00000557427 TGFBRAP1Q8WUH2 860 aa15.08■□□□□ 0
SHMT2-230ENST00000557427 TOX2Q96NM4 488 aa15.08■□□□□ 0
SHMT2-230ENST00000557427 NKX2-4Q9H2Z4 354 aa15.08■□□□□ 0
SHMT2-230ENST00000557427 IL1RAPL2Q9NP60 686 aa15.08■□□□□ 0
SHMT2-230ENST00000557427 TLR7Q9NYK1 1049 aaKnown RBP15.08■□□□□ 0
SHMT2-230ENST00000557427 DBNLQ9UJU6 430 aaKnown RBP15.08■□□□□ 0
SHMT2-230ENST00000557427 TBX21Q9UL17 535 aa15.08■□□□□ 0
SHMT2-230ENST00000557427 YBX2Q9Y2T7 364 aaKnown RBP15.08■□□□□ 0
SHMT2-230ENST00000557427 FLT1P17948 1338 aa15.08■□□□□ 0
SHMT2-230ENST00000557427 FAM86C2PA6NEL3 165 aa15.07■□□□□ 0
SHMT2-230ENST00000557427 STRNO43815 780 aa15.07■□□□□ 0
SHMT2-230ENST00000557427 HMMRO75330 724 aa15.07■□□□□ 0
SHMT2-230ENST00000557427 ACRP10323 421 aa15.07■□□□□ 0
SHMT2-230ENST00000557427 CSF2RAP15509 400 aa15.07■□□□□ 0
SHMT2-230ENST00000557427 ZNF365Q70YC5 407 aa15.07■□□□□ 0
SHMT2-230ENST00000557427 AACSQ86V21 672 aa15.07■□□□□ 0
SHMT2-230ENST00000557427 ERC1Q8IUD2 1116 aa15.07■□□□□ 0
SHMT2-230ENST00000557427 CRACR2BQ8N4Y2 399 aaPredicted RBP15.07■□□□□ 0
SHMT2-230ENST00000557427 LENG1Q96BZ8 264 aaPredicted RBP15.07■□□□□ 0
SHMT2-230ENST00000557427 MAML3Q96JK9 1138 aa15.07■□□□□ 0
SHMT2-230ENST00000557427 KIAA1683Q9H0B3 1180 aa15.07■□□□□ 0
SHMT2-230ENST00000557427 AATFQ9NY61 560 aaKnown RBP eCLIP15.07■□□□□ 0
SHMT2-230ENST00000557427 CDK5RAP2Q96SN8 1893 aa15.07■□□□□ 0
SHMT2-230ENST00000557427 GPR37L1O60883 481 aa15.06■□□□□ 0
SHMT2-230ENST00000557427 TAL1P17542 331 aaPredicted RBP15.06■□□□□ 0
SHMT2-230ENST00000557427 ERCC3P19447 782 aa15.06■□□□□ 0
SHMT2-230ENST00000557427 HSP90AB4PQ58FF6 505 aa15.06■□□□□ 0
SHMT2-230ENST00000557427 ADGRA1Q86SQ6 560 aa15.06■□□□□ 0
SHMT2-230ENST00000557427 RHPN1Q8TCX5 695 aa15.06■□□□□ 0
SHMT2-230ENST00000557427 FEZ1Q99689 392 aa15.06■□□□□ 0
SHMT2-230ENST00000557427 RPAP3Q9H6T3 665 aaPredicted RBP15.06■□□□□ 0
SHMT2-230ENST00000557427 SAP30BPQ9UHR5 308 aaKnown RBP15.06■□□□□ 0
SHMT2-230ENST00000557427 GBF1Q92538 1859 aa15.06■□□□□ 0
SHMT2-230ENST00000557427 DCDC2CA8MYV0 355 aa15.05■□□□□ -0
SHMT2-230ENST00000557427 ERC2O15083 957 aa15.05■□□□□ -0
SHMT2-230ENST00000557427 ADAMTS4O75173 837 aa15.05■□□□□ -0
SHMT2-230ENST00000557427 CYP2E1P05181 493 aaPredicted RBP15.05■□□□□ -0
SHMT2-230ENST00000557427 RARBP10826 455 aa15.05■□□□□ -0
SHMT2-230ENST00000557427 ZAP70P43403 619 aa15.05■□□□□ -0
SHMT2-230ENST00000557427 PPIGQ13427 754 aaKnown RBP eCLIP15.05■□□□□ -03e-10■□□□□ 10.6
SHMT2-230ENST00000557427 TATDN1Q6P1N9 297 aa15.05■□□□□ -0
SHMT2-230ENST00000557427 RNF180Q86T96 592 aa15.05■□□□□ -0
SHMT2-230ENST00000557427 MICALL1Q8N3F8 863 aa15.05■□□□□ -0
SHMT2-230ENST00000557427 IPO9Q96P70 1041 aaKnown RBP15.05■□□□□ -0
SHMT2-230ENST00000557427 SPATC1LQ9H0A9 340 aa15.05■□□□□ -0
SHMT2-230ENST00000557427 FOCADQ5VW36 1801 aa15.04■□□□□ -0
SHMT2-230ENST00000557427 TLL1O43897 1013 aa15.04■□□□□ -0
SHMT2-230ENST00000557427 ACLYP53396 1101 aa15.04■□□□□ -0
SHMT2-230ENST00000557427 PPP4CP60510 307 aa15.04■□□□□ -0
SHMT2-230ENST00000557427 RAB30Q15771 203 aa15.04■□□□□ -0
SHMT2-230ENST00000557427 SHCBP1Q8NEM2 672 aa15.04■□□□□ -0
SHMT2-230ENST00000557427 TRIM34Q9BYJ4 488 aa15.04■□□□□ -0
SHMT2-230ENST00000557427 TSPYL2Q9H2G4 693 aaPredicted RBP15.04■□□□□ -0
SHMT2-230ENST00000557427 SLC28A3Q9HAS3 691 aa15.04■□□□□ -0
SHMT2-230ENST00000557427 STARD7Q9NQZ5 370 aa15.04■□□□□ -0
SHMT2-230ENST00000557427 MSRAQ9UJ68 235 aa15.04■□□□□ -0
SHMT2-230ENST00000557427 GUCY1A2P33402 732 aa15.03■□□□□ -0
SHMT2-230ENST00000557427 CDK7P50613 346 aa15.03■□□□□ -0
SHMT2-230ENST00000557427 USP14P54578 494 aa15.03■□□□□ -0
SHMT2-230ENST00000557427 IRX5P78411 483 aaPredicted RBP15.03■□□□□ -0
SHMT2-230ENST00000557427 NUCB1Q02818 461 aa15.03■□□□□ -0
SHMT2-230ENST00000557427 RAB3GAP1Q15042 981 aa15.03■□□□□ -0
SHMT2-230ENST00000557427 AAK1Q2M2I8 961 aa15.03■□□□□ -0
SHMT2-230ENST00000557427 CCSAPQ6IQ19 270 aaPredicted RBP15.03■□□□□ -0
SHMT2-230ENST00000557427 NAA16Q6N069 864 aaPredicted RBP15.03■□□□□ -0
SHMT2-230ENST00000557427 HERVK_113Q902F9 699 aa15.03■□□□□ -0
SHMT2-230ENST00000557427 KIF1BPQ96EK5 621 aa15.03■□□□□ -0
SHMT2-230ENST00000557427 ZNF512BQ96KM6 892 aaPredicted RBP15.03■□□□□ -0
SHMT2-230ENST00000557427 PIH1D3Q9NQM4 214 aaKnown RBP15.03■□□□□ -0
SHMT2-230ENST00000557427 RAB11FIP3O75154 756 aa15.02■□□□□ -0
SHMT2-230ENST00000557427 IFIT2P09913 472 aaKnown RBP15.02■□□□□ -0
SHMT2-230ENST00000557427 ZNF865P0CJ78 1059 aaPredicted RBP15.02■□□□□ -0
SHMT2-230ENST00000557427 MYOGP15173 224 aa15.02■□□□□ -0
SHMT2-230ENST00000557427 MRE11P49959 708 aa15.02■□□□□ -0
SHMT2-230ENST00000557427 RABGGTBP53611 331 aa15.02■□□□□ -0
SHMT2-230ENST00000557427 COG2Q14746 738 aa15.02■□□□□ -0
SHMT2-230ENST00000557427 ABRAQ8N0Z2 381 aa15.02■□□□□ -0
SHMT2-230ENST00000557427 CLASRPQ8N2M8 674 aaKnown RBP15.02■□□□□ -0
SHMT2-230ENST00000557427 KLHDC9Q8NEP7 349 aa15.02■□□□□ -0
SHMT2-230ENST00000557427 NOL10Q9BSC4 688 aaKnown RBP15.02■□□□□ -0
SHMT2-230ENST00000557427 TSEN34Q9BSV6 310 aaKnown RBP15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms