RNA–Protein interactions for RNA: ENST00000556445.1

SRP54-211, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 530 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-211ENST00000556445 LRRC3Q9BY71 257 aa6.95□□□□□ -1.3
SRP54-211ENST00000556445 ADAMTS6Q9UKP5 1117 aa6.95□□□□□ -1.3
SRP54-211ENST00000556445 ARAP3Q8WWN8 1544 aa6.95□□□□□ -1.3
SRP54-211ENST00000556445 TONSLQ96HA7 1378 aa6.95□□□□□ -1.3
SRP54-211ENST00000556445 CCDC141Q6ZP82 1450 aa6.94□□□□□ -1.3
SRP54-211ENST00000556445 CDC42BPBQ9Y5S2 1711 aa6.94□□□□□ -1.3
SRP54-211ENST00000556445 UPK3BL1B0FP48 263 aa6.94□□□□□ -1.3
SRP54-211ENST00000556445 UPK3BL2E5RIL1 263 aa6.94□□□□□ -1.3
SRP54-211ENST00000556445 GRIN3BO60391 1043 aa6.94□□□□□ -1.3
SRP54-211ENST00000556445 HTR3BO95264 441 aa6.94□□□□□ -1.3
SRP54-211ENST00000556445 ITGB5P18084 799 aa6.94□□□□□ -1.3
SRP54-211ENST00000556445 EFCAB2Q5VUJ9 269 aa6.94□□□□□ -1.3
SRP54-211ENST00000556445 HS2ST1Q7LGA3 356 aa6.94□□□□□ -1.3
SRP54-211ENST00000556445 BCL11AQ9H165 835 aa6.94□□□□□ -1.3
SRP54-211ENST00000556445 SEMA3GQ9NS98 782 aa6.94□□□□□ -1.3
SRP54-211ENST00000556445 MBNL3Q9NUK0 354 aaKnown RBP6.94□□□□□ -1.3
SRP54-211ENST00000556445 REV1Q9UBZ9 1251 aa6.94□□□□□ -1.3
SRP54-211ENST00000556445 ADAMTS1Q9UHI8 967 aa6.94□□□□□ -1.3
SRP54-211ENST00000556445 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.94□□□□□ -1.3
SRP54-211ENST00000556445 ZNF644Q9H582 1327 aaPredicted RBP6.94□□□□□ -1.3
SRP54-211ENST00000556445 C9orf84Q5VXU9 1444 aa6.93□□□□□ -1.3
SRP54-211ENST00000556445 ARHGAP5Q13017 1502 aa6.93□□□□□ -1.3
SRP54-211ENST00000556445 TLR3O15455 904 aaKnown RBP6.93□□□□□ -1.3
SRP54-211ENST00000556445 DNAJA2O60884 412 aa6.93□□□□□ -1.3
SRP54-211ENST00000556445 NAALADL2Q58DX5 795 aa6.93□□□□□ -1.3
SRP54-211ENST00000556445 ANGEL2Q5VTE6 544 aaKnown RBP6.93□□□□□ -1.3
SRP54-211ENST00000556445 GIMAP6Q6P9H5 292 aa6.93□□□□□ -1.3
SRP54-211ENST00000556445 FAM13CQ8NE31 585 aa6.93□□□□□ -1.3
SRP54-211ENST00000556445 CYB5D2Q8WUJ1 264 aa6.93□□□□□ -1.3
SRP54-211ENST00000556445 ZNF296Q8WUU4 475 aaPredicted RBP6.93□□□□□ -1.3
SRP54-211ENST00000556445 ASB11Q8WXH4 323 aa6.93□□□□□ -1.3
SRP54-211ENST00000556445 HSPA12BQ96MM6 686 aa6.93□□□□□ -1.3
SRP54-211ENST00000556445 PPP1R1BQ9UD71 204 aaPredicted RBP6.93□□□□□ -1.3
SRP54-211ENST00000556445 CEP131Q9UPN4 1083 aa6.93□□□□□ -1.3
SRP54-211ENST00000556445 SUPT16HQ9Y5B9 1047 aaKnown RBP6.93□□□□□ -1.3
SRP54-211ENST00000556445 ST14Q9Y5Y6 855 aa6.93□□□□□ -1.3
SRP54-211ENST00000556445 MAST1Q9Y2H9 1570 aa6.93□□□□□ -1.3
SRP54-211ENST00000556445 PLCH2O75038 1416 aa6.93□□□□□ -1.3
SRP54-211ENST00000556445 ANKRD50Q9ULJ7 1429 aa6.93□□□□□ -1.3
SRP54-211ENST00000556445 FAM155AB1AL88 458 aaPredicted RBP6.92□□□□□ -1.3
SRP54-211ENST00000556445 CBX7O95931 251 aa6.92□□□□□ -1.3
SRP54-211ENST00000556445 RNASE1P07998 156 aaKnown RBP6.92□□□□□ -1.3
SRP54-211ENST00000556445 CRKP46108 304 aa6.92□□□□□ -1.3
SRP54-211ENST00000556445 NOL8Q76FK4 1167 aaKnown RBP6.92□□□□□ -1.3
SRP54-211ENST00000556445 SLFN12Q8IYM2 578 aa6.92□□□□□ -1.3
SRP54-211ENST00000556445 TMEM87AQ8NBN3 555 aa6.92□□□□□ -1.3
SRP54-211ENST00000556445 COX4I2Q96KJ9 171 aa6.92□□□□□ -1.3
SRP54-211ENST00000556445 MPHOSPH9Q99550 1183 aa6.92□□□□□ -1.3
SRP54-211ENST00000556445 BACH2Q9BYV9 841 aa6.92□□□□□ -1.3
SRP54-211ENST00000556445 ROBO2Q9HCK4 1378 aa6.92□□□□□ -1.3
SRP54-211ENST00000556445 MBD5Q9P267 1494 aa6.92□□□□□ -1.3
SRP54-211ENST00000556445 WDR7Q9Y4E6 1490 aa6.92□□□□□ -1.3
SRP54-211ENST00000556445 TTC37Q6PGP7 1564 aa6.91□□□□□ -1.3
SRP54-211ENST00000556445 SAMD9LQ8IVG5 1584 aa6.91□□□□□ -1.3
SRP54-211ENST00000556445 CHURC1-FNTBB4DL54 471 aa6.91□□□□□ -1.3
SRP54-211ENST00000556445 CYP7A1P22680 504 aa6.91□□□□□ -1.3
SRP54-211ENST00000556445 ETV3P41162 512 aa6.91□□□□□ -1.3
SRP54-211ENST00000556445 KIR3DL1P43629 444 aa6.91□□□□□ -1.3
SRP54-211ENST00000556445 YARSP54577 528 aaKnown RBP6.91□□□□□ -1.3
SRP54-211ENST00000556445 TNK2Q07912 1038 aa6.91□□□□□ -1.3
SRP54-211ENST00000556445 IKZF1Q13422 519 aa6.91□□□□□ -1.3
SRP54-211ENST00000556445 CDKAL1Q5VV42 579 aa6.91□□□□□ -1.3
SRP54-211ENST00000556445 TICAM2Q86XR7 235 aa6.91□□□□□ -1.3
SRP54-211ENST00000556445 SIN3AQ96ST3 1273 aa6.91□□□□□ -1.3
SRP54-211ENST00000556445 BRMS1Q9HCU9 246 aa6.91□□□□□ -1.3
SRP54-211ENST00000556445 ATP13A1Q9HD20 1204 aa6.91□□□□□ -1.3
SRP54-211ENST00000556445 BCCIPQ9P287 314 aaKnown RBP eCLIP6.91□□□□□ -1.3
SRP54-211ENST00000556445 MARCH6O60337 910 aa6.9□□□□□ -1.3
SRP54-211ENST00000556445 PAPLNO95428 1278 aa6.9□□□□□ -1.3
SRP54-211ENST00000556445 FANCCQ00597 558 aa6.9□□□□□ -1.3
SRP54-211ENST00000556445 CWF19L2Q2TBE0 894 aaKnown RBP6.9□□□□□ -1.3
SRP54-211ENST00000556445 SLC23A3Q6PIS1 610 aa6.9□□□□□ -1.3
SRP54-211ENST00000556445 PI4K2BQ8TCG2 481 aa6.9□□□□□ -1.3
SRP54-211ENST00000556445 Q96M66 194 aa6.9□□□□□ -1.3
SRP54-211ENST00000556445 FMNL2Q96PY5 1086 aa6.9□□□□□ -1.3
SRP54-211ENST00000556445 KRTAP9-2Q9BYQ4 174 aa6.9□□□□□ -1.3
SRP54-211ENST00000556445 RC3H2Q9HBD1 1191 aaKnown RBP6.9□□□□□ -1.3
SRP54-211ENST00000556445 KLHL3Q9UH77 587 aa6.9□□□□□ -1.3
SRP54-211ENST00000556445 KIF15Q9NS87 1388 aa6.9□□□□□ -1.31
SRP54-211ENST00000556445 KDM5DQ9BY66 1539 aa6.9□□□□□ -1.31
SRP54-211ENST00000556445 PLXNC1O60486 1568 aa6.9□□□□□ -1.31
SRP54-211ENST00000556445 H3BS24 57 aa6.89□□□□□ -1.31
SRP54-211ENST00000556445 PAX4O43316 350 aa6.89□□□□□ -1.31
SRP54-211ENST00000556445 ATE1O95260 518 aa6.89□□□□□ -1.31
SRP54-211ENST00000556445 ZNF76P36508 570 aa6.89□□□□□ -1.31
SRP54-211ENST00000556445 HNRNPMP52272 730 aaKnown RBP eCLIP6.89□□□□□ -1.31
SRP54-211ENST00000556445 ZP2Q05996 745 aa6.89□□□□□ -1.31
SRP54-211ENST00000556445 ZNF662Q6ZS27 426 aa6.89□□□□□ -1.31
SRP54-211ENST00000556445 THAP5Q7Z6K1 395 aa6.89□□□□□ -1.31
SRP54-211ENST00000556445 LRRN4CLQ8ND94 238 aa6.89□□□□□ -1.31
SRP54-211ENST00000556445 PIWIL2Q8TC59 973 aaKnown RBP6.89□□□□□ -1.31
SRP54-211ENST00000556445 PRDM7Q9NQW5 492 aa6.89□□□□□ -1.31
SRP54-211ENST00000556445 UBP1Q9NZI7 540 aa6.89□□□□□ -1.31
SRP54-211ENST00000556445 LMCD1Q9NZU5 365 aa6.89□□□□□ -1.31
SRP54-211ENST00000556445 RTEL1-TNFRSF6BF6WH68 1400 aa6.89□□□□□ -1.31
SRP54-211ENST00000556445 KDM6BO15054 1643 aa6.89□□□□□ -1.31
SRP54-211ENST00000556445 ABCA9Q8IUA7 1624 aa6.89□□□□□ -1.31
SRP54-211ENST00000556445 SYCP2Q9BX26 1530 aa6.88□□□□□ -1.31
SRP54-211ENST00000556445 ANKRD30BQ9BXX2 1392 aa6.88□□□□□ -1.31
SRP54-211ENST00000556445 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms